TCONS_00056163-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056163-protein
Unique NameTCONS_00056163-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056163-protein ID=TCONS_00056163-protein|Name=TCONS_00056163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MANKKIIYIGGLAEEVDDKMIQAAFIPFGDILDVNIPIDYETSKHRGFAF
LEFELAEDAAAAIDNMNESELCGRTIRCNIAKPMKNVEGASRAVWNSDDW
LQKHAANEGVDKENSGGEKGDGEKVAGQNQDETSSEPAAKKKRTNPKCYL
DISMNDQYAGRIVIELRADVVPMTAENFRCLCTHEKGFGYRKSSFHRIIP
GFMCQGGDFTRNDGTGGKSIFGKKFEDENFVLKHTSSGIMSMANSGPNTN
GSQFFICTEKTEWLDGKHVVFGKVVQGMEIVRKMESVGAESGKTKKKVVI
EDCGELK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035359XLOC_035359Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056163TCONS_00056163Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR000504RRM_dom
IPR029000Cyclophilin-like_dom
IPR016304PPIE
IPR020892Cyclophilin-type_PPIase_CS
IPR034168PPIE_RRM
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPRINTSPR00153CSAPPISMRASEcoord: 238..253
score: 75.34
coord: 266..281
score: 64.73
coord: 195..207
score: 78.83
coord: 166..181
score: 59.93
coord: 253..265
score: 68.52
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00160Pro_isomerasecoord: 150..304
e-value: 8.2E-48
score: 162.6
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPROSITEPS50072CSA_PPIASE_2coord: 149..305
score: 43.298
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 6..79
e-value: 3.2E-23
score: 93.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 7..77
e-value: 1.5E-19
score: 69.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 5..83
score: 17.865
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 3..88
NoneNo IPR availableGENE3D3.30.70.330coord: 2..124
e-value: 1.3E-22
score: 79.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..142
NoneNo IPR availableCDDcd01926cyclophilin_ABH_likecoord: 146..304
e-value: 4.58391E-105
score: 305.721
IPR029000Cyclophilin-like domainGENE3D2.40.100.10coord: 132..307
e-value: 2.2E-73
score: 245.3
IPR029000Cyclophilin-like domainSUPERFAMILY50891Cyclophilin-likecoord: 142..306
IPR016304Peptidyl-prolyl cis-trans isomerase EPIRSFPIRSF001475Cyclophilin_Ecoord: 1..307
e-value: 5.0E-153
score: 506.4
IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved sitePROSITEPS00170CSA_PPIASE_1coord: 190..207
IPR034168Peptidyl-prolyl cis-trans isomerase E, RNA recognition motifCDDcd12347RRM_PPIEcoord: 7..79
e-value: 3.76301E-43
score: 143.517

Blast
[Close]
BLAST of TCONS_00056163-protein vs. Swiss-Prot (Human)
Match: PPIE (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 1.426e-149
Identity = 195/304 (64.14%), Postives = 246/304 (80.92%), Query Frame = 0 
Query:    2 ANKKIIYIGGLAEEVDDKMIQAAFIPFGDILDVNIPIDYETSKHRGFAFLEFELAEDAAAAIDNMNESELCGRTIRCNIAKPMKNVEGASRAVWNSDDWLQKHAANEGVDKENSGGEKGDGEKVAGQNQDETSSEPAAKKKRTNPKCYLDISMNDQYAGRIVIELRADVVPMTAENFRCLCTHEKGFGYRKSSFHRIIPGFMCQGGDFTRNDGTGGKSIFGKKFEDENFVLKHTSSGIMSMANSGPNTNGSQFFICTEKTEWLDGKHVVFGKVVQGMEIVRKMESVGAESGKTKKKVVIEDCGE 305
              K+++Y+GGLAEEVDDK++ AAFIPFGDI D+ IP+DYET KHRGFAF+EFELAEDAAAAIDNMNESEL GRTIR N+AKPM+  EG+SR VW+ DDWL+K +         +  E  + E       +    EP AKK R+NP+ Y+DI + ++ AGRI + LR+DVVPMTAENFRCLCTHEKGFG++ SSFHRIIP FMCQGGDFT ++GTGGKSI+GKKF+DENF+LKHT  G++SMANSGPNTNGSQFF+  +KT+WLDGKHVVFG+V +G++++R++E+ G++ GK K+KV+I DCGE
Sbjct:    3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGK-------TLEENKEEEGSEPPKAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299
The following BLAST results are available for this feature:
BLAST of TCONS_00056163-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIE1.426e-14964.14Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
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