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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056171 ID=TCONS_00056171|Name=TCONS_00056171|organism=Clytia hemisphaerica|type=transcript|length=2133bp
attttcttcatttctgtCAATCGAGCAGTAATGTTTTGAAAGCAGATTGA
TTATAATCTTGTAAAGAGGACATCAGATTAATTTTATTGccttattgatt
tttaattatttttagagATAACCGACAAATATACATCCTATTTTATGCAA
CAATCCATATAAAATAGAATGTATGATATGTAAATTTAGCATGAAGAAGA
TAGATTTGATTTAGTAATGTATTAAATACATACgaatttaaaacacaaac
attgCAGGTTTGATGGACACTGATAGAGTTGGTTTTACTGGCTGTGAAAT
TGTGAGTGAACTGTAAACATCAAATTACTAAACGGAGCAAACTGGTTAAA
AAGCTTTTGTACGTATCTCATCGCATGTTGTTTTGGAATTATAAATTATT
AAAACTTTAGTTTTTGTAAAATTGTCACGTGACTTTTTGATATAATTTGG
GGACGAGggagttatttttcattatgTTTGCTTTCCGAAGAGCGCAGAAT
TTTCGTCGACTGTCTTCATCAAATAACGAAGAACTTTCAATGGAAATGAT
AGATAGGGATGAAAGTCAATCTTCGAAAGAAAACGATCCTTTTATACAGG
ACATTGAGGAAacagatgttttgaaaaaagccAATGGGACAAGTAATGAT
GAATCTACTCAGAACTTTCCAAGTGTTTTAAAAAGAGAGAACAAACCACC
TTTACTTCGATTCGCAGCGTCTGTAAAGAAAGTTAGAGAAAATACCGGAC
AAGTGGTTGAAAATACTGAAGTGGATGACGCCCTTTTAAGCCCCAGCCAA
CAGACTCTAAAGAAACCGAAAACACCAACGACACCAATGAAAGACGCGGC
TACAAACGTAAAGAATGTAAAAAGTGCTGTCACGTTCATGCAAAAAGCTA
GCCTACGCTCGAGCTTGAAAAAGAAACTTCGTAAGATAGCAGAAGAGAGG
CTAACTATACGGCAAATCTTTCGTCGCTACGTGGATCAATCAACATTGCA
CGGATTCAGATATATAGTCTCTGATTCGTACTATGTTCGACGCTTCCTAT
GGGCTTGCCTCATGATTTTAGGCGCTGTTTATTTTATCATAAAACTCAAA
CAAGgtattattgaatatttctcCTATCCATTTAGTACTCTATCTACAAT
GGAGTACGTCAAAGAATCGCTACCACTGCCTGCTATTACTTTCTGTAGTG
TAAACCAGTTCAAATTAAGCCGATTGGAAGAGAGTCCTTTAATGTACAGA
CTATATGAAGAGAATCGGTTGCCACTATCCCGTAATTGGAGTGACCCGGG
TTTCGACATATCCGGTGAAGAGTTACACGAGCAATTGAAAAACGTATCAT
TGaacattgatgatatttttaagCACTGTGATTGGATAAAACGTGACACG
GCGCACCCTCTTGTTCCACCACGTGTATGCCACTCCGGTAATTTTACttc
ccatttttcaaaaagtggacAAATCTGTTTCACATTGAATTCTGGCAAAG
ATAACCATACAAAACTTGAAGTCAACCATTTTGGTATAAATGATGGTTAT
GAGGCTATGTTTGATTTCAATAACCAAGATGTCATCCCGTTTGAAGATTA
TACTGGTATACATGTGATCATTCATGATCCTAATGAATTACCTACTGATA
AAGTCGGATTTCTCATCTCACCTGGTTTCAAAGTTTACGTTAATTTGAAA
CGTGTCGAGGTCAACAATCTTGAGCCACCCTACAGTACAAAATGTGGTGA
AAAGCAGCTGAAATATTATGAGACATATTCACAAAGTGCGTGTCTGATGG
AAAAATTGACAGACTTTGTTGGTGAGAAGTGTGGGTGCAGAGAGCTGTAT
ATGCCAGaCAACAACCTTCCATATTGTTCACTGCGAGAAACATTTTCATG
TGCTTATCCTATGAAAGAATCTTTTAACCAATACGAAGCAAGGTTGGAAT
GTCCAATCGATTGCCAAGTGGTTGAATATCAGACCACCATTACTGATTNc
ttagcgggacaaatttgaccaattttgaccaaatttcgatctttcagggg
gtaaaaacttgaaattttcctatttttccgacccttagcgggactttgga
agtccaaaaaaggtacccttaagggcggcacat Run BLAST on NCBI protein sequence of TCONS_00056171-protein >TCONS_00056171-protein ID=TCONS_00056171-protein|Name=TCONS_00056171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MFAFRRAQNFRRLSSSNNEELSMEMIDRDESQSSKENDPFIQDIEETDVL
KKANGTSNDESTQNFPSVLKRENKPPLLRFAASVKKVRENTGQVVENTEV
DDALLSPSQQTLKKPKTPTTPMKDAATNVKNVKSAVTFMQKASLRSSLKK
KLRKIAEERLTIRQIFRRYVDQSTLHGFRYIVSDSYYVRRFLWACLMILG
AVYFIIKLKQGIIEYFSYPFSTLSTMEYVKESLPLPAITFCSVNQFKLSR
LEESPLMYRLYEENRLPLSRNWSDPGFDISGEELHEQLKNVSLNIDDIFK
HCDWIKRDTAHPLVPPRVCHSGNFTSHFSKSGQICFTLNSGKDNHTKLEV
NHFGINDGYEAMFDFNNQDVIPFEDYTGIHVIIHDPNELPTDKVGFLISP
GFKVYVNLKRVEVNNLEPPYSTKCGEKQLKYYETYSQSACLMEKLTDFVG
EKCGCRELYMPDNNLPYCSLRETFSCAYPMKESFNQYEARLECPIDCQVV
EYQTTITDXLAGQI Run BLAST on NCBI transcript from alignment at scaffold_268:172217..175826- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056171 ID=TCONS_00056171|Name=TCONS_00056171|organism=Clytia hemisphaerica|type=transcript|length=3610bp|location=Sequence derived from alignment at scaffold_268:172217..175826- (Clytia hemisphaerica)
ATTTTCTTCATTTCTGTCAATCGAGCAGTAATGTTTTGAAAGCAGATTGA
TTATAATCTTGTAAAGAGGACATCAGATTAATTTTATTGCCTTATTGATT
TTTAATTATTTTTAGAGATAACCGACAAATATACATCCTATTTTATGCAA
CAATCCATATAAAATAGAATGTATGATATGTAAATTTAGCATGAAGAAGA
TAGATTTGATTTAGTAATGTATTAAATACATACGAATTTAAAACACAAAC
ATTGCAGGTTTGATGGACACTGATAGAGTTGGTTTTACTGGCTGTGAAAT
TGTGAGTGAACTGTAAACATCAAATTACTAAACGGAGCAAACTGGTTAAA
AAGCTTTTGTACGTATCTCATCGCATGTTGTTTTGGAATTATAAATTATT
AAAACTTTAGTTTTTGTAAAATTGTCACGTGACTTTTTGATATAATTTGG
GGACGAGGGAGTTATTTTTCATTATGTTTGCTTTCCGAAGAGCGCAGAAT
TTTCGTCGACTGTCTTCATCAAATAACGAAGAACTTTCAATGGAAATGAT
AGATAGGGATGAAAGTCAATCTTCGAAAGAAAACGATCCTTTTATACAGG
ACATTGAGGAAACAGATGTTTTGAAAAAAGCCAATGGGACAAGTAATGAT
GAATCTACTCAGAACTTTCCAAGTGTTTTAAAAAGAGAGAACAAACCACC
TTTACTTCGATTCGCAGCGTCTGTAAAGAAAGTTAGAGAAAATACCGGAC
AAGTGGTTGAAAATACTGAAGTGGATGACGCCCTTTTAAGCCCCAGCCAA
CAGACTCTAAAGAAACCGAAAACACCAACGACACCAATGAAAGACGCGGC
TACAAACGTAAAGAATGTAAAAAGTGCTGTCACGTTCATGCAAAAAGCTA
GCCTACGCTCGAGCTTGAAAAAGAAACTTCGTAAGATAGCAGAAGAGAGG
CTAACTATACGGCAAATCTTTCGTCGCTACGTGGATCAATCAACATTGCA
CGGATTCAGATATATAGTCTCTGATTCGTACTATGTTCGACGCTTCCTAT
GGGCTTGCCTCATGATTTTAGGCGCTGTTTATTTTATCATAAAACTCAAA
CAAGGTATTATTGAATATTTCTCCTATCCATTTAGTACTCTATCTACAAT
GGAGTACGTCAAAGAATCGCTACCACTGCCTGCTATTACTTTCTGTAGTG
TAAACCAGTTCAAATTAAGCCGATTGGAAGAGAGTCCTTTAATGTACAGA
CTATATGAAGAGAATCGGTTGCCACTATCCCGTAATTGGAGTGACCCGGG
TTTCGACATATCCGGTGAAGAGTTACACGAGCAATTGAAAAACGTATCAT
TGAACATTGATGATATTTTTAAGCACTGTGATTGGATAAAACGTGACACG
GCGCACCCTCTTGTTCCACCACGTGTATGCCACTCCGGTAATTTTACTTC
CCATTTTTCAAAAAGTGGACAAATCTGTTTCACATTGAATTCTGGCAAAG
ATAACCATACAAAACTTGAAGTCAACCATTTTGGTATAAATGATGGTTAT
GAGGCTATGTTTGATTTCAATAACCAAGATGTCATCCCGTTTGAAGATTA
TACTGGTATACATGTGATCATTCATGATCCTAATGAATTACCTACTGATA
AAGTCGGATTTCTCATCTCACCTGGTTTCAAAGTTTACGTTAATTTGAAA
CGTGTCGAGGTAACAAACTTTGAATGCGACTTTTAACCCCTATATTTCCT
TTTTAAATTTCTTACTTTATTAGATCTCTTTCCTTGTGATTTAATCCGTC
AAACGGGTGTTATCAGACATCCCTGTCTCATCGTTTTGTCTAGCGCCAAG
AGTCCCTTGCTTTTGATTTGTAGGAATTTAAATTTCTGTTACACGTTTTT
GTATAAGAAAAAACTAATATAAGAACATAAGGCTTCAATGGCCATAATGC
TAAGAACAAGTTAAGAACATTTCAAGGCTTTGGGGATACTTAAAAACACC
CGATTTCTTAGGAAAATGGGCAAAATACCCATAAAATGGGGGAAAATAAG
AACATGTTAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAACATC
CGAAAGCTTCAAAAATTTTGCATGCTCTCATAAAAAACGTGTATTTACAA
TAAAATAATGAAATGATGGTACTTATCATAGCTGGTAGACTTTGAAAATG
ATCAAACTCGGAAAAAAATTAATCACTTTCCTTGTAGGTCAACAATCTTG
AGCCACCCTACAGTACAAAATGTGGTGAAAAGCAGCTGAAATATTATGAG
ACATATTCACAAAGTGCGTGTCTGATGGAAAAATTGACAGACTTTGTTGG
TGAGAAGTGTGGGTGCAGAGAGCTGTATATGCCAGGTATATGAGTTTTTT
GTCTTTTTATTACTTAGTCGTTTCACGTGGTCCAAATCATGAAAGTTCTC
TACGGGATAGTCATGATTGTACTTTTAGTAACAACTATGATGCAAAATTG
TCGGGAAATACTCTTTTTGTCAGGGAAACTAGACTGTTACAAATAGTTCT
TTAATGACATGAAAGGAAGAAAAGCAGAAAACACAAGGGAAATCTTTCTT
CATATTGTTTTTGATAGCATTTAGTCGATATATAGTTATGATTTCTTTTT
CAGACAACAACCTTCCATATTGTTCACTGCGAGAAACATTTTCATGTGCT
TATCCTATGAAAGGTGAGTTGACTGTTCTAATGCGAAAAAGAACTTTGTA
AAGTTTCTGTTGAACGTTTCCCGAATAAAATTGGCTGAACTTTGCTTTTT
GATAANCGAAAAAGAACTTTGTAAGGTTTCTGTTGAACGTTTCCCGAATA
AAATTGGCTGAACTTTGCTTTTTGATAATTTTTATGACGCTGAGTCCAGT
GAAGTAGACTAGGAGCATTTGGCGAGTTCGCCATTTTGGAAAAAAATATT
TGAAATCCAAATAACAAAAAAGCTACTCGAAGTTGAAAAATATAATTAAG
CATGAGAAACAAACATCAATAACAGATTTTTCAAATAAAAACATTGCTTT
TTCTTTTTTTACCTGGCAAAAACGAAGAAAATCAAAAAAAGCATATTACC
ATATACTACCGGGCCACTTCATCGCGCCATCCAGTCTATAAAAAAGCTTT
AAGTGGACCCCGGGCTAGTTGTCGAGGAGATCAGAACACTAGAGCGTTCA
CTGATTTTTGGAAACCCTAGTGACATAGAGATTTTTTATCTAACTAGATT
CCAGTTAGGTATAGATACAAATAACTTTATCAACCAGGAAATGCTTTGAA
TTTTTCTATCTTGACAACAAACCCCCTGAGCTTTGGCCTTTTACAGGTTT
TTCACAGCGACATCGACATATACATAAGATCCGTTTATGTTTAGAATCTT
TTAACCAATACGAAGCAAGGTTGGAATGTCCAATCGATTGCCAAGTGGTT
GAATATCAGACCACCATTACTGATTNCTTAGCGGGACAAATTTGACCAAT
TTTGACCAAATTTCGATCTTTCAGGGGGTAAAAACTTGAAATTTTCCTAT
TTTTCCGACCCTTAGCGGGACTTTGGAAGTCCAAAAAAGGTACCCTTAAG
GGCGGCACAT Coding sequence (CDS) from alignment at scaffold_268:172217..175826- >TCONS_00056171 ID=TCONS_00056171|Name=TCONS_00056171|organism=Clytia hemisphaerica|type=CDS|length=6180bp|location=Sequence derived from alignment at scaffold_268:172217..175826- (Clytia hemisphaerica)
AATCTTTTAACCAATACGAAGCAAGGTTGGAATGTCCAATCGATTGCCAA
GTGGTTGAATATCAGACCACCATTACTGATTNCTTAGCGGGACAAATTTG
AACAACAACCTTCCATATTGTTCACTGCGAGAAACATTTTCATGTGCTTA
TCCTATGAAAGGTCAACAATCTTGAGCCACCCTACAGTACAAAATGTGGT
GAAAAGCAGCTGAAATATTATGAGACATATTCACAAAGTGCGTGTCTGAT
GGAAAAATTGACAGACTTTGTTGGTGAGAAGTGTGGGTGCAGAGAGCTGT
ATATGCCAGATGTTTGCTTTCCGAAGAGCGCAGAATTTTCGTCGACTGTC
TTCATCAAATAACGAAGAACTTTCAATGGAAATGATAGATAGGGATGAAA
GTCAATCTTCGAAAGAAAACGATCCTTTTATACAGGACATTGAGGAAACA
GATGTTTTGAAAAAAGCCAATGGGACAAGTAATGATGAATCTACTCAGAA
CTTTCCAAGTGTTTTAAAAAGAGAGAACAAACCACCTTTACTTCGATTCG
CAGCGTCTGTAAAGAAAGTTAGAGAAAATACCGGACAAGTGGTTGAAAAT
ACTGAAGTGGATGACGCCCTTTTAAGCCCCAGCCAACAGACTCTAAAGAA
ACCGAAAACACCAACGACACCAATGAAAGACGCGGCTACAAACGTAAAGA
ATGTAAAAAGTGCTGTCACGTTCATGCAAAAAGCTAGCCTACGCTCGAGC
TTGAAAAAGAAACTTCGTAAGATAGCAGAAGAGAGGCTAACTATACGGCA
AATCTTTCGTCGCTACGTGGATCAATCAACATTGCACGGATTCAGATATA
TAGTCTCTGATTCGTACTATGTTCGACGCTTCCTATGGGCTTGCCTCATG
ATTTTAGGCGCTGTTTATTTTATCATAAAACTCAAACAAGGTATTATTGA
ATATTTCTCCTATCCATTTAGTACTCTATCTACAATGGAGTACGTCAAAG
AATCGCTACCACTGCCTGCTATTACTTTCTGTAGTGTAAACCAGTTCAAA
TTAAGCCGATTGGAAGAGAGTCCTTTAATGTACAGACTATATGAAGAGAA
TCGGTTGCCACTATCCCGTAATTGGAGTGACCCGGGTTTCGACATATCCG
GTGAAGAGTTACACGAGCAATTGAAAAACGTATCATTGAACATTGATGAT
ATTTTTAAGCACTGTGATTGGATAAAACGTGACACGGCGCACCCTCTTGT
TCCACCACGTGTATGCCACTCCGGTAATTTTACTTCCCATTTTTCAAAAA
GTGGACAAATCTGTTTCACATTGAATTCTGGCAAAGATAACCATACAAAA
CTTGAAGTCAACCATTTTGGTATAAATGATGGTTATGAGGCTATGTTTGA
TTTCAATAACCAAGATGTCATCCCGTTTGAAGATTATACTGGTATACATG
TGATCATTCATGATCCTAATGAATTACCTACTGATAAAGTCGGATTTCTC
ATCTCACCTGGTTTCAAAGTTTACGTTAATTTGAAACGTGTCGAGAATCT
TTTAACCAATACGAAGCAAGGTTGGAATGTCCAATCGATTGCCAAGTGGT
TGAATATCAGACCACCATTACTGATTNCTTAGCGGGACAAATTTGAACAA
CAACCTTCCATATTGTTCACTGCGAGAAACATTTTCATGTGCTTATCCTA
TGAAAGGTCAACAATCTTGAGCCACCCTACAGTACAAAATGTGGTGAAAA
GCAGCTGAAATATTATGAGACATATTCACAAAGTGCGTGTCTGATGGAAA
AATTGACAGACTTTGTTGGTGAGAAGTGTGGGTGCAGAGAGCTGTATATG
CCAGATGTTTGCTTTCCGAAGAGCGCAGAATTTTCGTCGACTGTCTTCAT
CAAATAACGAAGAACTTTCAATGGAAATGATAGATAGGGATGAAAGTCAA
TCTTCGAAAGAAAACGATCCTTTTATACAGGACATTGAGGAAACAGATGT
TTTGAAAAAAGCCAATGGGACAAGTAATGATGAATCTACTCAGAACTTTC
CAAGTGTTTTAAAAAGAGAGAACAAACCACCTTTACTTCGATTCGCAGCG
TCTGTAAAGAAAGTTAGAGAAAATACCGGACAAGTGGTTGAAAATACTGA
AGTGGATGACGCCCTTTTAAGCCCCAGCCAACAGACTCTAAAGAAACCGA
AAACACCAACGACACCAATGAAAGACGCGGCTACAAACGTAAAGAATGTA
AAAAGTGCTGTCACGTTCATGCAAAAAGCTAGCCTACGCTCGAGCTTGAA
AAAGAAACTTCGTAAGATAGCAGAAGAGAGGCTAACTATACGGCAAATCT
TTCGTCGCTACGTGGATCAATCAACATTGCACGGATTCAGATATATAGTC
TCTGATTCGTACTATGTTCGACGCTTCCTATGGGCTTGCCTCATGATTTT
AGGCGCTGTTTATTTTATCATAAAACTCAAACAAGGTATTATTGAATATT
TCTCCTATCCATTTAGTACTCTATCTACAATGGAGTACGTCAAAGAATCG
CTACCACTGCCTGCTATTACTTTCTGTAGTGTAAACCAGTTCAAATTAAG
CCGATTGGAAGAGAGTCCTTTAATGTACAGACTATATGAAGAGAATCGGT
TGCCACTATCCCGTAATTGGAGTGACCCGGGTTTCGACATATCCGGTGAA
GAGTTACACGAGCAATTGAAAAACGTATCATTGAACATTGATGATATTTT
TAAGCACTGTGATTGGATAAAACGTGACACGGCGCACCCTCTTGTTCCAC
CACGTGTATGCCACTCCGGTAATTTTACTTCCCATTTTTCAAAAAGTGGA
CAAATCTGTTTCACATTGAATTCTGGCAAAGATAACCATACAAAACTTGA
AGTCAACCATTTTGGTATAAATGATGGTTATGAGGCTATGTTTGATTTCA
ATAACCAAGATGTCATCCCGTTTGAAGATTATACTGGTATACATGTGATC
ATTCATGATCCTAATGAATTACCTACTGATAAAGTCGGATTTCTCATCTC
ACCTGGTTTCAAAGTTTACGTTAATTTGAAACGTGTCGAGAATCTTTTAA
CCAATACGAAGCAAGGTTGGAATGTCCAATCGATTGCCAAGTGGTTGAAT
ATCAGACCACCATTACTGATTNCTTAGCGGGACAAATTTGAACAACAACC
TTCCATATTGTTCACTGCGAGAAACATTTTCATGTGCTTATCCTATGAAA
GGTCAACAATCTTGAGCCACCCTACAGTACAAAATGTGGTGAAAAGCAGC
TGAAATATTATGAGACATATTCACAAAGTGCGTGTCTGATGGAAAAATTG
ACAGACTTTGTTGGTGAGAAGTGTGGGTGCAGAGAGCTGTATATGCCAGA
TGTTTGCTTTCCGAAGAGCGCAGAATTTTCGTCGACTGTCTTCATCAAAT
AACGAAGAACTTTCAATGGAAATGATAGATAGGGATGAAAGTCAATCTTC
GAAAGAAAACGATCCTTTTATACAGGACATTGAGGAAACAGATGTTTTGA
AAAAAGCCAATGGGACAAGTAATGATGAATCTACTCAGAACTTTCCAAGT
GTTTTAAAAAGAGAGAACAAACCACCTTTACTTCGATTCGCAGCGTCTGT
AAAGAAAGTTAGAGAAAATACCGGACAAGTGGTTGAAAATACTGAAGTGG
ATGACGCCCTTTTAAGCCCCAGCCAACAGACTCTAAAGAAACCGAAAACA
CCAACGACACCAATGAAAGACGCGGCTACAAACGTAAAGAATGTAAAAAG
TGCTGTCACGTTCATGCAAAAAGCTAGCCTACGCTCGAGCTTGAAAAAGA
AACTTCGTAAGATAGCAGAAGAGAGGCTAACTATACGGCAAATCTTTCGT
CGCTACGTGGATCAATCAACATTGCACGGATTCAGATATATAGTCTCTGA
TTCGTACTATGTTCGACGCTTCCTATGGGCTTGCCTCATGATTTTAGGCG
CTGTTTATTTTATCATAAAACTCAAACAAGGTATTATTGAATATTTCTCC
TATCCATTTAGTACTCTATCTACAATGGAGTACGTCAAAGAATCGCTACC
ACTGCCTGCTATTACTTTCTGTAGTGTAAACCAGTTCAAATTAAGCCGAT
TGGAAGAGAGTCCTTTAATGTACAGACTATATGAAGAGAATCGGTTGCCA
CTATCCCGTAATTGGAGTGACCCGGGTTTCGACATATCCGGTGAAGAGTT
ACACGAGCAATTGAAAAACGTATCATTGAACATTGATGATATTTTTAAGC
ACTGTGATTGGATAAAACGTGACACGGCGCACCCTCTTGTTCCACCACGT
GTATGCCACTCCGGTAATTTTACTTCCCATTTTTCAAAAAGTGGACAAAT
CTGTTTCACATTGAATTCTGGCAAAGATAACCATACAAAACTTGAAGTCA
ACCATTTTGGTATAAATGATGGTTATGAGGCTATGTTTGATTTCAATAAC
CAAGATGTCATCCCGTTTGAAGATTATACTGGTATACATGTGATCATTCA
TGATCCTAATGAATTACCTACTGATAAAGTCGGATTTCTCATCTCACCTG
GTTTCAAAGTTTACGTTAATTTGAAACGTGTCGAGAATCTTTTAACCAAT
ACGAAGCAAGGTTGGAATGTCCAATCGATTGCCAAGTGGTTGAATATCAG
ACCACCATTACTGATTNCTTAGCGGGACAAATTTGAACAACAACCTTCCA
TATTGTTCACTGCGAGAAACATTTTCATGTGCTTATCCTATGAAAGGTCA
ACAATCTTGAGCCACCCTACAGTACAAAATGTGGTGAAAAGCAGCTGAAA
TATTATGAGACATATTCACAAAGTGCGTGTCTGATGGAAAAATTGACAGA
CTTTGTTGGTGAGAAGTGTGGGTGCAGAGAGCTGTATATGCCAGATGTTT
GCTTTCCGAAGAGCGCAGAATTTTCGTCGACTGTCTTCATCAAATAACGA
AGAACTTTCAATGGAAATGATAGATAGGGATGAAAGTCAATCTTCGAAAG
AAAACGATCCTTTTATACAGGACATTGAGGAAACAGATGTTTTGAAAAAA
GCCAATGGGACAAGTAATGATGAATCTACTCAGAACTTTCCAAGTGTTTT
AAAAAGAGAGAACAAACCACCTTTACTTCGATTCGCAGCGTCTGTAAAGA
AAGTTAGAGAAAATACCGGACAAGTGGTTGAAAATACTGAAGTGGATGAC
GCCCTTTTAAGCCCCAGCCAACAGACTCTAAAGAAACCGAAAACACCAAC
GACACCAATGAAAGACGCGGCTACAAACGTAAAGAATGTAAAAAGTGCTG
TCACGTTCATGCAAAAAGCTAGCCTACGCTCGAGCTTGAAAAAGAAACTT
CGTAAGATAGCAGAAGAGAGGCTAACTATACGGCAAATCTTTCGTCGCTA
CGTGGATCAATCAACATTGCACGGATTCAGATATATAGTCTCTGATTCGT
ACTATGTTCGACGCTTCCTATGGGCTTGCCTCATGATTTTAGGCGCTGTT
TATTTTATCATAAAACTCAAACAAGGTATTATTGAATATTTCTCCTATCC
ATTTAGTACTCTATCTACAATGGAGTACGTCAAAGAATCGCTACCACTGC
CTGCTATTACTTTCTGTAGTGTAAACCAGTTCAAATTAAGCCGATTGGAA
GAGAGTCCTTTAATGTACAGACTATATGAAGAGAATCGGTTGCCACTATC
CCGTAATTGGAGTGACCCGGGTTTCGACATATCCGGTGAAGAGTTACACG
AGCAATTGAAAAACGTATCATTGAACATTGATGATATTTTTAAGCACTGT
GATTGGATAAAACGTGACACGGCGCACCCTCTTGTTCCACCACGTGTATG
CCACTCCGGTAATTTTACTTCCCATTTTTCAAAAAGTGGACAAATCTGTT
TCACATTGAATTCTGGCAAAGATAACCATACAAAACTTGAAGTCAACCAT
TTTGGTATAAATGATGGTTATGAGGCTATGTTTGATTTCAATAACCAAGA
TGTCATCCCGTTTGAAGATTATACTGGTATACATGTGATCATTCATGATC
CTAATGAATTACCTACTGATAAAGTCGGATTTCTCATCTCACCTGGTTTC
AAAGTTTACGTTAATTTGAAACGTGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056171-exon-scaffold_268-1575043694:174118..175826 | TCONS_00056171-exon-scaffold_268-1575043694:174118..175826 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1575043694:173442..173589 | TCONS_00056171-exon-scaffold_268-1575043694:173442..173589 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1575043694:173114..173173 | TCONS_00056171-exon-scaffold_268-1575043694:173114..173173 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1575043694:172217..172432 | TCONS_00056171-exon-scaffold_268-1575043694:172217..172432 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1510915933:174118..175826 | TCONS_00056171-exon-scaffold_268-1510915933:174118..175826 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1510915933:173442..173589 | TCONS_00056171-exon-scaffold_268-1510915933:173442..173589 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1510915933:173114..173173 | TCONS_00056171-exon-scaffold_268-1510915933:173114..173173 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1510915933:172217..172432 | TCONS_00056171-exon-scaffold_268-1510915933:172217..172432 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1491911889:174118..175826 | TCONS_00056171-exon-scaffold_268-1491911889:174118..175826 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1491911889:173442..173589 | TCONS_00056171-exon-scaffold_268-1491911889:173442..173589 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1491911889:173114..173173 | TCONS_00056171-exon-scaffold_268-1491911889:173114..173173 | Clytia hemisphaerica | exon |
| TCONS_00056171-exon-scaffold_268-1491911889:172217..172432 | TCONS_00056171-exon-scaffold_268-1491911889:172217..172432 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:172217..175826 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
BLAST of TCONS_00056171 vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 6.759e-32 Identity = 95/339 (28.02%), Postives = 155/339 (45.72%), Query Frame = 3
Query: 978 YVDQSTLHGFRYI-VSDSYYVRRFLWACLMILGAVYFIIKLKQGIIEYFSYPFSTLSTMEYVKESLPLPAITFCSVNQFKLSRLEESPLMYRLYEENRLPLSRNWSDPGF-DISGEELHEQ-----------------LKNVSLNIDDIFKHCDWIKRDTAHPLVPPRVCHSGNFTSHFSKSGQICFTLNSGKDNHTKLEVNHFGINDGYEAMFDFNNQDVIPFEDYT-------GIHVIIHDPNELP-TDKVGFLISPGFKVYVNLKRVEVNNLEPPYS-TKCGEKQLKYYETYSQSACLMEKLTDFVGEKCGCRELYMPDNNLPYCSLRETFSCAYP 1910
+ + STLHG R+I V +RR LWA + +++ + + YFSY T E V +SL PA+T C++N F+ SRL + L + L ++ DP D S E Q L V ++ D+ +C + ++ H +FT+ F+K G+ C+ NSG+D L G +G E M D + +P T G+ V IH +E P ++GF ++PGF+ +V + + L PP+ + E L ++ YS +AC ++ T ++ E C CR ++MP + P+C+ + CA P
Sbjct: 20 FANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQHVT-KVDEVVAQSLVFPAVTLCNLNGFRFSRLTTNDLYHAGELLALLDVNLQIPDPHLADPSVLEALRQKANFKHYKPKQFSMLEFLHRVGHDLKDMMLYCKFKGQECGHQ----------DFTTVFTKYGK-CYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWGECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMP-GDAPFCTPEQHKECAEP 345
The following BLAST results are available for this feature:
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