TCONS_00056163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056163
Unique NameTCONS_00056163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056163 ID=TCONS_00056163|Name=TCONS_00056163|organism=Clytia hemisphaerica|type=transcript|length=1514bp
AATTATAGTCTCTTCTATTTacattcagaaataaaaaaaacaacattaga
aataaagcaataaTACCATCAAAGACAATGTTATGAAAATAATGACACAC
TTTGGGTTGTGATTACATGAATAATACTTGCTGGTATCCCTACCACGTGG
CAATATGGCTAACAAAAAAATCATCTATATTGgTGGTCTTGCTGAGGAGG
TTGACGATAAAATGATTCAAGCAGCGTTCATCCCGTTCGGTGATATATTA
GACGTCAACATTCCTATCGATTACGAAACATCCAAACATAGAGGATTTGC
ATTTCTTGAATTCGAGCTAGCGGAAGATGCAGCAGCCGCCATTGATAACA
TGAACGAAAGTGAACTGTGTGGTCGAACCATTAGGTGCAATATTGCCAAA
CCGATGAAGAATGTGGAAGGAGCTTCAAGAGCAGTGTGGAACAGTGATGA
TTGGCTACAGAAACATGCAGCAAATGAGGGCGTCGATAAGGAAAATAGTG
GCGGCGAAAAAGGCGACGGTGAAAAAGTCGCAGGACAAAACCAAGATGAA
ACATCTAGTGAGCCAGCTGCTAAGAAGAAACGCACGAATCCTAAATGCTA
TCTGGACATCAGTATGAACGATCAGTACGCTGGACGAATCGTTATTGAGC
TTCGAGCTGATGTTGTTCCTATGACTGCTGAAAACTTCAGATGTTTGTGC
ACACATGAGAAAGGATTTGGTTATCGCAAAAGCTCATTCCATAGGATAAT
CCCTGGATTTatGTGCCAGGGAGGTGATTTCACGAGAAATGATGGCACGG
GAGGAAAATCCATATTCGGTAAAAAgtttgaagatgaaaattttgtgttg
aaaCATACTTCTTCTGGTATAATGTCGATGGCCAACTCAGGGCCAAACAC
GAATGGATCGCAATTCTTCATTTGTACTGAAAAAACAGAATGGTTAGATG
GTAAACATGTTGTATTTGGGAAGGTGGTTCAAGGTATGGAAATTGTCAGA
AAAATGGAGAGTGTTGGAGCAGAGTCtgggaaaacaaaaaagaaagttgt
GATAGAGGACTGTGGTGAATTGAAATGAAGTAGTCTTCAACATGGCACTC
GTTTGTTGGAGATGCGCTGAATGGAGTATGCAACCCTGGCATGATAATGT
CTACAAAAACCAGTCAATGGTGAAATAAAGAATTAACCCAAGAACTATCG
AAGATGGAGCAATCTACTACACTTGCGATCTTTATAGAATTTGATGTCAT
TGGCATTTAATATTTAtcagaaaacaaatttttaaccgtttttcaaacta
tttgtaaaattttcttttaataactTTACAATGATAGGAGGGCTAGTATT
TTGACATAAGCTTTATGATACAGTTTACAAACGTTTTGTTTTCGAGAGAC
GATTTTAATTTTCGACCTTTGCTTTGACTCCAGTgttatttgtattttta
ttgttctttCTTAACTACCGGACCTTTAATTGGATTTGCAGACTCGAAAA
AATAAATCTACGTG
Run BLAST on NCBI

protein sequence of TCONS_00056163-protein

>TCONS_00056163-protein ID=TCONS_00056163-protein|Name=TCONS_00056163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MANKKIIYIGGLAEEVDDKMIQAAFIPFGDILDVNIPIDYETSKHRGFAF
LEFELAEDAAAAIDNMNESELCGRTIRCNIAKPMKNVEGASRAVWNSDDW
LQKHAANEGVDKENSGGEKGDGEKVAGQNQDETSSEPAAKKKRTNPKCYL
DISMNDQYAGRIVIELRADVVPMTAENFRCLCTHEKGFGYRKSSFHRIIP
GFMCQGGDFTRNDGTGGKSIFGKKFEDENFVLKHTSSGIMSMANSGPNTN
GSQFFICTEKTEWLDGKHVVFGKVVQGMEIVRKMESVGAESGKTKKKVVI
EDCGELK
Run BLAST on NCBI

transcript from alignment at scaffold_268:78320..81980-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056163 ID=TCONS_00056163|Name=TCONS_00056163|organism=Clytia hemisphaerica|type=transcript|length=3661bp|location=Sequence derived from alignment at scaffold_268:78320..81980- (Clytia hemisphaerica)
AATTATAGTCTCTTCTATTTACATTCAGAAATAAAAAAAACAACATTAGA
AATAAAGCAATAATACCATCAAAGACAATGTTATGAAAATAATGACACAC
TTTGGGTTGTGATTACATGAATAATACTTGCTGGTATCCCTACCACGTGG
CAATATGGCTAACAAAAAAATCATCTATATTGGTAACTCTCAATTTTTTT
TTAAATTGTTTATTTATGTTTGGTTTGGGTATGTGATTTTTCCCGGACTT
CTCTAAAAAACTCAAACAATTTCTTTGGCTACCAATTCTCTGCCCTAAAT
AGAAACCTATAATCTGCTCAATAAAATGTCCATCTCGTATCAATTTTTTC
TTTAATTTTAGGTGGTCTTGCTGAGGAGGTTGACGATAAAATGATTCAAG
CAGCGTTCATCCCGTTCGGTGATATATTAGACGTCAACATTCCTATCGAT
TACGAAACATCCAAACATAGAGGATTTGCATTTCTTGAATTCGAGCTAGC
GGAAGATGCAGCAGCCGCCATTGATAACATGAACGAAAGTGAACTGTGTG
GTCGAACCATTAGGTGCAATATTGCCAAACCGATGAAGAATGTGGAAGGA
GCTTCAAGAGCAGTGTGGAACAGTGATGATTGGCTACAGAAACATGCAGC
AAATGAGGGCGTCGATAAGGAAAATAGTGGCGGCGAAAAAGGCGACGGTG
AAAAAGTCGCAGGACAAAACCAAGATGAAGTAATTAATATATTCGTTAAT
ACTGCAGTGTTGATTTTAGATGCAATTCCTTTCTTTTTTTTTATGAAAAT
ATTCCACATTGTACTCAAAGTGTCCTAGTGACTTTGATAAGTGTTGGAAA
GTGATACCGGCTGACCCACGAAAAAGTATAAGAGTTTGGAGGGTAACTGT
GTCCGAAAAAAATTGAATTTTAACTAAATTCTCTTTTCGTGATAAAGAGG
AAAGGCAAACTTAAATTTTGATGTATCATTTTTTAATTTTGGAAAAGTAG
TTATCGAGATATGGCGGTATAAAGTCAAAAGTCATTATAAAAAATAGTCA
AAAAACGTCAAAAAAGATTTATTAATTAATTAATTAACAAATAAAAAGAG
ACATCGAGTGAGAAGCATATTTTAATTTCTTTTACCGGAAGGATGATAAA
GGTTGACAATTCTTTTTTAATCATATTTATTCATTTGGAAAAGTGCGACC
CCTAGCATTAATACAGCGACGATCCCTAGCCCTTTTTTTCTTAACGAAAA
GACAAAGAAATCGCAAATGATCAAAAGAAAGATGTTTGTTCTGATACAAA
TTTGTCTTTTTTGACGTTTTTTAACTGTTTTTTATAATGACTTTTGACTT
TATACTTCCATATCTCGATAACTACTTTTCCAAAAATAAAAAATGATACA
TCAAAATTTAAGTTTGCCTTTCCTCTTTACCACGAAAAGAGAATTTAGTT
AAAATTCTTTTTTTTTTCGGACACAGTTACCCTCCAAACTCTTATACTTT
TTCGTGGGTCACCCGGTAGTATCACCACATTTAAGTGAGATCCTTACTGA
ATGAAATAAATGCGGGCCTTCTTTTAAGCTTAGCAACGAGAAGTATATAA
TAACTAAAGACCTTTTCATTTCACCAGACATCTAGTGAGCCAGCTGCTAA
GAAGAAACGCACGAATCCTAAATGCTATCTGGACATCAGTATGAACGATC
AGTACGCTGGACGAATCGTTATTGAGCTTCGAGCTGATGTTGTTCCTATG
ACTGCTGGTATGTGAATTTTCTAGCAATTTCCTGATCATTGATAACTTCA
TCGTATTCTCATTATAACCTTTTCTTCCTTGAAAATTAATAAATGAACTA
AAGTTGCCCCTAAATGTTTTATTTGTTGTGTTAACTGTATAGATACTTCT
ACCCCTATTGTACTAATAGTTTGTTTGTTTTTTGTTGTTTTTTATCAGAA
AACTTCAGATGTTTGTGCACACATGAGAAAGGATTTGGTTATCGCAAAAG
CTCATTCCATAGGATAATCCCTGGATTTGTATCCTTTTCAAAGAATTTCT
TAATATTGTTTTCTAAATTCTACTAACTTCTACTAAGATCGCTTAAATAA
TTAGTTTTAAGATTTTATCAGATGATTAATAAAGAATACAATTTCCTTAA
CATTTTTATCAATAATAATAATAGATGTGCCAGGGAGGTGATTTCACGAG
AAATGATGGCACGGGAGGTAAAAGAACTACTTTCATATAATTTTGTTTGA
AAATCAGTGGAAATGTGGTACTTCCGGCGAATCTTCATCTGCGAACATTT
CGTCCGTGCGAATTTTTCTTCGGCACGCTAAATGTTTCTTCTTTTATGGA
ATATATAAATAATTTGTTCTAGAAATTCTGAAACATTATTGTAAAATGGT
AATATTATTTTGTATTCTGATTGTAATAAGATCGCTACTTACTTTGTTAT
TGAAATTTGTTTTGACTCTTTTTTATTCAGGAAAATCCATATTCGGTAAA
AAGTTTGAAGATGAAAATTTTGTGTTGAAACATACTTCTTCTGGTATAAT
GTCGATGGCCAACTCAGGGCCAAACACGAATGGATCGCAATTCTTCATTT
GTACTGAAAAAACAGAATGGTAAGAATATTCTCACAATAACTAAATTACC
CAGAATTACCTAGGTAGTCCATTTTTTTAGTTTATCATTATAGTCCATTT
TCTTTGAATACTGCGAGACTATATATTGGTTGTATGTACATTCTGCCAAT
GCTGTGATTGATTCATCGCTATTTCTCATTCCATATTGTCAGCAGAGCTG
AAAGACTCATGATGAATTATTAAACTATATACGTTTCTAAAACTACAGGT
TAGATGGTAAACATGTTGTATTTGGGAAGGTGGTTCAAGGTATGGAAATT
GTCAGAAAAATGGAGGTATGTTTTATGGTTTTCTGCACCCATTAAATTGG
ATGCTAATCTGACTACTCTGAATGGATTCGCAGAAAATAGGAACTGAGTG
AATCGCTTGAATTCTCACATTAATTTATTTTGCTGTTGTCGGTAATGGTT
CGTGTATGTTATTCTCCAACCTCTTTGGGAATATTATAATGAGATTGATC
AGCGTAAACAAGTTTTCCTGTATAATAAAGATTTTTGAATTTGAATTGAA
TTTTAGAGTGTTGGAGCAGAGTCTGGGAAAACAAAAAAGAAAGTTGTGAT
AGAGGACTGTGGTGAATTGAAATGAAGTAGTCTTCAACATGGCACTCGTT
TGTTGGAGATGCGCTGAATGGAGTATGCAACCCTGGCATGATAATGTCTA
CAAAAACCAGTCAATGGTGAAATAAAGAATTAACCCAAGAACTATCGAAG
ATGGAGCAATCTACTACACTTGCGATCTTTATAGAATTTGATGTCATTGG
CATTTAATATTTATCAGAAAACAAATTTTTAACCGTTTTTCAAACTATTT
GTAAAATTTTCTTTTAATAACTTTACAATGATAGGAGGGCTAGTATTTTG
ACATAAGCTTTATGATACAGTTTACAAACGTTTTGTTTTCGAGAGACGAT
TTTAATTTTCGACCTTTGCTTTGACTCCAGTGTTATTTGTATTTTTATTG
TTCTTTCTTAACTACCGGACCTTTAATTGGATTTGCAGACTCGAAAAAAT
AAATCTACGTG

Coding sequence (CDS) from alignment at scaffold_268:78320..81980-

>TCONS_00056163 ID=TCONS_00056163|Name=TCONS_00056163|organism=Clytia hemisphaerica|type=CDS|length=7392bp|location=Sequence derived from alignment at scaffold_268:78320..81980- (Clytia hemisphaerica)
AGTGTTGGAGCAGAGTCTGGGAAAACAAAAAAGAAAGTTGTGATAGAGGA
CTGTGGTGAATTGAAATGAGTTAGATGGTAAACATGTTGTATTTGGGAAG
GTGGTTCAAGGTATGGAAATTGTCAGAAAAATGGAGGAAAATCCATATTC
GGTAAAAAGTTTGAAGATGAAAATTTTGTGTTGAAACATACTTCTTCTGG
TATAATGTCGATGGCCAACTCAGGGCCAAACACGAATGGATCGCAATTCT
TCATTTGTACTGAAAAAACAGAATGATGTGCCAGGGAGGTGATTTCACGA
GAAATGATGGCACGGGAGAAAACTTCAGATGTTTGTGCACACATGAGAAA
GGATTTGGTTATCGCAAAAGCTCATTCCATAGGATAATCCCTGGATTTAC
ATCTAGTGAGCCAGCTGCTAAGAAGAAACGCACGAATCCTAAATGCTATC
TGGACATCAGTATGAACGATCAGTACGCTGGACGAATCGTTATTGAGCTT
CGAGCTGATGTTGTTCCTATGACTGCTGGTGGTCTTGCTGAGGAGGTTGA
CGATAAAATGATTCAAGCAGCGTTCATCCCGTTCGGTGATATATTAGACG
TCAACATTCCTATCGATTACGAAACATCCAAACATAGAGGATTTGCATTT
CTTGAATTCGAGCTAGCGGAAGATGCAGCAGCCGCCATTGATAACATGAA
CGAAAGTGAACTGTGTGGTCGAACCATTAGGTGCAATATTGCCAAACCGA
TGAAGAATGTGGAAGGAGCTTCAAGAGCAGTGTGGAACAGTGATGATTGG
CTACAGAAACATGCAGCAAATGAGGGCGTCGATAAGGAAAATAGTGGCGG
CGAAAAAGGCGACGGTGAAAAAGTCGCAGGACAAAACCAAGATGAAATGG
CTAACAAAAAAATCATCTATATTGAGTGTTGGAGCAGAGTCTGGGAAAAC
AAAAAAGAAAGTTGTGATAGAGGACTGTGGTGAATTGAAATGAGTTAGAT
GGTAAACATGTTGTATTTGGGAAGGTGGTTCAAGGTATGGAAATTGTCAG
AAAAATGGAGGAAAATCCATATTCGGTAAAAAGTTTGAAGATGAAAATTT
TGTGTTGAAACATACTTCTTCTGGTATAATGTCGATGGCCAACTCAGGGC
CAAACACGAATGGATCGCAATTCTTCATTTGTACTGAAAAAACAGAATGA
TGTGCCAGGGAGGTGATTTCACGAGAAATGATGGCACGGGAGAAAACTTC
AGATGTTTGTGCACACATGAGAAAGGATTTGGTTATCGCAAAAGCTCATT
CCATAGGATAATCCCTGGATTTACATCTAGTGAGCCAGCTGCTAAGAAGA
AACGCACGAATCCTAAATGCTATCTGGACATCAGTATGAACGATCAGTAC
GCTGGACGAATCGTTATTGAGCTTCGAGCTGATGTTGTTCCTATGACTGC
TGGTGGTCTTGCTGAGGAGGTTGACGATAAAATGATTCAAGCAGCGTTCA
TCCCGTTCGGTGATATATTAGACGTCAACATTCCTATCGATTACGAAACA
TCCAAACATAGAGGATTTGCATTTCTTGAATTCGAGCTAGCGGAAGATGC
AGCAGCCGCCATTGATAACATGAACGAAAGTGAACTGTGTGGTCGAACCA
TTAGGTGCAATATTGCCAAACCGATGAAGAATGTGGAAGGAGCTTCAAGA
GCAGTGTGGAACAGTGATGATTGGCTACAGAAACATGCAGCAAATGAGGG
CGTCGATAAGGAAAATAGTGGCGGCGAAAAAGGCGACGGTGAAAAAGTCG
CAGGACAAAACCAAGATGAAATGGCTAACAAAAAAATCATCTATATTGAG
TGTTGGAGCAGAGTCTGGGAAAACAAAAAAGAAAGTTGTGATAGAGGACT
GTGGTGAATTGAAATGAGTTAGATGGTAAACATGTTGTATTTGGGAAGGT
GGTTCAAGGTATGGAAATTGTCAGAAAAATGGAGGAAAATCCATATTCGG
TAAAAAGTTTGAAGATGAAAATTTTGTGTTGAAACATACTTCTTCTGGTA
TAATGTCGATGGCCAACTCAGGGCCAAACACGAATGGATCGCAATTCTTC
ATTTGTACTGAAAAAACAGAATGATGTGCCAGGGAGGTGATTTCACGAGA
AATGATGGCACGGGAGAAAACTTCAGATGTTTGTGCACACATGAGAAAGG
ATTTGGTTATCGCAAAAGCTCATTCCATAGGATAATCCCTGGATTTACAT
CTAGTGAGCCAGCTGCTAAGAAGAAACGCACGAATCCTAAATGCTATCTG
GACATCAGTATGAACGATCAGTACGCTGGACGAATCGTTATTGAGCTTCG
AGCTGATGTTGTTCCTATGACTGCTGGTGGTCTTGCTGAGGAGGTTGACG
ATAAAATGATTCAAGCAGCGTTCATCCCGTTCGGTGATATATTAGACGTC
AACATTCCTATCGATTACGAAACATCCAAACATAGAGGATTTGCATTTCT
TGAATTCGAGCTAGCGGAAGATGCAGCAGCCGCCATTGATAACATGAACG
AAAGTGAACTGTGTGGTCGAACCATTAGGTGCAATATTGCCAAACCGATG
AAGAATGTGGAAGGAGCTTCAAGAGCAGTGTGGAACAGTGATGATTGGCT
ACAGAAACATGCAGCAAATGAGGGCGTCGATAAGGAAAATAGTGGCGGCG
AAAAAGGCGACGGTGAAAAAGTCGCAGGACAAAACCAAGATGAAATGGCT
AACAAAAAAATCATCTATATTGAGTGTTGGAGCAGAGTCTGGGAAAACAA
AAAAGAAAGTTGTGATAGAGGACTGTGGTGAATTGAAATGAGTTAGATGG
TAAACATGTTGTATTTGGGAAGGTGGTTCAAGGTATGGAAATTGTCAGAA
AAATGGAGGAAAATCCATATTCGGTAAAAAGTTTGAAGATGAAAATTTTG
TGTTGAAACATACTTCTTCTGGTATAATGTCGATGGCCAACTCAGGGCCA
AACACGAATGGATCGCAATTCTTCATTTGTACTGAAAAAACAGAATGATG
TGCCAGGGAGGTGATTTCACGAGAAATGATGGCACGGGAGAAAACTTCAG
ATGTTTGTGCACACATGAGAAAGGATTTGGTTATCGCAAAAGCTCATTCC
ATAGGATAATCCCTGGATTTACATCTAGTGAGCCAGCTGCTAAGAAGAAA
CGCACGAATCCTAAATGCTATCTGGACATCAGTATGAACGATCAGTACGC
TGGACGAATCGTTATTGAGCTTCGAGCTGATGTTGTTCCTATGACTGCTG
GTGGTCTTGCTGAGGAGGTTGACGATAAAATGATTCAAGCAGCGTTCATC
CCGTTCGGTGATATATTAGACGTCAACATTCCTATCGATTACGAAACATC
CAAACATAGAGGATTTGCATTTCTTGAATTCGAGCTAGCGGAAGATGCAG
CAGCCGCCATTGATAACATGAACGAAAGTGAACTGTGTGGTCGAACCATT
AGGTGCAATATTGCCAAACCGATGAAGAATGTGGAAGGAGCTTCAAGAGC
AGTGTGGAACAGTGATGATTGGCTACAGAAACATGCAGCAAATGAGGGCG
TCGATAAGGAAAATAGTGGCGGCGAAAAAGGCGACGGTGAAAAAGTCGCA
GGACAAAACCAAGATGAAATGGCTAACAAAAAAATCATCTATATTGAGTG
TTGGAGCAGAGTCTGGGAAAACAAAAAAGAAAGTTGTGATAGAGGACTGT
GGTGAATTGAAATGAGTTAGATGGTAAACATGTTGTATTTGGGAAGGTGG
TTCAAGGTATGGAAATTGTCAGAAAAATGGAGGAAAATCCATATTCGGTA
AAAAGTTTGAAGATGAAAATTTTGTGTTGAAACATACTTCTTCTGGTATA
ATGTCGATGGCCAACTCAGGGCCAAACACGAATGGATCGCAATTCTTCAT
TTGTACTGAAAAAACAGAATGATGTGCCAGGGAGGTGATTTCACGAGAAA
TGATGGCACGGGAGAAAACTTCAGATGTTTGTGCACACATGAGAAAGGAT
TTGGTTATCGCAAAAGCTCATTCCATAGGATAATCCCTGGATTTACATCT
AGTGAGCCAGCTGCTAAGAAGAAACGCACGAATCCTAAATGCTATCTGGA
CATCAGTATGAACGATCAGTACGCTGGACGAATCGTTATTGAGCTTCGAG
CTGATGTTGTTCCTATGACTGCTGGTGGTCTTGCTGAGGAGGTTGACGAT
AAAATGATTCAAGCAGCGTTCATCCCGTTCGGTGATATATTAGACGTCAA
CATTCCTATCGATTACGAAACATCCAAACATAGAGGATTTGCATTTCTTG
AATTCGAGCTAGCGGAAGATGCAGCAGCCGCCATTGATAACATGAACGAA
AGTGAACTGTGTGGTCGAACCATTAGGTGCAATATTGCCAAACCGATGAA
GAATGTGGAAGGAGCTTCAAGAGCAGTGTGGAACAGTGATGATTGGCTAC
AGAAACATGCAGCAAATGAGGGCGTCGATAAGGAAAATAGTGGCGGCGAA
AAAGGCGACGGTGAAAAAGTCGCAGGACAAAACCAAGATGAAATGGCTAA
CAAAAAAATCATCTATATTGAGTGTTGGAGCAGAGTCTGGGAAAACAAAA
AAGAAAGTTGTGATAGAGGACTGTGGTGAATTGAAATGAGTTAGATGGTA
AACATGTTGTATTTGGGAAGGTGGTTCAAGGTATGGAAATTGTCAGAAAA
ATGGAGGAAAATCCATATTCGGTAAAAAGTTTGAAGATGAAAATTTTGTG
TTGAAACATACTTCTTCTGGTATAATGTCGATGGCCAACTCAGGGCCAAA
CACGAATGGATCGCAATTCTTCATTTGTACTGAAAAAACAGAATGATGTG
CCAGGGAGGTGATTTCACGAGAAATGATGGCACGGGAGAAAACTTCAGAT
GTTTGTGCACACATGAGAAAGGATTTGGTTATCGCAAAAGCTCATTCCAT
AGGATAATCCCTGGATTTACATCTAGTGAGCCAGCTGCTAAGAAGAAACG
CACGAATCCTAAATGCTATCTGGACATCAGTATGAACGATCAGTACGCTG
GACGAATCGTTATTGAGCTTCGAGCTGATGTTGTTCCTATGACTGCTGGT
GGTCTTGCTGAGGAGGTTGACGATAAAATGATTCAAGCAGCGTTCATCCC
GTTCGGTGATATATTAGACGTCAACATTCCTATCGATTACGAAACATCCA
AACATAGAGGATTTGCATTTCTTGAATTCGAGCTAGCGGAAGATGCAGCA
GCCGCCATTGATAACATGAACGAAAGTGAACTGTGTGGTCGAACCATTAG
GTGCAATATTGCCAAACCGATGAAGAATGTGGAAGGAGCTTCAAGAGCAG
TGTGGAACAGTGATGATTGGCTACAGAAACATGCAGCAAATGAGGGCGTC
GATAAGGAAAATAGTGGCGGCGAAAAAGGCGACGGTGAAAAAGTCGCAGG
ACAAAACCAAGATGAAATGGCTAACAAAAAAATCATCTATATTGAGTGTT
GGAGCAGAGTCTGGGAAAACAAAAAAGAAAGTTGTGATAGAGGACTGTGG
TGAATTGAAATGAGTTAGATGGTAAACATGTTGTATTTGGGAAGGTGGTT
CAAGGTATGGAAATTGTCAGAAAAATGGAGGAAAATCCATATTCGGTAAA
AAGTTTGAAGATGAAAATTTTGTGTTGAAACATACTTCTTCTGGTATAAT
GTCGATGGCCAACTCAGGGCCAAACACGAATGGATCGCAATTCTTCATTT
GTACTGAAAAAACAGAATGATGTGCCAGGGAGGTGATTTCACGAGAAATG
ATGGCACGGGAGAAAACTTCAGATGTTTGTGCACACATGAGAAAGGATTT
GGTTATCGCAAAAGCTCATTCCATAGGATAATCCCTGGATTTACATCTAG
TGAGCCAGCTGCTAAGAAGAAACGCACGAATCCTAAATGCTATCTGGACA
TCAGTATGAACGATCAGTACGCTGGACGAATCGTTATTGAGCTTCGAGCT
GATGTTGTTCCTATGACTGCTGGTGGTCTTGCTGAGGAGGTTGACGATAA
AATGATTCAAGCAGCGTTCATCCCGTTCGGTGATATATTAGACGTCAACA
TTCCTATCGATTACGAAACATCCAAACATAGAGGATTTGCATTTCTTGAA
TTCGAGCTAGCGGAAGATGCAGCAGCCGCCATTGATAACATGAACGAAAG
TGAACTGTGTGGTCGAACCATTAGGTGCAATATTGCCAAACCGATGAAGA
ATGTGGAAGGAGCTTCAAGAGCAGTGTGGAACAGTGATGATTGGCTACAG
AAACATGCAGCAAATGAGGGCGTCGATAAGGAAAATAGTGGCGGCGAAAA
AGGCGACGGTGAAAAAGTCGCAGGACAAAACCAAGATGAAATGGCTAACA
AAAAAATCATCTATATTGAGTGTTGGAGCAGAGTCTGGGAAAACAAAAAA
GAAAGTTGTGATAGAGGACTGTGGTGAATTGAAATGAGTTAGATGGTAAA
CATGTTGTATTTGGGAAGGTGGTTCAAGGTATGGAAATTGTCAGAAAAAT
GGAGGAAAATCCATATTCGGTAAAAAGTTTGAAGATGAAAATTTTGTGTT
GAAACATACTTCTTCTGGTATAATGTCGATGGCCAACTCAGGGCCAAACA
CGAATGGATCGCAATTCTTCATTTGTACTGAAAAAACAGAATGATGTGCC
AGGGAGGTGATTTCACGAGAAATGATGGCACGGGAGAAAACTTCAGATGT
TTGTGCACACATGAGAAAGGATTTGGTTATCGCAAAAGCTCATTCCATAG
GATAATCCCTGGATTTACATCTAGTGAGCCAGCTGCTAAGAAGAAACGCA
CGAATCCTAAATGCTATCTGGACATCAGTATGAACGATCAGTACGCTGGA
CGAATCGTTATTGAGCTTCGAGCTGATGTTGTTCCTATGACTGCTGGTGG
TCTTGCTGAGGAGGTTGACGATAAAATGATTCAAGCAGCGTTCATCCCGT
TCGGTGATATATTAGACGTCAACATTCCTATCGATTACGAAACATCCAAA
CATAGAGGATTTGCATTTCTTGAATTCGAGCTAGCGGAAGATGCAGCAGC
CGCCATTGATAACATGAACGAAAGTGAACTGTGTGGTCGAACCATTAGGT
GCAATATTGCCAAACCGATGAAGAATGTGGAAGGAGCTTCAAGAGCAGTG
TGGAACAGTGATGATTGGCTACAGAAACATGCAGCAAATGAGGGCGTCGA
TAAGGAAAATAGTGGCGGCGAAAAAGGCGACGGTGAAAAAGTCGCAGGAC
AAAACCAAGATGAAATGGCTAACAAAAAAATCATCTATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035359XLOC_035359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056163-exon-scaffold_268-1575043694:81799..81980TCONS_00056163-exon-scaffold_268-1575043694:81799..81980Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1575043694:81252..81619TCONS_00056163-exon-scaffold_268-1575043694:81252..81619Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1575043694:80224..80353TCONS_00056163-exon-scaffold_268-1575043694:80224..80353Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1575043694:79953..80032TCONS_00056163-exon-scaffold_268-1575043694:79953..80032Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1575043694:79764..79806TCONS_00056163-exon-scaffold_268-1575043694:79764..79806Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1575043694:79362..79500TCONS_00056163-exon-scaffold_268-1575043694:79362..79500Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1575043694:79066..79132TCONS_00056163-exon-scaffold_268-1575043694:79066..79132Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1575043694:78320..78824TCONS_00056163-exon-scaffold_268-1575043694:78320..78824Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:81799..81980TCONS_00056163-exon-scaffold_268-1510915933:81799..81980Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:81252..81619TCONS_00056163-exon-scaffold_268-1510915933:81252..81619Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:80224..80353TCONS_00056163-exon-scaffold_268-1510915933:80224..80353Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:79953..80032TCONS_00056163-exon-scaffold_268-1510915933:79953..80032Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:79764..79806TCONS_00056163-exon-scaffold_268-1510915933:79764..79806Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:79362..79500TCONS_00056163-exon-scaffold_268-1510915933:79362..79500Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:79066..79132TCONS_00056163-exon-scaffold_268-1510915933:79066..79132Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1510915933:78320..78824TCONS_00056163-exon-scaffold_268-1510915933:78320..78824Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:81799..81980TCONS_00056163-exon-scaffold_268-1491911889:81799..81980Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:81252..81619TCONS_00056163-exon-scaffold_268-1491911889:81252..81619Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:80224..80353TCONS_00056163-exon-scaffold_268-1491911889:80224..80353Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:79953..80032TCONS_00056163-exon-scaffold_268-1491911889:79953..80032Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:79764..79806TCONS_00056163-exon-scaffold_268-1491911889:79764..79806Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:79362..79500TCONS_00056163-exon-scaffold_268-1491911889:79362..79500Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:79066..79132TCONS_00056163-exon-scaffold_268-1491911889:79066..79132Clytia hemisphaericaexon
TCONS_00056163-exon-scaffold_268-1491911889:78320..78824TCONS_00056163-exon-scaffold_268-1491911889:78320..78824Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056163-proteinTCONS_00056163-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:78320..81980 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
224.774	226.083	200.972	195.565	114.128	87.028	103.493	111.548	99.9067	91.3444	76.3494	67.2628	50.9872	54.5467	61.1464	65.5532	91.8175	90.1147	28.8704	29.2734	67.6312	64.2711	93.9804	86.0936	78.1082	81.0414	44.5838	35.1686	56.8787	57.9196
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR000504RRM_dom
IPR029000Cyclophilin-like_dom
IPR016304PPIE
IPR020892Cyclophilin-type_PPIase_CS
IPR034168PPIE_RRM
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00056163 vs. Swiss-Prot (Human)
Match: PPIE (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 1.817e-131
Identity = 195/304 (64.14%), Postives = 246/304 (80.92%), Query Frame = 2 
Query:  158 ANKKIIYIGGLAEEVDDKMIQAAFIPFGDILDVNIPIDYETSKHRGXXXXXXXXXXXXXXXIDNMNESELCGRTIRCNIAKPMKNVEGASRAVWNSDDWLQKHAANEGVDKENSGGEKGDGEKVAGQNQDETSSEPAAKKKRTNPKCYLDISMNDQYAGRIVIELRADVVPMTAENFRCLCTHEKGFGYRKSSFHRIIPGFMCQGGDFTRNDGTGGKSIFGKKFEDENFVLKHTSSGIMSMANSGPNTNGSQFFICTEKTEWLDGKHVVFGKVVQGMEIVRKMESVGAESGKTKKKVVIEDCGE 1069
              K+++Y+GGLAEEVDDK++ AAFIPFGDI D+ IP+DYET KHRGFAF+EFELAEDAAAAIDNMNESEL GRTIR N+AKPM+  EG+SR VW+ DDWL+K +         +  E  + E       +    EP AKK R+NP+ Y+DI + ++ AGRI + LR+DVVPMTAENFRCLCTHEKGFG++ SSFHRIIP FMCQGGDFT ++GTGGKSI+GKKF+DENF+LKHT  G++SMANSGPNTNGSQFF+  +KT+WLDGKHVVFG+V +G++++R++E+ G++ GK K+KV+I DCGE
Sbjct:    3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK-------TLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299
The following BLAST results are available for this feature:
BLAST of TCONS_00056163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIE1.817e-13164.14Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
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