TCONS_00055955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055955
Unique NameTCONS_00055955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055955 ID=TCONS_00055955|Name=TCONS_00055955|organism=Clytia hemisphaerica|type=transcript|length=1718bp
GGCACAAAATgaaacttgaagaaaatttgCCTTAATTTAATATCTACCCT
AAAGATGAACATTTTTCTAATATTGTTGCTCTTCACACGAATCATCAATT
GGAAACgataaataaagaaattcaaaatggtggaGTTTAACAAGGAGCCA
TTGGTAGTTTGGCTCCAATCTTATTTGGATGGCCCAATTACATCAAATGc
ggagctttcgaatggtattgCTCTAAGTACTGTTTTAAAGTTAATTGATC
CTGTTGTGTTCAACAATATTCGTATCCAACAAACCTTGATCAATGATACG
GCAACCAAAGCACAAAATCTCGTCGAAATTTTGCATTGTATCAAAAAGTT
TTATCAGGTAAAATTACAGCAGTTGATTATCATGAAGATGCCAGACATTT
TAACGGTTGCCAAGGAGCCTGAAACAGAATTGAGTCGGAAGGAAATGACA
ACCATTTTGCTTCTCATACTTGGTTGCGCAGTTCAGTGCGATCGAAAGGA
AGAGTTCATCGAACACATCACCGAAATGGATGTACAAATTCAACGAGGAC
TCGTCGCTTCTATCCAAGAGATCACAGAAAACCAAGAAAATGTTATACCA
TATCGAGTGAGCGAGCTCAGTGAAATGCCGCAGCAGAATCTTGTGACATT
GGCGGAGAGCTTGTACTATCAACTTCAAAAAGTGTTGGAACAGACCGATG
AATATGTTGAGACGATATTAGATTTGGCGTTGCTTCAAGAAAACGATGAA
CATAATGATTCTTTTGAGGAATCACCGAGGTTTCGTCCACGCAATCCACT
TATTCCCAAAACTAGCTTTAGATCCACCAATATACTGCAGGCTAACCGTC
AAAGACTACAAAGTATTCAGGCTGATCTAGACGATCGTAACGCGTACATC
AATGAACTGAAGGAAGACTTGGATAATTGTAAACGACAATTGGATAATGT
TCGATTAGAGAATAAGCAACTTGTAAATGAAGCAGCTTGGGCAAAATCTT
ACCGTGATGAACTCGACATCCTAAAAGCTGAGATCGAGCAAAATGCGAAA
TACCAAGCAGAAAATGTGAAATTGAAGGAAAAGATACGAGATATGGAATA
CTATAAGAATAAATACGAGGAGATCAAGGAGCAGTCAGATTTCTTGTACG
AAAGTAAACTCATCCTAGAAGAGAGAGTTGCAGGATCGAGTTCCAAGATT
ACTCGATTCACTCGCTTAGAAGAGGAGAATTCTCGTTTGTATTCTCAAGT
GAAAGTCTTGATGGAGGAACGAGAAGACGATCAAAAGAGGATAAGAGATC
TCGTTGACGAGGTTGCTAAGCTATCAATGGAAAAACAAGAAACACTGTCA
GCTTGTTCTGTGATGAATGCAGAGTTGGATGGTTTGAGACTACAGAAAGA
CGGAGATGGTTTGAATATGCCATTGATGATGGAATACAGCCAATCTACCG
ATTTCATGCGCCTGGAACGTGAAAACAAACACCTGATCAACCTTATCGAG
AATCTTCGCACTTCAACACCTGATAGCAGAGCTCGTCAACTAGAGGAAGA
AAACCGTGCATTGTCagataatatttttgaatacaAGACAATGATATCGA
AGTTGACTAAGacacacagacagacggACAGGAAGACAATATTTACATAT
TAttctttatataatttttatatttttgttgcaTTATGGGGTACCGTTAG
TGGTCTTGGTATCCTgaa
Run BLAST on NCBI

transcript from alignment at scaffold_266:607217..616049+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055955 ID=TCONS_00055955|Name=TCONS_00055955|organism=Clytia hemisphaerica|type=transcript|length=8833bp|location=Sequence derived from alignment at scaffold_266:607217..616049+ (Clytia hemisphaerica)
GGCACAAAATgaaacttgaagaaaatttgCCTTAATTTAATATCTACCCT AAAGATGAACATTTTTCTAATATTGTTGCTCTTCACACGAATCATCAATT GGAAACgataaataaagaaattcaaaatggtggaGTTTAACAAGGAGCCA TTGGTAGTTTGGGTGAGTATGATGCTTTTTAGTttacttttataaaaaac aaaaagatccAGAAAGATCCCTGTACCAATCATATCTTAAATATCTCTCT CGCAAAATATTTTACAGTCCTAAAGGACATAATTTTAtgtatctcctacc atttgccCACACcgcatttaaaaaaaagaaagaacaattttttatccCTT TTGCGCCGAGCGAGCAcaaatcttgagaaaatctATTATTCATTCTACTT TGTCAGCCAGAGTCGTGCCTCGTTTCTATATCATTCAAAAGATAGCTTTA ACCCCTTGTGGGGCCTCATTAAGTGACAAATTGCGTTTTATAGAATTTTC GTTCCATGAATTCTTAACTGAATCGAAGCCTGCATTGTGTCTCTATAACT AGAACACGCACTATGAGCAACACAAatctgttcgagttatggaaatttcg agctatggagtaaggtttataaggcattgttaactgaaggggcgagaaaa cttgttcgagttaaggagacattcaaaTAGAGATTCGAGGTAAAGAGACT CTTTTGTTATTAACTACCACCTGTTTTCCTTAGCTCCAATCTTATTTGGA TGGCCCAATTACATCAAATGcggagctttcgaatggtattgCTCTAAGTA CTGTTTTAAAGTTAATGTAAGTTATACTAGTTTTTGACGATAATTTATAC AAATTTGTATGATCAACTGCTTTGTCCGGTATTTACAGTATTCTTTCTAT ATATGCGAGTTAGTTTGGTACTGACGATATattataccttattacacgaa tattactagtcattttattaacaggaattgaaaaatttcgtgttaataaa aaaccccttaattaaaattagaaagcagaaaaattcgtgttaatttcaga tcgtgcaaatttcaaggccgttaaatacttgcctagtaatatttgtgtaa taaatAAGATAATTTGCGAAAGCATTCAGTGCAAGTGTATATGTCCGCTT TGCACAACAATCCAAACCCAAGTGGTTTCACGCCTTGACACaactagcct gtaccaaacttcTTCACGTGAAAGCCACACGAAGTTCGACACAgggaaag atttttcaaaaaaacaaattaatatCTTGCGTGGGCTTTTAGGATGGTAC AGACTATAAATGGTCTTGTATCTGgtacctctaattagcggacactatcA GGGAAACGGATAAGTGTCCGTTATTTAGTATTTCAAAGTTAATGGAAGCG TTTAGGTTCTGAGCAAATTATATTGACAATTTTCTTAGGAGTAGACCTTT CAATAAATTaggtcacgaacatcacttgcctcgtgttgaaattattgcca tggtgatcaaCTCCCAGAGGATTTTACTTAAACtactttcttttcataaa aaaattatttaatgtctcaagagacataatcaccgtagtaattgtttgaa aacgaggcaagtgatgttcgtgaagTAATTTATGCAAAGGtgtattgttt ttgaaataattgatGATTTCTATCTTTAGTGATCCTGTTGTGTTCAACAA TATTCGTATCCAACAAACCTTGATCAATGATACGGCAACCAAAGCACAAA ATCTCGTCGAAATTTTGCATTGTATCAAAAAGTTTTATCAGGTAAGTTTT AGCTTAGTCCCATCATGCTTCTCATCACATTCTATAATTATTGACGATCA AAAATTGTTGCTCAtcataacaaaaaaataaatcaccaaACAAGTCAAAA GAATATTGGGCTGAGGTTGATAACATTCCGTCGCAGGTTTCACAAAGGTA AACCCACTGACCTTTACATTCCCTGGACCAGGCTATTTCCTATTTCCTat cttttttggaattggtacacgagaagaagccattgcaatgttaaaaatta acgtctaaaggccggtctccacttacgCGCGCTTCGATCACACTTTTTCG AGCAatgcttccacgctattggtcaaaagaaaaatgaagcaattccattg gcgtgatctgacgtaacgtttgaaaaaagttgaaatgtgttcaacttttt tttcgagcgcgcgctacattctcgtcacgtaatcttttttccaagcaaaa agtattgaagccaaaaagtgcgatcgcagcgcgcgcaagtggagaccggc ctttaagaatgtagcgcgcgctcgaaaaaaaagttgaacacatttcaact tttctcaaccgttacgtcagatcgcgccgatggagttgcttcatttttct tttgaccaatgtattcgaggaaaagtagatctatcgctctcgatgcattt tcaccgctattgagtagtgccgccattagggtaccaatttcaaaaatctc cgatcaaagatttttggtaggccgggattgagtaacttggtccagggtat ataaaggtcagtgggtaaACCCTATAACGCTACTTTTCGATTCTAATGTT TACTTTTACTCATCGATGATTTTCTCTTCGAAACTTTCAGGTAAAATTAC AGCAGTTGATTATCATGAAGATGCCAGACATTTTAACGGTTGCCAAGGAG CCTGAAACAGGTCAGCATTTGATTTTGATACATGGAGTTTAATATACTGC TCAGATTATGTCGTGATCATCCCTAAATCAAGTTTATTGTACCCCTATAT CAGAGCTAACGAAAGTCGTCGCTTACTTTTTCGTTGTATATCATTACAAC GTCTTTACTATATCAATATGGACTGTATTTGTATAAAAATTGGTGTTCCC CCAATCCCTTTCAAGTCGAGTAAAGTCAAAATAGAAACTTACTTTCGACC TCATTATCACTGAAATTGTATCAGATAATTCACCATGACAAGAAAGCCGT ATAAACCGTATAAAAAACGCCTCGGTATGGACTGGAGCTACAAGGGAAAC TCAATTCTAATCCGTAACAAAATCTTCctaaatttcatttaaattcaGCG ACGAAGAATACTTCTCTTTCTCTTTCATGTCAAATGAAACATTTCCCGAT ATTATTTTAGAATTGAGTCGGAAGGAAATGACAACCATTTTGCTTCTCAT ACTTGGTTGCGCAGTTCAGGTACGGTGATAGTTCAACATATTTCAGCCAC CATTTTATTTCAAcagtattgaaaataaatttttagttACGTTTGAGAGT TTTTTCTCCTATTTTTGTTTGATAGTCTTTATAACTTCGCAAGCATATAA TAAGATATATACCAGCATGATTTCATTTGTAATTTCTTGACTCCTCACTT TCTTCTCCCTAATGCGGCCTCTCTATGAATATGAAAGCAGAGCATTATCT TGTTTCTCCATAAGGATAGAGTGGGTTGCGTTTCAGCACTTTTATCCCAG ATCTTTTATCTTCTCATTAGTGCGATCGAAAGGAAGAGTTCATCGAACAC ATCACCGAAATGGATGTACAAATTCAACGAGGACTCGTCGCTTCTATCCA AGAGGTATTTTTCTTTCGCTTTCTTTTCCAAGTCGAAGTGTGTGACAAGA GAGAAGTATGATAAGTTTGATTAATGGGGGTATTCAAGGCGACGATAACG AAGCTGATATTTAAAGCCAAGTTTATCAAAACTCATGCAGAATATCAGTA CTGTCAGCACCACTGATGAATaaagaattttcaataattttcttgCAGAT CACAGAAAACCAAGAAAATGTTATACCATATCGAGTGAGCGAGCTCAGTG AAATGCCGCAGCAGTAAGTATAATTCCTTTTCTACGGGtttggctcttcc agaaaatgtccgtacatgttTTACATGTCCGTAAATATTGTCAAGGGGGT TAGATCCGCTGTCCGTATGGTTATAAGTCATAATGTCCGGGggataaatt tccaaaaaatgttatatcctatCTGTGTATTCAAACAATATATAAAGGCA AAACGAAGTTCCTATTCAATTGATTAAATTGACCTTAATTATAAGTTATT TAATAAACAACCCTTCTTTCAAACACcactcgaataaacgccccttctaa aaactaagaaatttagtaaacgccccccccccccccccgttgaaTCTAAG TAATACGGTACTTTCAACAGGAATCTTGTGACATTGGCGGAGAGCTTGTA CTATCAACTTCAAAAAGTGTTGGAACAGACCGATGAATATGTTGAGGTGA GTGCGCCTTGTTTTGAGTTTTTCAATATTCCAGGATTAAGTGAAGTTACT TTAGAAAATTGTGAGATATGCTGAAGTTTTAACATTATTATTAAAGACTG AactaaatttcttctttttcaatcgGCAGACGATATTAGATTTGGCGTTG CTTCAAGAAAACGATGAACATAATGATTCTTTTGAGGTGAGCTCCCTTCA TGTTTCAATTATTGTCTCTCTCTGATGGATGGGCGCCCCAAAAATGCAGG TTGTTAAGTAATTAGGAAATAGATATGTACGTTAAACAACTCATTTAGCA CGGTTCAAACCTTGTATTTTCTTTTGTATCGTAACATGTTGCAAAGAGTC TTAGCGTTAGAATTCTATTTCCTGGTGGAAATTTAGTCTAAAACACTTTT TCGTTCGAGTTCTTCTCACAATTGACTTCATATTAAATTTCAGGAATCAC CGAGGTTTCGTCCACGCAATCCACTTATTCCCAAAACTAGCTTTAGATCC ACCAATATACTGCAGGCTAACCGTCAAAGACTACAAAGTATTCAGGCTGA TCTGTAAGTTAAACTTCTAACATTTTCGAGTctgaaaagtagatctagcc gGTTGAGCTTGAAAGGACCTTTTTTCCATTGACCTCGCCATTTTACCCTC CACCGTCCGTTTTTCTTACTTAGCGAGTACTTAACATTTCTCAATATCTT TGACTCgccgttgacaaatcaaaagaGCCAATCACAAAATTAGTGTCTGG GAAAGCTAAGATTTTTTTTGTCTAGCTAGCTTAAAATTTGAGATAGGCCC ATTTTGTATAGTGAGGAGGGTTCCATCTATATGAAACAGGGTCAATCTAT AAAAAATTCATGCTCAGGCAAACATAAAAATTCTTCGTTTTCTCAGgcaa taattttgagattggaccttttgTCAACGGCAAACTAGAGATTGAAATTT AGTTGATATATTTAGTGTCTGTGAAACTAAATGAGACATGTCCAGATATT TGATGCGACTTTATTAAAATCTTCAGAGACGATCGTAACGCGTACATCAA TGAACTGAAGGAAGACTTGGATAATTGTAAACGACAATTGGATAATGTTC GATTAGAGGTTTGTTGTTTTACCTACATGCAGTACAGTGCTGACCTTTGT CTTTCTATCCCATCGATATCTTAACTCTTTGTGAATCTTGAGGGTGGGGC AAGTAGCCTTGAGCCCCCACCTCCCTCTTCCGCAGacaaaaataaagata tttccctggtaaaaaaaagaaaattgtcaaagaaaaaatcttttcgaaAT GGTAATAATAAGTTTATTAATAGCTGATGAAATGATAAGAAATTAATCAA TTGTGTTTACTTCTTGAGATTCTTATTGTGATTTTGCTTTGTCATATTAT AGAATAAGCAACTTGTAAATGAAGCAGCTTGGGCAAAATCTTACCGTGAT GAACTCGACATCCTAAAAGCTGAGGTAAATATTCAGATCTCTAAATCGCA CAATGAAACGATCATACACAAAATTATTACATCGTTATAGTACTCGTAAT GAACCAATCACGGTCGAATATTAAACTCGACATGGCGAAAAATTCACTCA ACTCGATAAATTTGATTTCATGTATTTCATTTGGTTTCTCTTACTAATTT TAGATCGAGCAAAATGCGAAATACCAAGCAGAAAATGTGAAATTGAAGGA AAAGATACGAGATATGGAATACTATAAGAATAAATACGAGGTTTGTTCTT Attataaaattgaatttaaaactaaccattttttatttataagaaccaaa AAGATGTCTAGGCTGTTAAAAACTGAGGTCGATATATTCTGTGTAGGAGA AAATTACCCAATCGGATTGAGttagataaaaaatcttttacttcttTACA TCTTATCGGAATTTAATTCGTAAAAAATCTGCCAGTCTGTCTccttgttt ttaaaaatgttttctttcacATCGTATCATTCCTGTCTATAGGAGATCAA GGAGCAGTCAGATTTCTTGTACGAAAGTAAACTCATCCTAGAAGAGAGAG TTGCAGGATCGAGTTCCAAGATTACTCGATTCACTCGCTTAGAAGAGGAG AATTCTCGTTTGTATTCTCAAGTGAAAGTCTTGATGGAGGAACGAGAAGA CGATCAAAAGAGGATAAGAGATCTCGTTGACGAGGTTGCTAAGCTATCAA TGGAAAAACAAGAAACGTAAGCTCTTTTTTATTTGAGAttctcttttttt gaaaatcaatatgGGAGCTTATATTGTGAGTTTTCAAGGCTGAAGTCTTT TTTCCCGAATAATGGAAATATACAAGGTTTTCTCTGATCTACAATCCTGG CCATAAACAATTGGAACAAACATCTTTTTCAGCTTTTGTAGTATATATAC TGGTACTAAAGTGCCTTTCCTCCCCCTCCCCCATTGTTGAGCTCTGATTT GCTCCTGTTGCTTATCAACAATGAGGGAGGGAAGAAGGGAAGGAGCTAGT GGTAGTTCATAGAAGAAAATTCCAATATTTATGGCCACGCTCTTAGCCTA GATCGTCACGCCActgtatttttcctttttgctATTTATCTCCTCAAAAC TTTCGTGCGTCCCAGAATATTATGATTTATCGATTTTCCAATTTCTATTT GTACGCAGACTGTCAGCTTGTTCTGTGATGAATGCAGAGTTGGATGGTTT GAGACTACAGAAAGACGGAGATGGTACGTAACAAAAAATCGTTTTTGTAC GACCATTGGTTCACTTCACTTTTTATACATTCATTCGTTTTGCTCAAATT CCAAATAATCGAAAGCTGCATATGTTTAAACGGGAGACATTGACTTAAAC ATTGACTTTCaaccccgaagggctagactccaGACTCccggatgggaaat gaaactacttatttcccatccagaacgcccgcgcgttgttttcacacaaa cgccaggttgaaactaaaatctatcgctagatttcgaaAGATGCAGTcgt caaaaacaaaggaatcgctagatACATACAATCcatcgtcatgattacgg cgcgctctaggcgcgttttggatgggaaataaatggctTCACTTTTCTTG CCTGTGAAAGGTCTACTCTacatggctccgactggggttgtaggtccccc cgccaaatttaggtccccccctgatgttttcatttttgcattttaaggat cagatcacactctgcatgaaaacataaaggtATAGAGaaattaaactcaa tggttcgaACGATCGGATTTGACAATGCGTTAcgctttcaatttttcttt gactttctaGGTTTGAATATGCCATTGATGATGGAATACAGCCAGTAAGT ATTGCTTTAATGTGGTTTGTATGTTAAACGCGCGTGTCGAAAGGTAATTC AAAGAAGGGTCAATTGAACTTCAAATTCTAAATGTAAAGACACCAACATT ATTATAAGGGAATTAAAACTTTATTTCTCATCACAGATCTACCGATTTCA TGCGCCTGGAACGTGAAAACAAACACCTGATCAACCTTATCGAGAATCTT CGCACTTCAACACCTGATAGCAGAGCTCGTCAACTAGAGGAAGAAAACCG TGCATTGTCagataatatttttgaatacaAGACAATGATATCGAAGTTGA CTAAGGTAAGTGCGATCATAATTGCTGTCATTATAGCAGTAACTGTCACT CTTGTCTTCATTGTTAAAGTTTGACCATGGATAGGGATTTTACCCGTGGC TTTTGTTGAATCCGTCTTACGTTCTAAAAAGGACTGGTTTTAGAGTTTGT TTTTAACACCCGTTTAACGCATATACATTCCAACTAATGAAACTAATGcc tttttccctcttttttttccttaattttatttaattgaCCAAACGCACAT ACACTAATTAAATTCTAATAAAGTGAATTCTTTCATCGGAATTAATGACG ATTTTATTGGAAACTTTTATACCACGATGACTTTTCCTTCAACAACTAAA TTTTTTAAGGACATACCAATATTATACTTATAAAACTACTCAAGCCATTA ACACGAATTGGTTACGCTTGCGTTAAAAACAACCGTTTAACAAAAGGTAA TTTTTGTAGAACCTGTCTTTCGCATTATTAAATTGTACCGCTCTACATAC TTGGTTAGTTTatatataagtgtaataaggtaaatttatattttcatgat tttattactaaaattaagaatatttgtAGATTTTTTCTGTCTTCCTGTCT GCATCTGTTCAAGATTTTCTCCTCGCTCGAATTTAGTTGAGTTGTCTCAA aagcaaattttttctttctcgtgCAGGCAGGTAAGAAAGAAGACCCTACA AATATTCTGAAATTACTTACTAACCACCTTTGACTAATTGACTTACGtta cttaactttttttgacgAATTAcaagacacacagacagacggACAGGAAG ACAATATTTACATATTAttctttatataatttttatatttttgttgcaTT ATGGGGTACCGTTAGTGGTCTTGGTATCCTgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035223XLOC_035223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055955-exon-scaffold_266-1491911889:607217..607378TCONS_00055955-exon-scaffold_266-1491911889:607217..607378Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:607217..607378TCONS_00055955-exon-scaffold_266-1510915933:607217..607378Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:607217..607378TCONS_00055955-exon-scaffold_266-1575043694:607217..607378Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:607950..608032TCONS_00055955-exon-scaffold_266-1491911889:607950..608032Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:607950..608032TCONS_00055955-exon-scaffold_266-1510915933:607950..608032Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:607950..608032TCONS_00055955-exon-scaffold_266-1575043694:607950..608032Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:608896..609007TCONS_00055955-exon-scaffold_266-1491911889:608896..609007Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:608896..609007TCONS_00055955-exon-scaffold_266-1510915933:608896..609007Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:608896..609007TCONS_00055955-exon-scaffold_266-1575043694:608896..609007Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:609857..609926TCONS_00055955-exon-scaffold_266-1491911889:609857..609926Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:609857..609926TCONS_00055955-exon-scaffold_266-1510915933:609857..609926Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:609857..609926TCONS_00055955-exon-scaffold_266-1575043694:609857..609926Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:610377..610435TCONS_00055955-exon-scaffold_266-1491911889:610377..610435Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:610377..610435TCONS_00055955-exon-scaffold_266-1510915933:610377..610435Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:610377..610435TCONS_00055955-exon-scaffold_266-1575043694:610377..610435Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:610737..610820TCONS_00055955-exon-scaffold_266-1491911889:610737..610820Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:610737..610820TCONS_00055955-exon-scaffold_266-1510915933:610737..610820Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:610737..610820TCONS_00055955-exon-scaffold_266-1575043694:610737..610820Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:611015..611079TCONS_00055955-exon-scaffold_266-1491911889:611015..611079Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:611015..611079TCONS_00055955-exon-scaffold_266-1510915933:611015..611079Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:611015..611079TCONS_00055955-exon-scaffold_266-1575043694:611015..611079Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:611437..611512TCONS_00055955-exon-scaffold_266-1491911889:611437..611512Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:611437..611512TCONS_00055955-exon-scaffold_266-1510915933:611437..611512Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:611437..611512TCONS_00055955-exon-scaffold_266-1575043694:611437..611512Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:611646..611702TCONS_00055955-exon-scaffold_266-1491911889:611646..611702Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:611646..611702TCONS_00055955-exon-scaffold_266-1510915933:611646..611702Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:611646..611702TCONS_00055955-exon-scaffold_266-1575043694:611646..611702Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:611960..612069TCONS_00055955-exon-scaffold_266-1491911889:611960..612069Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:611960..612069TCONS_00055955-exon-scaffold_266-1510915933:611960..612069Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:611960..612069TCONS_00055955-exon-scaffold_266-1575043694:611960..612069Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:612543..612624TCONS_00055955-exon-scaffold_266-1491911889:612543..612624Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:612543..612624TCONS_00055955-exon-scaffold_266-1510915933:612543..612624Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:612543..612624TCONS_00055955-exon-scaffold_266-1575043694:612543..612624Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:612919..612990TCONS_00055955-exon-scaffold_266-1491911889:612919..612990Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:612919..612990TCONS_00055955-exon-scaffold_266-1510915933:612919..612990Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:612919..612990TCONS_00055955-exon-scaffold_266-1575043694:612919..612990Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:613170..613256TCONS_00055955-exon-scaffold_266-1491911889:613170..613256Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:613170..613256TCONS_00055955-exon-scaffold_266-1510915933:613170..613256Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:613170..613256TCONS_00055955-exon-scaffold_266-1575043694:613170..613256Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:613509..613732TCONS_00055955-exon-scaffold_266-1491911889:613509..613732Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:613509..613732TCONS_00055955-exon-scaffold_266-1510915933:613509..613732Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:613509..613732TCONS_00055955-exon-scaffold_266-1575043694:613509..613732Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:614175..614239TCONS_00055955-exon-scaffold_266-1491911889:614175..614239Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:614175..614239TCONS_00055955-exon-scaffold_266-1510915933:614175..614239Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:614175..614239TCONS_00055955-exon-scaffold_266-1575043694:614175..614239Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:614827..614860TCONS_00055955-exon-scaffold_266-1491911889:614827..614860Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:614827..614860TCONS_00055955-exon-scaffold_266-1510915933:614827..614860Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:614827..614860TCONS_00055955-exon-scaffold_266-1575043694:614827..614860Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:615003..615171TCONS_00055955-exon-scaffold_266-1491911889:615003..615171Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:615003..615171TCONS_00055955-exon-scaffold_266-1510915933:615003..615171Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:615003..615171TCONS_00055955-exon-scaffold_266-1575043694:615003..615171Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1491911889:615943..616049TCONS_00055955-exon-scaffold_266-1491911889:615943..616049Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1510915933:615943..616049TCONS_00055955-exon-scaffold_266-1510915933:615943..616049Clytia hemisphaericaexon
TCONS_00055955-exon-scaffold_266-1575043694:615943..616049TCONS_00055955-exon-scaffold_266-1575043694:615943..616049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:607217..616049 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25271 0.239382 0.432036 0 17.2679 13.8493 2.62902 2.14403 17.149 14.5705 12.4394 17.9998 0.448028 0.223815 2.97058 1.92221 0.179439 0.366179 0 0 0 8.23339e-09 0 0.407458 0 0.124895 3.75685 1.65045 0.160353 0.303686
Blast
BLAST of TCONS_00055955 vs. Swiss-Prot (Human)
Match: DAPLE (Protein Daple OS=Homo sapiens GN=CCDC88C PE=1 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 4.863e-61
Identity = 164/523 (31.36%), Postives = 295/523 (56.41%), Query Frame = 1
Query:  136 FNKEPLVVWLQSYLDGPITSNAE--------LSNGIALSTVLKLIDPVVFNNIRIQQTLINDTATKAQNLVEILHCIKKFYQVKLQQLIIMKMPDILTVAKEPETELSRKEMTTILLLILGCAVQCDRKEEFIEHITEMDVQIQRGLVASIQEITENQENVIPYRVSELSEMPQQNLVTLAESLYYQLQKVLEQTDEYVETILDLALLQENDEHNDSFEESPRFRPRNPLIPKTSFRSTNI------------------LQANRQRLQSIQADLDDRNAYINELKEDLDNCKRQLDNVRLENKQLVNEAAWAKSYRDELDILKAEIEQNAKYQAENVKLKEKIRDMXXXXXXXXXXXXQSDFLYESKLILEERVAGSSSKITRFTRLEEENSRLYSQVKVLMEEREDDQKRIRDLVDEVAKLSMEKQETLSACSVMNAELDGLRLQKD-GDGLNMPLMMEYSQ--STDFMRLERENKHLINLIENLRTST-----PDSRARQLEEENRALSDNIFEYKTMISK 1602
            F + PLV W++++  GP  S ++        L +GI L+ ++  IDP   N  RI + + ND   + QNL  ++  IK +YQ  LQQLI+M +P++L + ++P +  S +E+  +LLL+LGCAVQC+RKEEFIE I ++D++ Q G+VA IQE+T NQENV   +  EL ++  + L  L+ S+   L+++++Q DE  E I+DL   QE D            + ++P  P  S  + +                   L   + RL+ ++ +L+D+   + + + ++D    +L  V+ EN QL  +A  A++YRDELD L+ +  +  + + E  + KEK+ D+++YK + EE++E +  L E+K +LEE++  + ++  +   LE+EN +L S++  L  +R+ D+KRI +L++E   L + ++++++  + +  EL+ L    D  D      + E ++  S+  ++LE+EN+ L + I+ LR ++        +  +LE+EN  LS  I + +T + +
Sbjct:   12 FLQSPLVTWVKTF--GPFGSGSQDNLTMYMDLVDGIFLNQIMLQIDPRPTNQ-RINKHVNNDVNLRIQNLTILVRNIKTYYQEVLQQLIVMNLPNVLMIGRDPLSGKSMEEIKKVLLLVLGCAVQCERKEEFIERIKQLDIETQAGIVAHIQEVTHNQENVFDLQWLELPDVAPEELEALSRSMVLHLRRLIDQRDECTELIVDLT--QERD----------YLQAQHPPSPIKSSSADSTPSPTSSLSSEDKQHLAVELADTKARLRRVRQELEDKTEQLVDTRHEVDQLVLELQKVKQENIQLAADARSARAYRDELDSLREKANRVERLELELTRCKEKLHDVDFYKARMEELREDNIILIETKAMLEEQLTAARARGDKVHELEKENLQLKSKLHDLELDRDTDKKRIEELLEENMVLEIAQKQSMNESAHLGWELEQLSKNADLSDASRKSFVFELNECASSRILKLEKENQSLQSTIQGLRDASLVLEESGLKCGELEKENHQLSKKIEKLQTQLER 519          
The following BLAST results are available for this feature:
BLAST of TCONS_00055955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DAPLE4.863e-6131.36Protein Daple OS=Homo sapiens GN=CCDC88C PE=1 SV=3[more]
back to top