TCONS_00056438-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056438-protein
Unique NameTCONS_00056438-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056438-protein ID=TCONS_00056438-protein|Name=TCONS_00056438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=767bp
MVQEREVLVILFCSVTGENDELLGVDESPITEINWIAIDSTENKKIREGE
IYLKAEETKKTTHHHHHIELSDEDDVSSVDDVSTSSGDICASDVSSDDVI
YENETESEEEEGQSEKEDDDKIRIGLGEALKQFEDIITELKQDGAIIRLV
TENGLHLRQCLHPRAFNQHINLADFFYRYIDLQKEYRAFREKATGFKKLQ
DIADDMFIKSSEDTLSTPLKKCQFCATVLQHLLKEGHRFTRIEEIKKTLD
SGTISGYIKDETIIRARGLPWQVSDVDVADFFVGLNISRSGVALCLNLKG
RRNGEALVRFDCQEHRDMALRRHKHHLLGRYIEVYKGTAQDFLKIAKGPA
GAMHAAAVFLTNGGEVIVRMRGLPFDAKISDIVNFFGQSPKVYQGEEGVM
LVSHPDGSPTGDAFVLFETESEGQVALKKHRENIGKRYVELFRSTRAELQ
QVLTMYNVGYQLFNPVHGQTYPQVQTVINDRALINQRLQALMNMSCLRMR
GLPFSAGQKDILNFLANHADNVVSAVHIIYNLQGRPSGEAFVQMKNPDQA
HKCAGDLHLKHMGERYIEVFQCSVQDMTWMLATSHANQLACQHLSQLNHT
KTPKTSSSNNTTSPAGAKTTFQPSTPSPPPPPILQTTQAPPMNGILTSPP
PPITTNGFFPPEVSQPLPIYTGPFPPMFPPLPQQGFLPPPPPLPPHTSGV
PAIPTVMPPMYGDAMQFQMNPFGKPGPMTYIAVNSPEEAHRIIQHEKHMH
NKFLPGNAPYVEMFIAH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035570XLOC_035570Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056438TCONS_00056438Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 367..442
e-value: 9.9E-4
score: 28.4
coord: 263..335
e-value: 0.018
score: 22.0
coord: 496..570
e-value: 9.2E-5
score: 31.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 498..567
e-value: 6.1E-5
score: 22.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 262..339
score: 8.621
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 495..569
score: 8.638
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 251..344
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 492..571
coord: 368..456
NoneNo IPR availableGENE3D3.30.70.330coord: 362..453
e-value: 1.6E-7
score: 30.9
NoneNo IPR availableGENE3D3.30.70.330coord: 479..578
e-value: 1.1E-8
score: 34.5
NoneNo IPR availableGENE3D3.30.70.330coord: 258..341
e-value: 1.7E-4
score: 21.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 599..642
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..121
NoneNo IPR availableCDDcd12508RRM2_ESRPs_Fusillicoord: 365..444
e-value: 3.39108E-37
score: 133.586
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 4..245
e-value: 5.6E-5
score: 22.3

Blast
[Close]
BLAST of TCONS_00056438-protein vs. Swiss-Prot (Human)
Match: ESRP1 (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 384.8 bits (987), Expect = 2.026e-123
Identity = 256/729 (35.12%), Postives = 369/729 (50.62%), Query Frame = 0 
Query:    1 MVQEREVLVILFCSVTGENDELLGVDESPITEINWIAIDSTENKKIREGEIYLKAEETKKTTHHHHHIELSDEDDVSSVDDVSTSSGDICASDVSSDDVIYENETESEEEEGQSEKEDDDKIRIGLGEALKQF-EDIITELKQD-GAIIRLVTENGLHLRQCLHPRAFNQHINLADFFYRYIDLQKEYRAFREKATGFKKLQDIA---DDMFIKSSEDTLSTPLKKCQFCATVLQHLLKE--GHRFTRIEEIKKTLDSGTISG--YIKDETIIRARGLPWQVSDVDVADFFVGLNISRSGVALCLNLKGRRNGEALVRFDCQEHRDMALRRHKHHLLGRYIEVYKGTAQDFLKIAKGPAGAMHAAAVFLTNGGEVIVRMRGLPFDAKISDIVNFFGQSPKVYQGEEGVMLVSHPDGSPTGDAFVLFETESEGQVALKKHRENIGKRYVELFRSTRAELQQVLTMYNVGYQLFNPVHGQTYPQVQTVINDRALINQRLQALMNM-SCLRMRGLPFSAGQKDILNFLANHADNVVS-AVHIIYNLQGRPSGEAFVQMKNPDQAHKCAGDLHLKHMGERYIEVFQCSVQDMTWMLATSHANQLACQHLSQLNHTKTPKTSSSNNTTSPAGAK--TTFQPSTPSPPPPPILQTTQAPPMNGILTSPPPPITTNGFFPPEVSQPLPIYTG--PFPPMFPPLPQQGFLPPPPPLPPHTSGVPAIPTVMPPMYGDA 714
            M    + LV+LF    G     LG DE  +  + W  +D    K  +  E+ ++ ++ + T       E   E+    V+ +S++S                                       L +AL+QF + +  EL    G    L T+  LH+RQ LHP A  +++ L + FY + DL+KE++     +    KL D+A   + +  + S         + +    ++  ++ E   HRF+  E +    +SGT S    I D T++RARGLPWQ SD D+A FF GLNI++ G ALCLN +GRRNGEALVRF  +EHRD+AL+RHKHH+  RYIEVYK T +DFLKIA    G  +  A FL+   +VIVRMRGLPF A   ++V FFGQ   +  G+EG++ V++PDG PTGDAFVLF  E   Q AL+KH++ +GKRY+ELFRST AE+QQVL  ++                         ++ Q+     N+  C+R+RGLP++A  +DIL+FL   A ++ +  VH++ N QGRPSG+AF+QMK+ D+A   A   H K+M +RY+EVFQCS ++M ++L     N+                     N  SP   K      PS   P P  ++ T  A     ++ +P     +  ++P   +Q    YT   P PP  P     G+ P    L    SGVP  P  +  M G A
Sbjct:    1 MTASPDYLVVLFGITAGATGAKLGSDEKELILLFWKVVDLANKKVGQLHEVLVRPDQLELT-------EDCKEETKIDVESLSSAS--------------------------------------QLDQALRQFNQSVSNELNIGVGTSFCLCTDGQLHVRQILHPEASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKL-DVATMTEYLNFEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIA---GGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAAEVQQVLNRFS-----------SAPLIPLPTPPIIPVLPQQFVPPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNR---------------------NGLSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSVILNPRALQPSTAYYPAG-TQLFMNYTAYYPSPPGSP--NSLGYFPTAANL----SGVPPQPGTVVRMQGLA 641
The following BLAST results are available for this feature:
BLAST of TCONS_00056438-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ESRP12.026e-12335.12Epithelial splicing regulatory protein 1 OS=Homo s... [more]
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