TCONS_00055553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055553
Unique NameTCONS_00055553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055553 ID=TCONS_00055553|Name=TCONS_00055553|organism=Clytia hemisphaerica|type=transcript|length=930bp
ATGAACTTGCTTGAGAAGTTGTTTGAAAGCATTTTGACCTTAGAGGTATT
TTCAGGAATTTTTTCTTTACTATTTCAAATAGAACACTTTTATGAAGTAA
AAGGTAGTAATTtcctttttcgatttttaatagAAGTTTTATAGGTCCAT
TTTGACTGTTTTGAGCATTTTcagcaaaactattttttttcattttccat
ggCATAATTTTGCCATGTAATGAAGAAGATTTCTAAGAAAATTCTTAGAA
TGCAAGAAATCAAAAAGTGTctattcaaaagttatgttatgATTATAATT
TCAGACTCAAACTCATTAAAATGCCTAAAATCTCAAAGATAGCAGTTTTT
GGAGCAAAATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGG
GAACTATTCTATTAATAAGATGATGTATCCAACAATAGCTGATAGTTATG
ATGCATGGGTAGATGCGGATCGTGGTCAAAAAGAAAGAATTCGAATATAT
GACTTACAAGGCCAGGATCCTGATCCTAACTTCATCTCTCCATCTCATCA
TATTCAAATTGCTGATGCATTTATTTTGGTATTCAGTGTGACGTCCAAAA
CAAGTTTTAGTGTTGtggaaaaattgagaaaagaaaTCGTAATATGTAGA
GGGAAAGATGTTCCAATAGTTGTTTTGGGTACGAAAGTGGATATGTCAGA
AACGCGGGAATGTCAACATAACGAAGTCATGAAATGGGCTGACCATGAAA
AAGTGAAATTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAA
CCAATCATGTATCTTCTGAAGAAATTGCCTTTATCTGCAGGGAAACGAGG
TGCAGATGTTAAACAAAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGA
GTAGTACATCTTCTGAATCGTGAAAATATA
Run BLAST on NCBI

protein sequence of TCONS_00055553-protein

>TCONS_00055553-protein ID=TCONS_00055553-protein|Name=TCONS_00055553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MPKISKIAVFGAKSVGKTSIIQQIVYGNYSINKMMYPTIADSYDAWVDAD
RGQKERIRIYDLQGQDPDPNFISPSHHIQIADAFILVFSVTSKTSFSVVE
KLRKEIVICRGKDVPIVVLGTKVDMSETRECQHNEVMKWADHEKVKLFEV
FVESRTTLQEPIMYLLKKLPLSAGKRGADVKQKLFGRGQKSKESSTSSES
Run BLAST on NCBI

transcript from alignment at scaffold_253:1028530..1032595-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055553 ID=TCONS_00055553|Name=TCONS_00055553|organism=Clytia hemisphaerica|type=transcript|length=4066bp|location=Sequence derived from alignment at scaffold_253:1028530..1032595- (Clytia hemisphaerica)
ATGAACTTGCTTGAGAAGTTGTTTGAAAGCATTTTGACCTTAGAGGTATT
TTCAGGAATTTTTTCTTTACTATTTCAAATAGAACACTTTTATGAAGTAA
AAGGTAGTAATTTCCTTTTTCGATTTTTAATAGAAGTTTTATAGGTCCAT
TTTGACTGTTTTGAGCATTTTCAGCAAAACTATTTTTTTTCATTTTCCAT
GGCATAATTTTGCCATGTAATGAAGAAGATTTCTAAGAAAATTCTTAGAA
TGCAAGAAATCAAAAAGTGTCTATTCAAAAGTTATGTTATGATTATAATT
TCAGACTCAAACTCATTAAAATGCCTAAAATCTCAAAGATAGCAGTTTTT
GGAGCAAAATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGG
GAACTATTCTATTAATAAGGTAAACATTCAATTTTGTATTTCTTTTTTCA
ACTTCATGCAATTGAAAGAAAGACAAAATAGTATTGTTGATATCTTGTCA
ATCCTGAAATTTGAAAACCTAAAATGCACTTCTTTCCATTTAGCTTTGTC
GAATGATATTTTAAAAATAATCTTTTTACTACAATAAGGTAATAAGATAA
ATTGTTATTCATTCTTGTGTGTCATTGTATGGTTTGGAATTGGAGAGGTT
CTTTTTCACAGACGTTGTTTGAAATAATAAGTTTCCCATAACATTTACTT
CATAGATGATGTATCCAACAATAGCTGATAGTTATGATGCATGGGTAGAT
GCGGATCGTGGTCAAAAAGAAAGAATTCGAATATATGACTTACAAGGCCA
GGTATCTCTACTGCAATAATTTTGTGTAGGGGATATATCAGGGATACTAC
AATCTTTGACTAAATATTCTGGCAGAAATTCCTTTCCCTCCTTATATCAA
TGTTGACACATGGAAGGCTGCCACCGGACGTACAAAATCCTCACATCAAC
ACTAATATTAGGGGGAGAATTTTCTAAGAATTGGCCACAATTTAAGTCAC
ATATTGTAGATTTAGCCAAAGGAATACTTTTTATTTAATACAGCGAGGTT
TTATACATGAAGTTGGCTTTTTTGTTAAAATGTTGATCTTTTTGCTTTAC
AGGATCCTGATCCTAACTTCATCTCTCCATCTCATCATATTCAAATTGCT
GATGTAAGCATTCTTTTCAATTGTAATTTTTACACCAATTTTCTGTGTTG
GTGATCCTTTTTCAATTTATATTTTAATTAATAATATCTAGGGCCTTCTT
TAAAATCTTAACACGAGATTAAAAATCCTCTCAATTATTTTTAATATTCA
TCTATTATAAATGTATCATTTATTCGAAAACTCTCCTTGTATTAACTTTA
TTTTCATTTCCAGGCATTTATTTTGGTATTCAGTGTGACGTCCAAAACAA
GTTTTAGTGTTGTGGAAAAATTGAGAAAAGAAATCGTAATATGTAGAGGG
AAAGATGTAAGTCTAGTAGTCTATTTTTTATATCTCTCAGCCAAAAAAAA
AAACTTTATGTCTATACTTTAGACGATACTATCATCTGGTACACGTATCA
TCTGATACACGTTTTTTACCACCCCCTTCTCACAGAACCGCTAGGATTTT
TTCAGCTAGTGGGGATAAAAATAGCAGACAAAAACTCTATGGGGATTGAA
ATTTCCATGTTTTTTTTGGCTGGGCCTCTACATTCCATTATCTTCAAGTC
AAAAAATTCAGTGGGAATGAGAAATAGCATGGTATTTTGCATTGAGGATT
GGTTTATTTGATTCTTTTTAGTGGGAACAAAAATTTGAGTAAAGTTTTCC
ACTGGGGGCGGTATTTTGGCTAATTTTTCCAGTGTGAACGGCTCCCAGTG
GGTCTGTGAGAAGGGGTGTTTTTATCATGATCTGATCATTTCAGGCTTGA
ATATTCCCAAGTCTTTATCTCAAAAGTATATTTATGTAGCTTAAACGTTC
AATGGTTTAAGTTAAAAAAAACATTTCACCATAGCAAACCAAGCGTCTTT
ATTATAAATTTAAGTTTGAATTTTTATTGAGTAATTGATTTTTTGCTTGT
CATACCTAGGTTCCAATAGTTGTTTTGGGTACGAAAGTGGATATGTCAGA
AACGCGGGAATGTCAACATAACGAAGTCATGAAATGGGCTGACCATGAAA
AAGGTTTGACATACGTAGTTTTGTTTTATGAGCGCCGGATTTATACAGGA
TGTCCCGAAAAAACTTGTGTCAGAACACGACTACAAGTAGTAAGGTGTTT
GTTCCTGTATGTCTAGTTTTTCTAGTTACAATGAAACAGAAACGCAATAA
ACTTATAAACATAATTAAATTATCAATTGTGTAATAAAACATTTCAATGA
ACGTCTCATTCAAACAAAGTATGAAAAGACATTAACGATCGCATTATACA
AGAACATGTAAATACTATTTTTGACTTGCACACACACGTTAGCCTTTCTA
CTTGTAGTCGTGTTCTGACACAGGACTTTTTTCCGGGACACCCTGTATAA
GGGGGGGGGGGCGTACGGGGTTTGCGATTTCCGAAATACCTTAAAAAATG
CTTGCAATTCCGATACCGATTTTTTGAGTATTTTCCTCGTTTTGACTAAT
TTTTTTTCATCAAATTTGATTTTTCATGTATGAATTCCGAAAAAGGGGGA
TAAAAACTTTATAATACTGAAATTCCAAAGCAAAACTTCATGGATTTCCG
ATACCGAAACAATTTCAGCATTCCGAAATACCGAAGGAATTTTGCCCGAT
TTCTGAAATTCCGAAGAAAAAAGGGTCGATTTCCGCAATTCCGAAATACC
GTACGCCCCCACTGTATATCTCTAAGCAGCTCCAATTCCATAATAAGCAC
TGCCCTGCAATGACAAATGTATTTTTTTTATTACCCAACACGTCACTTGC
AAACAATCAACTTTTATAAAAGTGTCATTGTAGAGAATTAGAGATGCATA
TCATAAAAAATAAAAAATCTCTTTCTGTATTTTACTCGTTATCATGACAG
ATTTTACTTCATCCTTTCATCTTTGGTAGCTTGCACAAGAATTAAGAAAG
TTTCACTGAGTATTACTACCGCACTAGATATAATGTTACGGGAGTATAAT
TAATTTGGGAGTCTACTCTCCATCAGACTCGACAATATGCCATGTTCTAA
AAACCTTGAAATGTTGATTCAGAACCCAAGAATCCCGAGCCTTGGCTGGT
ATCTTCATAAAGTGTTCTACTTAGTTAAAAAAGAACGGGTAGCAAGCTAT
TTATCATTTGTTTTGTTTATCGGGAATTGTAACCCAAGAGCTTGAGCACA
CTATCCTTGTTTTATGATTGTGCACCAATAATAAATCTATCGTTTTCAAT
TCTTCCATCGTAAGCTTTCAAAACAGTATTAATGCAATTAAATTTAAAGC
AGTGAATCTACAATCTATTGATATTCAAATCATCTACTAAGTATCAGCGT
ATCTAAATTTTTGATTTGACTATTGACTACTACCCAAAATTTATTTATCT
GAAAGACTTCACTTGATCTAAAATAGGTCTAATAGGTCTACTATATAATA
TCAGCAGCTAAATAATTTCCGCATGCGATTATAAAGTCTCCAAAAGTCTA
GAAAGGTTTTTGTAGATATTTATGTTTGATATGGAGTATCATATATTTTA
TATGTTAGTGAAATTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTAC
AAGAACCAATCATGTATCTTCTGAAGAAATTGCCTTTATCTGCAGGTATG
TTTTAGAATACTTTTTAAAATGACAGTTTATCGATTGTAAATGTTAATTC
GTGGATTGGACCAAGCGAACTTATTTGTTCGAGTAAGACCAGAAAAGGTT
CTACTACTAATAAAATCGAATGAAAAAGTGGTTCAGTAAGTTCGATATAG
CGGAGATGATGGTTGATAATGTACCTACAAAAGTTTGTTTTATAATCGTA
ATGTATCTTCCTCCTTCTCTTTTTAGGGAAACGAGGTGCAGATGTTAAAC
AAAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACATCTTCT
GAATCGTGAAAATATA

Coding sequence (CDS) from alignment at scaffold_253:1028530..1032595-

>TCONS_00055553 ID=TCONS_00055553|Name=TCONS_00055553|organism=Clytia hemisphaerica|type=CDS|length=4221bp|location=Sequence derived from alignment at scaffold_253:1028530..1032595- (Clytia hemisphaerica)
GGAAACGAGGTGCAGATGTTAAACAAAAGTTATTTGGGCGTGGTCAGAAA
TCGAAAGAGAGTAGTACATCTTCTGAATCGTGATGAAATTATTCGAAGTG
TTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTATCTTCTGAA
GAAATTGCCTTTATCTGCAGGTTCCAATAGTTGTTTTGGGTACGAAAGTG
GATATGTCAGAAACGCGGGAATGTCAACATAACGAAGTCATGAAATGGGC
TGACCATGAAAAAGGCATTTATTTTGGTATTCAGTGTGACGTCCAAAACA
AGTTTTAGTGTTGTGGAAAAATTGAGAAAAGAAATCGTAATATGTAGAGG
GAAAGATGATCCTGATCCTAACTTCATCTCTCCATCTCATCATATTCAAA
TTGCTGATATGATGTATCCAACAATAGCTGATAGTTATGATGCATGGGTA
GATGCGGATCGTGGTCAAAAAGAAAGAATTCGAATATATGACTTACAAGG
CCAGATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAAATCTGTGG
GTAAAACATCCATTATTCAACAAATTGTTTATGGGAACTATTCTATTAAT
AAGGGAAACGAGGTGCAGATGTTAAACAAAAGTTATTTGGGCGTGGTCAG
AAATCGAAAGAGAGTAGTACATCTTCTGAATCGTGATGAAATTATTCGAA
GTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTATCTTCT
GAAGAAATTGCCTTTATCTGCAGGTTCCAATAGTTGTTTTGGGTACGAAA
GTGGATATGTCAGAAACGCGGGAATGTCAACATAACGAAGTCATGAAATG
GGCTGACCATGAAAAAGGCATTTATTTTGGTATTCAGTGTGACGTCCAAA
ACAAGTTTTAGTGTTGTGGAAAAATTGAGAAAAGAAATCGTAATATGTAG
AGGGAAAGATGATCCTGATCCTAACTTCATCTCTCCATCTCATCATATTC
AAATTGCTGATATGATGTATCCAACAATAGCTGATAGTTATGATGCATGG
GTAGATGCGGATCGTGGTCAAAAAGAAAGAATTCGAATATATGACTTACA
AGGCCAGATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAAATCTG
TGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAACTATTCTATT
AATAAGGGAAACGAGGTGCAGATGTTAAACAAAAGTTATTTGGGCGTGGT
CAGAAATCGAAAGAGAGTAGTACATCTTCTGAATCGTGATGAAATTATTC
GAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTATCT
TCTGAAGAAATTGCCTTTATCTGCAGGTTCCAATAGTTGTTTTGGGTACG
AAAGTGGATATGTCAGAAACGCGGGAATGTCAACATAACGAAGTCATGAA
ATGGGCTGACCATGAAAAAGGCATTTATTTTGGTATTCAGTGTGACGTCC
AAAACAAGTTTTAGTGTTGTGGAAAAATTGAGAAAAGAAATCGTAATATG
TAGAGGGAAAGATGATCCTGATCCTAACTTCATCTCTCCATCTCATCATA
TTCAAATTGCTGATATGATGTATCCAACAATAGCTGATAGTTATGATGCA
TGGGTAGATGCGGATCGTGGTCAAAAAGAAAGAATTCGAATATATGACTT
ACAAGGCCAGATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAAAT
CTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAACTATTCT
ATTAATAAGGGAAACGAGGTGCAGATGTTAAACAAAAGTTATTTGGGCGT
GGTCAGAAATCGAAAGAGAGTAGTACATCTTCTGAATCGTGATGAAATTA
TTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTA
TCTTCTGAAGAAATTGCCTTTATCTGCAGGTTCCAATAGTTGTTTTGGGT
ACGAAAGTGGATATGTCAGAAACGCGGGAATGTCAACATAACGAAGTCAT
GAAATGGGCTGACCATGAAAAAGGCATTTATTTTGGTATTCAGTGTGACG
TCCAAAACAAGTTTTAGTGTTGTGGAAAAATTGAGAAAAGAAATCGTAAT
ATGTAGAGGGAAAGATGATCCTGATCCTAACTTCATCTCTCCATCTCATC
ATATTCAAATTGCTGATATGATGTATCCAACAATAGCTGATAGTTATGAT
GCATGGGTAGATGCGGATCGTGGTCAAAAAGAAAGAATTCGAATATATGA
CTTACAAGGCCAGATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAA
AATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAACTAT
TCTATTAATAAGGGAAACGAGGTGCAGATGTTAAACAAAAGTTATTTGGG
CGTGGTCAGAAATCGAAAGAGAGTAGTACATCTTCTGAATCGTGATGAAA
TTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCAT
GTATCTTCTGAAGAAATTGCCTTTATCTGCAGGTTCCAATAGTTGTTTTG
GGTACGAAAGTGGATATGTCAGAAACGCGGGAATGTCAACATAACGAAGT
CATGAAATGGGCTGACCATGAAAAAGGCATTTATTTTGGTATTCAGTGTG
ACGTCCAAAACAAGTTTTAGTGTTGTGGAAAAATTGAGAAAAGAAATCGT
AATATGTAGAGGGAAAGATGATCCTGATCCTAACTTCATCTCTCCATCTC
ATCATATTCAAATTGCTGATATGATGTATCCAACAATAGCTGATAGTTAT
GATGCATGGGTAGATGCGGATCGTGGTCAAAAAGAAAGAATTCGAATATA
TGACTTACAAGGCCAGATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAG
CAAAATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAAC
TATTCTATTAATAAGGGAAACGAGGTGCAGATGTTAAACAAAAGTTATTT
GGGCGTGGTCAGAAATCGAAAGAGAGTAGTACATCTTCTGAATCGTGATG
AAATTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAAT
CATGTATCTTCTGAAGAAATTGCCTTTATCTGCAGGTTCCAATAGTTGTT
TTGGGTACGAAAGTGGATATGTCAGAAACGCGGGAATGTCAACATAACGA
AGTCATGAAATGGGCTGACCATGAAAAAGGCATTTATTTTGGTATTCAGT
GTGACGTCCAAAACAAGTTTTAGTGTTGTGGAAAAATTGAGAAAAGAAAT
CGTAATATGTAGAGGGAAAGATGATCCTGATCCTAACTTCATCTCTCCAT
CTCATCATATTCAAATTGCTGATATGATGTATCCAACAATAGCTGATAGT
TATGATGCATGGGTAGATGCGGATCGTGGTCAAAAAGAAAGAATTCGAAT
ATATGACTTACAAGGCCAGATGCCTAAAATCTCAAAGATAGCAGTTTTTG
GAGCAAAATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGG
AACTATTCTATTAATAAGGGAAACGAGGTGCAGATGTTAAACAAAAGTTA
TTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACATCTTCTGAATCGTG
ATGAAATTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACC
AATCATGTATCTTCTGAAGAAATTGCCTTTATCTGCAGGTTCCAATAGTT
GTTTTGGGTACGAAAGTGGATATGTCAGAAACGCGGGAATGTCAACATAA
CGAAGTCATGAAATGGGCTGACCATGAAAAAGGCATTTATTTTGGTATTC
AGTGTGACGTCCAAAACAAGTTTTAGTGTTGTGGAAAAATTGAGAAAAGA
AATCGTAATATGTAGAGGGAAAGATGATCCTGATCCTAACTTCATCTCTC
CATCTCATCATATTCAAATTGCTGATATGATGTATCCAACAATAGCTGAT
AGTTATGATGCATGGGTAGATGCGGATCGTGGTCAAAAAGAAAGAATTCG
AATATATGACTTACAAGGCCAGATGCCTAAAATCTCAAAGATAGCAGTTT
TTGGAGCAAAATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTAT
GGGAACTATTCTATTAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034939XLOC_034939Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055553-proteinTCONS_00055553-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055553-exon-scaffold_253-1575043694:1032177..1032595TCONS_00055553-exon-scaffold_253-1575043694:1032177..1032595Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1575043694:1031795..1031890TCONS_00055553-exon-scaffold_253-1575043694:1031795..1031890Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1575043694:1031443..1031493TCONS_00055553-exon-scaffold_253-1575043694:1031443..1031493Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1575043694:1031140..1031232TCONS_00055553-exon-scaffold_253-1575043694:1031140..1031232Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1575043694:1030443..1030536TCONS_00055553-exon-scaffold_253-1575043694:1030443..1030536Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1575043694:1028851..1028937TCONS_00055553-exon-scaffold_253-1575043694:1028851..1028937Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1575043694:1028530..1028619TCONS_00055553-exon-scaffold_253-1575043694:1028530..1028619Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1510915933:1032177..1032595TCONS_00055553-exon-scaffold_253-1510915933:1032177..1032595Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1510915933:1031795..1031890TCONS_00055553-exon-scaffold_253-1510915933:1031795..1031890Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1510915933:1031443..1031493TCONS_00055553-exon-scaffold_253-1510915933:1031443..1031493Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1510915933:1031140..1031232TCONS_00055553-exon-scaffold_253-1510915933:1031140..1031232Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1510915933:1030443..1030536TCONS_00055553-exon-scaffold_253-1510915933:1030443..1030536Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1510915933:1028851..1028937TCONS_00055553-exon-scaffold_253-1510915933:1028851..1028937Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1510915933:1028530..1028619TCONS_00055553-exon-scaffold_253-1510915933:1028530..1028619Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1491911889:1032177..1032595TCONS_00055553-exon-scaffold_253-1491911889:1032177..1032595Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1491911889:1031795..1031890TCONS_00055553-exon-scaffold_253-1491911889:1031795..1031890Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1491911889:1031443..1031493TCONS_00055553-exon-scaffold_253-1491911889:1031443..1031493Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1491911889:1031140..1031232TCONS_00055553-exon-scaffold_253-1491911889:1031140..1031232Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1491911889:1030443..1030536TCONS_00055553-exon-scaffold_253-1491911889:1030443..1030536Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1491911889:1028851..1028937TCONS_00055553-exon-scaffold_253-1491911889:1028851..1028937Clytia hemisphaericaexon
TCONS_00055553-exon-scaffold_253-1491911889:1028530..1028619TCONS_00055553-exon-scaffold_253-1491911889:1028530..1028619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:1028530..1032595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.5807	20.5918	9.16175	7.70778	29.2005	20.8848	20.0694	18.082	17.4945	14.8011	13.3026	11.9257	10.0107	9.01121	11.4914	11.0667	12.3729	13.6913	4.32032	6.8971	13.8521	14.5916	30.1766	28.2376	12.0433	14.6579	5.64261	5.67746	13.2518	12.8736
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00055553 vs. Swiss-Prot (Human)
Match: KBRS1 (NF-kappa-B inhibitor-interacting Ras-like protein 1 OS=Homo sapiens GN=NKIRAS1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.096e-31
Identity = 75/170 (44.12%), Postives = 102/170 (60.00%), Query Frame = 3 
Query:  321 MPKISKIAVFGAKSVGKTSIIQQIVYGNYSINKMMYPTIADSYDAWVDADRGQKERIRIYDLQGQDPDPNFISPSHHIQIADAFILXXXXXXXXXXXXXEKLRKEIVICRG-KDVPIVVLGTKVDMSETRECQHNEVMKWADHEKVKLFEVFVESRTTLQEPIMYLLKKL 827
            M K  K+ V G  SVGKT+I++Q++YGN++I      T+ D Y A V+ DRG KE++ +YD +G         P H+   AD F+LV+SV +  SF  VE L+KEI   +  K+V IVVLG K+D+SE R+       +WA  EKV+L+EV V  R TL EP   L  KL
Sbjct:    1 MGKGCKVVVCGLLSVGKTAILEQLLYGNHTIGMEDCETMEDVYMASVETDRGVKEQLHLYDTRGLQEGVEL--PKHYFSFADGFVLVYSVNNLESFQRVELLKKEIDKFKDKKEVAIVVLGNKIDLSEQRQVDAEVAQQWAKSEKVRLWEVTVTDRKTLIEPFTLLASKL 168
The following BLAST results are available for this feature:
BLAST of TCONS_00055553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KBRS19.096e-3144.12NF-kappa-B inhibitor-interacting Ras-like protein ... [more]
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