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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056519 ID=TCONS_00056519|Name=TCONS_00056519|organism=Clytia hemisphaerica|type=transcript|length=1587bp
GTCTGGATGTTGAGTCAGCACTTTGAGCAGTTATGACATGACTATAACCG
TGTTTGTTCTGTAATTCTGCCTACTTCATAACCAAATATTATTCCAACAA
TACACGGTCACATCCATAAAAAGTATGATGTAAAGTTTAGTATGGCAAAG
ACTTCATCACGTCCTAACAGTACTTATGATGACGGTGAAGTTATTGGATT
GCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACTAAACAAGTGTCAG
GAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAAAGTTGGAAAGACA
TCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAGAAGATGATCCAAA
CTGTcccatttcaaattttgaattcaaagatGAGAATGATAGTACAGTAG
AGTATTCTATATCAGATCCGGAATCTATAGACATAGACTCGCTGACATTT
GGGGACCATTACCGAAATGCACACTGTGTTGTATTAATATATGATGTCAC
TGACTTTAGTTCTTTGGATTATTTGAGCTATGAAAtagagaaaattgaaa
aaaataactataCTCCATATGCTAAATATGTTTTATTGCGAAATAAAATT
GAtaagaaatcatcaaaacatattCCTTTAGCtaagcaaaaagaattttt
tgcaaACAGTAAATTGCGCTTAAAGATTGATCATGTAGTTGAAACCTCTG
CAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGAACTGCCAGAA
TTACTAGTACTCCCgtcatcagaaagcaaagttaaGGCCTTTGATCGCCT
TGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCTTCCCCTGGTG
gcagaaaaaagaagaagaagaaaaggatcaaTTGTGCAACATCATAAGAA
TTTCATAAAGATTTACTTCAGAAAAAGCTTCCAGAATTTTGTTTACAGAA
GCAGGGTTTTGCTTTGTGTTTTGCATGGATGGCAAATGACAAGGTAAACT
CTGGGAGAGTTAAAGAATAATGCAGTAGTATTTTTagtttgttttatatt
tttgctttttgaaagcACAGGATAATAAGTTATGTTTTAACTCTTTAATA
TTATTAGCTCTATAAGACAGGCTATTTGATGAGAGCACTCTACAAAATGA
AAGTGTCTGTTACTTATTGGTATTGAATTTTATTGACTTTCCATAGCTTG
TGAATGTGATGACTCAGTTAAAATTTTAGTTATAATATCCTTTTAAGAGT
TATCTATCTTTATTATTTATGAAATTCACATacagtatttttgtttattt
ataatCATTTATATTACGTGTCATGCAGTGCTCTACCTTATTTTTAACAG
AACAGTAATCTCTTGAGAGgaattgataaaaataaaaattttcactttgt
ttTAGTCAATCTTTGATTTACTTAATTAGTTATACATCATTTGATGATGA
TTTTGTGTTATTGCGTTCTAGTTGCCGCTCTGAAATTAGGAAATTTATAa
tcatatttttatttgattttcttaattaaactttagttttaaaaaagaac
ttttgtattttgaagCTATATTTTACTTGAAATAGTT Run BLAST on NCBI protein sequence of TCONS_00056519-protein >TCONS_00056519-protein ID=TCONS_00056519-protein|Name=TCONS_00056519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MAKTSSRPNSTYDDGEVIGLPVKFGSGRWKNTKQVSGTRFKICLCGKSKV
GKTSIFMRLQGLDFAEDDPNCPISNFEFKDENDSTVEYSISDPESIDIDS
LTFGDHYRNAHCVVLIYDVTDFSSLDYLSYEIEKIEKNNYTPYAKYVLLR
NKIDKKSSKHIPLAKQKEFFANSKLRLKIDHVVETSAKTNEGILEFFKEE
LPELLVLPSSESKVKAFDRLVSDSQQGLDATDSSPGGRKKKKKKRINCAT
S Run BLAST on NCBI transcript from alignment at scaffold_276:709556..714421- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056519 ID=TCONS_00056519|Name=TCONS_00056519|organism=Clytia hemisphaerica|type=transcript|length=4866bp|location=Sequence derived from alignment at scaffold_276:709556..714421- (Clytia hemisphaerica)
GTCTGGATGTTGAGTCAGCACTTTGAGCAGTTATGACATGACTATAACCG
TGTTTGTTCTGTAATTCTGCCTACTTCATAACCAAATATTATTCCAACAA
TACACGGTCACATCCATAAAAAGTATGATGTAAAGGTATAAACACATTTC
TTGTTTCTTGCATTTTGATTTTAGTATAGTAAGATAGTCTATCGGTGTTG
TCAACAGTCTGTCCCTGTGACAAGGTACCCTGTGACAAACAAAAACAAGA
ACCTGACACCTGAAATAGCTAAATACAACCTGATGGTTTGGGGGAGAATG
ATGGTCATGGAGAAGGGTTTGATTGTAGACTTCTCCTTACCTCTCCTTCT
CCTAGCTTTTGATGTGGTGATAAACAGGGTTTTGAAGATTTCTGATTATA
ATTTTCCATAGAGGGGCTTTTTCATACATTTTTCTAGAATTACACAATCA
TTGAAGGATTCAGGGGTCATGTCATTATCTGAAATCCAGGAGACAGTCTT
TTCGAAGAACGCCACGCTCTTTTGAATAACTGACAATTCCAGCATACATT
TTTATAGTATGATAATGTCATATAATAATTGATTTGTCTTTTACAACACA
GCTGTTACCAGTTACCGTCAACTGCTCTAACTTGGGACTATCTGACAAAC
AGCAATTCAGCCACCATTTCACCAAACCTCCAAAGTCAGAAAGTCCTTTG
ATTTGAGTTAATGAAGGACGTATTAAAAAATACACGATTTCTCTTTCGCA
CCGAGTAGGCTTTAAATCGAAATATGAAAAAAATCTCATAGTGGAACACA
TGCAAATGTCTGGAAAAAAGAAGACCAAGTTAGTGGCAAAACAATCAGTC
AGGCACATCCTGGCAAATGAACGGGGTGAGCATTTGCATGGGGTATTCGT
CACCCAGTGTAAATGAGATAGGACGTCTCAGGCTAAAAGCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATCTATGCAATTCTTTGAAATGAAGCAAAATATTTCCAACCCGGTTC
AATTAAACTGGGTATTCGGCGCTATTACGTCACTTTCGTTTTCGACCCCG
TTCATTTTGCCAATGGTCGCAAGTGAAAAATACCCCGTTCATTTGCCAGG
ATGTGCCTGACTGACAATGGAGCGTTTGACGTCACTCGCGTGGCAAGTTA
AACACTGATATTTGTTAATCCCATCAGGCGATAGGCGGTTAGGCAGTGGG
CATTCTCTTATTCTCTTATCAGCGTCTGGTCATTTTGAATAAAAAAAAAA
AGTTAAAAAGGGCGCGCTATCCATCAGTGAAAGTTATCGTGACATGTTAT
GACAGAAAGTATGATTGATTAACTTGGTGGAGGTAGCAAAACAAACTTGT
TGTCAAAGAGATTTAACAGTAAGTGAAAATACAGACCAGAATATCAACAG
TCCCTTGTTTTGACCAATCGCCCCAAGTTAGAGCAGTTGACGGTACCTAG
AGACAAGATGATTTAGAGTAATTTGTTATTCAGACTATCGCGTTCTCCTA
AACAACTATTGCATTCATCAGAGGGACAAAAAGATTATAATAGTTGCTTG
GGAGACCACAACGGTCTATTGCATAACTTATTACTCCACACTTCAGTGGA
TACAATGGGATAAGTAAAGGAAGCGAGAAATTAGATATGACCTATGAATA
AGTTTTGTTCAAATTGGCATGTTAACATTCTCCCGAATTTGCATGCGATA
TCACTGCGAATCTTCTCGTGCTGCGTCCTATAAAGTATTAGCTGAGGTAG
TAGGGTTATATTTCCATAAATTGGAGCAGATAATTTCCGGTCCAAAGTGT
TTGAGTAATTAATATGGGGAACTGAGTCAATAGGTCGTTGCGTTCTCCTA
AACGACTATAAAAAGAATAGCAGATTTGACCATTATTTTATTGCCTTTTC
GTGATTTATGCAATAGACCTTTCCTGTAATTCCTTAAAAACAAGTACTAT
ATTTCTTTCCTTGAGTTATCATGATTTGAAACCATTTGAAAAATACCTCT
CTAGTTTAGTATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATG
ACGGTGAAGTTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAA
AATACTAAACAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAA
AAGCAAAGTTGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATT
TTGCAGAAGATGATCCAAACTGTCCCATTTCAAATTTTGAATTCAAAGAT
GAGAATGATAGTACAGTAGAGGTAAGATTTTGGAAATGACCAGAGAAAAA
GTATATAACATTGAACCCAGTAGACTTGAACTACAAAGCGCTTATTTCTT
TTTTAATTGTTGGGAAAATATTCTTATTAGAACATAATCTCGTATCTTAT
GTCAATATTTCTTGTAGCCTCTTATTCACAAATCAAGCTTTTTCATTATT
GTATCTTTCCATTTCAGTATTCTATATCAGATCCGGAATCTATAGACATA
GACTCGCTGACATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATT
AATATATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAA
TAGAGAAAATTGAAAAAAATAACTATACTCCATATGCTAAATATGTTTTA
TTGCGAAATAAAATTGATAAGAAATCATCAAAACATATTCCTTTAGCTAA
GCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCATG
TAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAA
GAAGAACTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTAA
GGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTG
ACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTGT
GCAACATCATAAGAATTTCATAAAGATTTACTTCAGAAAAAGCTTCCAGA
ATTTTGTTTACAGAAGCAGGCGTTTTGCTTTGTGTTTTGCATGGATGGCA
AATGACAAGGTAAACTCTGGGAGATTTAAAGAATAATGCAGTAGTATTTT
TAGTTTGTTTTATATTTTTGCTTTTTGAAAGCACAGGATAATAAGTTATG
TTTTAACTCTTTAATATTATTAGCTCTATAAGACAGGCTATTTGATGAGA
GCACTCTACAAAATGACTTTATTGACTTTCCATAGCTTGTGAATGTGATG
ACNCCAGAGAAAAAGTATATAACATTGAACCCAGTAGACTTGAACTACAA
AGCGCTTATTTCTTTTTTAATTGTTGGGAAAATATTCTTATTAGAACATA
ATCTCGTATCTTATGTCAATATTTCTTGTAGCCTCTTATTCACAAATCAA
GCTTTTTCATTATTGTATCTTTCCATTTCAGTATTCTATATCAGATCCGG
AATCTATAGACATAGACTCGCTGACATTTGGGGACCATTACCGAAATGCA
CACTGTGTTGTATTAATATATGATGTCACTGACTTTAGTTCTTTGGATTA
TTTGAGCTATGAAATAGAGAAAATTGAAAAAAATAACTATACTCCATATG
CTAAATATGTTTTATTGCGAAATAAAATTGATAAGAAATCATCAAAACAT
ATTCCTTTAGCTAAGCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCTT
AAAGATTGATCATGTAGTTGAAACCTCTGCAAAAACAAATGAAGGCATAT
TAGAATTCTTCAAAGAAGAACTGCCAGAATTACTAGTACTCCCGTCATCA
GAAAGCAAAGTTAAGGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGG
GCTAGATGCAACTGACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAGA
AAAGGATCAATTGTGCAACATCATAAGAATTTCATAAAGATTTACTTCAG
AAAAAGCTTCCAGAATTTTGTTTACAGAAGCAGGGTTTTGCTTTGTGTTT
TGCATGGATGGCAAATGACAAGGTAAACTCTGGGAGAGTTAAAGAATAAT
GCAGTAGTATTTTTAGTTTGTTTTATATTTTTGCTTTTTGAAAGCACAGG
ATAATAAGTTATGTTTTAACTCTTTAATATTATTAGCTCTATAAGACAGG
CTATTTGATGAGAGCACTCTACAAAATGAAAGTGTCTGTTACTTATTGGT
ATTGAATTTTATTGACTTTCCATAGCTTGTGAATGTGATGACTCAGTTAA
AATTTTAGTTATAATATCCTTTTAAGAGTTATCTATCTTTATTATTTATG
AAATTCACATACAGTATTTTTGTTTATTTATAATCATTTATATTACGTGT
CATGCAGTGCTCTACCTTATTTTTAACAGAACAGTAATCTCTTGAGAGGA
ATTGATAAAAATAAAAATTTTCACTTTGTTTTAGTCAATCTTTGATTTAC
TTAATTAGTTATACATCATTTGATGATGATTTTGTGTTATTGCGTTCTAG
TTGCCGCTCTGAAATTAGGAAATTTATAATCATATTTTTATTTGATTTTC
TTAATTAAACTTTAGTTTTAAAAAAGAACTTTTGTATTTTGAAGCTATAT
TTTACTTGAAATAGTT Coding sequence (CDS) from alignment at scaffold_276:709556..714421- >TCONS_00056519 ID=TCONS_00056519|Name=TCONS_00056519|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_276:709556..714421- (Clytia hemisphaerica)
ATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATTAATATATGATG
TCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAATAGAGAAAATT
GAAAAAAATAACTATACTCCATATGCTAAATATGTTTTATTGCGAAATAA
AATTGATAAGAAATCATCAAAACATATTCCTTTAGCTAAGCAAAAAGAAT
TTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCATGTAGTTGAAACC
TCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGAACTGCC
AGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTAAGGCCTTTGATC
GCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCTTCCCCT
GGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTGTGCAACATCATA
ATATTCTATATCAGATCCGGAATCTATAGACATAGACTCGCTGACATGGC
AAAGACTTCATCACGTCCTAACAGTACTTATGATGACGGTGAAGTTATTG
GATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACTAAACAAGTG
TCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAAAGTTGGAAA
GACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAGAAGATGATC
CAAACTGTCCCATTTCAAATTTTGAATTCAAAGATGAGAATGATAGTACA
GTAGAGATTTGGGGACCATTACCGAAATGCACACTGTGTTGTATTAATAT
ATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAAATAGAG
AAAATTGAAAAAAATAACTATACTCCATATGCTAAATATGTTTTATTGCG
AAATAAAATTGATAAGAAATCATCAAAACATATTCCTTTAGCTAAGCAAA
AAGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCATGTAGTT
GAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAAAGAAGA
ACTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTAAGGCCT
TTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACTGACTCT
TCCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTGTGCAAC
ATCATAATATTCTATATCAGATCCGGAATCTATAGACATAGACTCGCTGA
CATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACGGTGAAG
TTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAATACTAAA
CAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAGCAAAGT
TGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTGCAGAAG
ATGATCCAAACTGTCCCATTTCAAATTTTGAATTCAAAGATGAGAATGAT
AGTACAGTAGAGATTTGGGGACCATTACCGAAATGCACACTGTGTTGTAT
TAATATATGATGTCACTGACTTTAGTTCTTTGGATTATTTGAGCTATGAA
ATAGAGAAAATTGAAAAAAATAACTATACTCCATATGCTAAATATGTTTT
ATTGCGAAATAAAATTGATAAGAAATCATCAAAACATATTCCTTTAGCTA
AGCAAAAAGAATTTTTTGCAAACAGTAAATTGCGCTTAAAGATTGATCAT
GTAGTTGAAACCTCTGCAAAAACAAATGAAGGCATATTAGAATTCTTCAA
AGAAGAACTGCCAGAATTACTAGTACTCCCGTCATCAGAAAGCAAAGTTA
AGGCCTTTGATCGCCTTGTTAGTGATTCCCAACAAGGGCTAGATGCAACT
GACTCTTCCCCTGGTGGCAGAAAAAAGAAGAAGAAGAAAAGGATCAATTG
TGCAACATCATAATATTCTATATCAGATCCGGAATCTATAGACATAGACT
CGCTGACATGGCAAAGACTTCATCACGTCCTAACAGTACTTATGATGACG
GTGAAGTTATTGGATTGCCAGTGAAGTTTGGCAGCGGTAGATGGAAAAAT
ACTAAACAAGTGTCAGGAACAAGATTCAAAATATGTTTATGTGGAAAAAG
CAAAGTTGGAAAGACATCAATCTTTATGAGACTTCAGGGATTGGATTTTG
CAGAAGATGATCCAAACTGTCCCATTTCAAATTTTGAATTCAAAGATGAG
AATGATAGTACAGTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056519-exon-scaffold_276-1575043694:714287..714421 | TCONS_00056519-exon-scaffold_276-1575043694:714287..714421 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1575043694:711901..712167 | TCONS_00056519-exon-scaffold_276-1575043694:711901..712167 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1575043694:711661..711704 | TCONS_00056519-exon-scaffold_276-1575043694:711661..711704 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1575043694:709556..710696 | TCONS_00056519-exon-scaffold_276-1575043694:709556..710696 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1510915933:714287..714421 | TCONS_00056519-exon-scaffold_276-1510915933:714287..714421 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1510915933:711901..712167 | TCONS_00056519-exon-scaffold_276-1510915933:711901..712167 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1510915933:711661..711704 | TCONS_00056519-exon-scaffold_276-1510915933:711661..711704 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1510915933:709556..710696 | TCONS_00056519-exon-scaffold_276-1510915933:709556..710696 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1491911889:714287..714421 | TCONS_00056519-exon-scaffold_276-1491911889:714287..714421 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1491911889:711901..712167 | TCONS_00056519-exon-scaffold_276-1491911889:711901..712167 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1491911889:711661..711704 | TCONS_00056519-exon-scaffold_276-1491911889:711661..711704 | Clytia hemisphaerica | exon |
| TCONS_00056519-exon-scaffold_276-1491911889:709556..710696 | TCONS_00056519-exon-scaffold_276-1491911889:709556..710696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:709556..714421 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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