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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056438 ID=TCONS_00056438|Name=TCONS_00056438|organism=Clytia hemisphaerica|type=transcript|length=3678bpRun BLAST on NCBI protein sequence of TCONS_00056438-protein >TCONS_00056438-protein ID=TCONS_00056438-protein|Name=TCONS_00056438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=767bp MVQEREVLVILFCSVTGENDELLGVDESPITEINWIAIDSTENKKIREGERun BLAST on NCBI transcript from alignment at scaffold_276:612605..653006+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056438 ID=TCONS_00056438|Name=TCONS_00056438|organism=Clytia hemisphaerica|type=transcript|length=40402bp|location=Sequence derived from alignment at scaffold_276:612605..653006+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_276:612605..653006+ >TCONS_00056438 ID=TCONS_00056438|Name=TCONS_00056438|organism=Clytia hemisphaerica|type=CDS|length=29952bp|location=Sequence derived from alignment at scaffold_276:612605..653006+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056438 vs. Swiss-Prot (Human)
Match: ESRP1 (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2) HSP 1 Score: 370.163 bits (949), Expect = 2.466e-112 Identity = 205/474 (43.25%), Postives = 291/474 (61.39%), Query Frame = 3
Query: 438 LGEALKQF-EDIITELKQD-GAIIRLVTENGLHLRQCLHPRAFNQHINLADFFYRYIDLQKEYRAFREKATGFKKLQDIA---DDMFIKSSEDTLSTPLKKCQFCATVLQHLLKE--GHRFTRIEEIKKTLDSGTISG--YIKDETIIRARGLPWQVSDVDVADFFVGLNISRSGVALCLNLKGRRNGEALVRFDCQEHRDMALRRHKHHLLGRYIEVYKGTAQDFLKIXXXXXXXXXXXXVFLTNGGEVIVRMRGLPFDAKISDIVNFFGQSPKVYQGEEGVMLVSHPDGSPTGDAFVLFETESEGQVALKKHRENIGKRYVELFRSTRAELQQVLTMYNVGYQLFNPVHGQTYPQVQTVINDRALINQRLQALMNM-SCLRMRGLPFSAGQKDILNFLANHADNVVS-AVHIIYNLQGRPSGEAFVQMKNPDQAHKCAGDLHLKHMGERYIEVFQCSVQDMTWMLATSHANQ 1826
L +AL+QF + + EL G L T+ LH+RQ LHP A +++ L + FY + DL+KE++ + KL D+A + + + S + + ++ ++ E HRF+ E + +SGT S I D T++RARGLPWQ SD D+A FF GLNI++ G ALCLN +GRRNGEALVRF +EHRD+AL+RHKHH+ RYIEVYK T +DFLKIA G + + FL+ +VIVRMRGLPF A ++V FFGQ + G+EG++ V++PDG PTGDAFVLF E Q AL+KH++ +GKRY+ELFRST AE+QQVL ++ ++ Q+ N+ C+R+RGLP++A +DIL+FL A ++ + VH++ N QGRPSG+AF+QMK+ D+A A H K+M +RY+EVFQCS ++M ++L N+
Sbjct: 81 LDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKL-DVATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQ---FLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPL-----------IPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNR 539 The following BLAST results are available for this feature:
BLAST of TCONS_00056438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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