TCONS_00055513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055513
Unique NameTCONS_00055513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055513 ID=TCONS_00055513|Name=TCONS_00055513|organism=Clytia hemisphaerica|type=transcript|length=1867bp
GGAAATGAGGTCATTTCATGGGTTAGAAGTGACGTTTGATTTGAATGTAA
CcaatggcttcattttgtttcagAGAGAAACGAAACCGTAGCGTGTGAAC
CTGGTCTTTAAGCAACCTAGAGACATTTCAATTCTTATGATTGGCAATca
tttgaacaattttgaaaatatccaTCATGAaggtaaaatttattttagac
tGCAATGGCAGCAATGAAGAATGAGCAAAAGGGAAGTTTTATCAACACTG
GGAAgacaggaggatggaaaaacAAACTCACTGAAGAAACTATTGAGAGA
TTTAAAAAATGGGAAGGGAAATGGTTGAAGGACACTGGATTAATGTTTGC
Ttatgaagtttgattttttatttaatatcatttatttaattttttagtta
gcattttacaattattttttaaaagattgaaacttttttttgtttcagca
TTTTTCCAAATTGGGCTGAATGGGGGGAAATTTAGGAAAACAATATAAGA
TTTGTTTATTGGTCACATGAGATTATCTTTCCTATCTGCTGGGTACGCAg
caacaaaaatgtttttctcttcaaagtgaattttattgaggtctaaagat
ttttaagaaaaccattcctttctatgataaagaagaaagataaagtTAAA
TTTAGAACCTGGTAGTATGTCAGTAGTATACTGAAGAAGAGTTTTTCACT
CAACTGGTTCTCAAGAAAATTACCCTAAGCGAAATTAAGTATAGATGATA
TTTACACGTCTTACTCTGCCAACCATTCTTATATAACAATTTGAAATtag
attaaaaaaacaaaaaacaatggaaattaAACAAATACCAATCAACAATG
AAGATTTACAGAGGTTCAACAGTGACTGTTATACATTTAAAGAGCATCCC
TTGAGTATGTTGGAACCATACCATCAAGTCTTTCCATCACTTTATATGGA
TCACCACAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGA
TTTGCACTTTCCCAAAATCAGGAACCCGTTGGATGCAAGAAATTGTCTCT
TGTCTACGGAATGGAAtggattttgaaaaagtaaagaCCACCTCTTTGAA
CCTAAGAGTTCCATTCTTTGATGTATCTGCTGTATGCAGCACTGCAGAGA
AGGAACTCAAAGCATTGGGTTCCCTTTGTAAAACTGGAGCTGAACTTGTC
AACCATACACCTCGACCAAGGACTATAAAAACTCATCTCAGCTATGAAAT
GTTGCCTCCAAAGATTCATGAAAAAGGTGCCAAGATGATAAACGTCATAC
GAAACCCACGTGATGTTTGTGTATCATTTCTCAATCATCATGTTCTGACA
GAAAACTATACTGGTGATTTACAAACCATCGCAGAGATTATGTTACAGGA
TGTAGGACCTCTCTGTGCTCCTTTCTTTACACATATCCTGAGCTACTGGA
ACCAACGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAA
AAAGACATAGCTGGTGTTATCAAGCGAGTGGCCAAGTTTATAGGCACAGA
AGAATATTCAGATAACCAAATAGCAAAACTTATTGACCACACATCAGTGG
ATAAAATGAGAGTCAACCCTATGGTCAATGGGACAGGAGTTATAGATGTA
ATTACACTTTCTTCAATTAATTAATCATAGCCAAAAGTGGGCAATGCTCT
TGACTCAACATCAGATGCCTAAAATTGATTCTTTAAAGGGTTTCGTATTT
TCAAATGAAGTGTTTTCCACCACCCTTCATAGGAATAGGaactcccgggg
ggggtactagggcaagatgggttacggggatgctccgctggtcagggtac
cttttttaacctccacg
Run BLAST on NCBI

protein sequence of TCONS_00055513-protein

>TCONS_00055513-protein ID=TCONS_00055513-protein|Name=TCONS_00055513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MEIKQIPINNEDLQRFNSDCYTFKEHPLSMLEPYHQVFPSLYMDHHKSFQ
EAEVYEDDVWICTFPKSGTRWMQEIVSCLRNGMDFEKVKTTSLNLRVPFF
DVSAVCSTAEKELKALGSLCKTGAELVNHTPRPRTIKTHLSYEMLPPKIH
EKGAKMINVIRNPRDVCVSFLNHHVLTENYTGDLQTIAEIMLQDVGPLCA
PFFTHILSYWNQRENPNLLIVHYEEMQKDIAGVIKRVAKFIGTEEYSDNQ
IAKLIDHTSVDKMRVNPMVNGTGVIDVITLSSIN
Run BLAST on NCBI

transcript from alignment at scaffold_253:478700..485104-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055513 ID=TCONS_00055513|Name=TCONS_00055513|organism=Clytia hemisphaerica|type=transcript|length=6405bp|location=Sequence derived from alignment at scaffold_253:478700..485104- (Clytia hemisphaerica)
GGAAATGAGGTCATTTCATGGGTTAGAAGTGACGTTTGATTTGAATGTAA
CCAATGGCTTCATTTTGTTTCAGAGAGAAACGAAACCGTAGCGTGTGAAC
CTGGTCTTTAAGCAACCTAGAGACATTTCAATTCTTATGATTGGCAATCA
TTTGAACAATTTTGAAAATATCCATCATGAAGGTAAAATTTATTTTAGAC
TGCAATGGCAGCAATGAAGAATGAGCAAAAGGGAAGTTTTATCAACACTG
GGAAGACAGGAGGATGGAAAAACAAACTCACTGAAGAAACTATTGAGAGA
TTTAAAAAATGGGAAGGGAAATGGTTGAAGGACACTGGATTAATGTTTGC
TTATGAAGTTTGATTTTTTATTTAATATCATTTATTTAATTTTTTAGTTA
GCATTTTACAATTATTTTTTAAAAGATTGAAACTTTTTTTTGTTTCAGCA
TTTTTCCAAATTGGGCTGAATGGGGGGAAATTTAGGAAAACAATATAAGA
TTTGTTTATTGGTCACATGAGATTATCTTTCCTATCTGCTGGGTACGCAG
CAACAAAAATGTTTTTCTCTTCAAAGTGAATTTTATTGAGGTCTAAAGAT
TTTTAAGAAAACCATTCCTTTCTATGATAAAGAAGAAAGATAAAGTTAAA
TTTAGAACCTGGTAGTATGTCAGTAGTATACTGAAGAAGAGTTTTTCACT
CAACTGGTTCTCAAGAAAATTACCCTAAGCGAAATTAAGTATAGATGATA
TTTACACGTCTTACTCTGCCAACCATTCTTATATAACAATTTGAAATTAG
ATTAAAAAAACAAAAAACAATGGAAATTAAACAAATACCAATCAACAATG
AAGATTTACAGAGGTTCAACAGTGACTGTTATACATTTAAAGAGCATCCC
TTGAGTATGTTGGAACCATACCATCAAGTCTTTCCATCACTTTATATGGA
TCACCACAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGA
TTTGCACTTTCCCAAAATCAGGTTGAAATATTAACCAAGGAGATTACTTG
GTACTAATCTCTGAATTTGTAAAAGATAGATTAAGATTTTCTGTTCTTTA
ACAAAATCATCACATAATAATTCATACAATTCACCATTCACCATTATTAT
TGCTTGTTTCCCTTTTTATCAACAATTGTTATTTTTCGATTTTCTTTGAA
AGGCCTACCAGGCAGGCAAAGATTGTTAATAAAAGTTTTTCTATTTAATC
TCTATTTTTTATGTTCTAGGAACCCGTTGGATGCAAGAAATTGTCTCTTG
TCTACGGAATGGAATGGATTTTGAAAAAGTAAAGACCACCTCTTTGAACC
TAAGAGTTCCATTCTTTGAGTAAGTTTTTAAAGGAAAATGAGAAAAAATA
TTCAAGAAGTAATGAAATATTTCAAAATTAATCCTGCCAACTTTATATCA
TTTGTATTTACAATTTAGTGTATCTGCTGTATGCAGCACTGCAGAGAAGG
AACTCAAAGCATTGGGTTCCCTTTGTAAAACTGGAGCTGAACTTGTCAAC
CATACACCTCGACCAAGGACTATAAAAACTCATCTCAGCTATGAAATGTT
GCCTCCAAAGATTCATGAAAAAGGTGCCAAGGTATCAAAGTTTCTTTTCC
AAAACTTATGAATAGAATAGAACCTAGTCAGAAATGGACCTCACTGCTAT
TATTACTATAATTCTTCCTTGATATTTTCTAGATGATAAACGTCATACGA
AACCCACGTGATGTTTGTGTATCATTTCTCAATCATCATGTTCTGACAGA
AAACTATACTGGTGATTTACAAACCATCGCAGAGATTATGTTACAGGATG
TAGGACCTCTCTGTGCTCCTTTCTTTACACATATCCTGAGCTACTGGAAC
CAACGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAA
AGACATAGCTGGTAAGACAGCCTTTTTTATTTTTCACTTGCTTTATAACA
TATTTGAAAAAACCCATAGTATGTAGATAAAAGTATCTTAGTAATTTCAA
ATAAAAAAATTCATCTCTGTTTGTATACATGCTTATTCAACATGCATGTT
GTAGTCTCATTTTACATGGAAAATCACAGCTTAAAATTTCACAATCACAT
GCATGTAAAGATAAATTTCTATACCCCAAAATTACAAAAAAAAACATGCA
TGTAGTGCGGTATTACACCCCGAAAATGAAACTCATGAATGTAAAAGTGT
TTTTTTTAATGAATTTTGTGTATGATCATCAACTTTAAAGGAGAAATCAA
CATTTTTTTCATATTTTTGAAAAATACCTAAATCACATCATATTGTAGCC
TGAGAATCCAAGCTCATATTTTTAGAAAAAACAAAAAATACCTCACCTCA
CAAAGTTTTAAAATTATAGAGCTTGGTGCAGGTAGATTAGTCTGACACAG
AATGTTATAAACAGTCTGTGTGTGAACCCTTGTTGACAGACTTTCTGAAC
TTTGGAAACCCAGGCAAACACACATAATCAACTTACCATAAAAACTCTAG
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTAGCAAAAGATAT
AGCTCATTTTTGTTTACAGAAAATCTAATCTTTTTAAAACAACGCATTTT
ATGTTAGGGGAATAGGTTGAGCCATCTGTTTGATGTGAAAGTGTTTATAA
AGTATAATTGGAAAAGCTCTTGCTTTTAGTTGATAAAGAACTCTTAAACT
TTTTTAAACTTTTACAACTTAACTTTTTTAATGTGTAGCCAAAACTTTTT
ATATCCACATATGGGTTAGCCAAGAGAAGGATATCATTTAAGCCATTTTT
GAGTGGAGTAAAACTATGTTTGAACTTTTGAAAACAACCAAGTGAAAATA
ATTTCAGAGTCCATTGAAAAAATTGAATTTTTCATTGGAATAAGCAGAAA
ACCTCTTTTTTAGCGGCTAGTTCGAAACGCAGGTCACCTCATTTTGTGAT
AACGCCATTATTTCCATAATTTAGGTGTCACTTTGTCAATATTAGGGGTT
GATGATTTGTCCTTGAAATCTTAATAGCATATTTTGTTTGTATACAACAT
GTCCATTATGCATATAATATTTAAAAAAACATGTTATGAATGGCATGTTA
CGAGTGCAGTACAGTTTTCTGGACTGTAGTTTATATGACCTGTAACCTGT
GACCTGCGTTTCAAACTAGCCGCTTCTATAATCCATGTCAAACTGAATCT
TACCCGAAATGATTTTGCATTATTTCTCGTTTACAAATTATCAAGCTTTT
AAGTCGCACAAAATGCACAAAATTCATAAAAAGTATGAACCATATGATGT
CACAAACATGTGTAAAGTAAGGGTTCATTTTAAACAAATTATACGCTTTT
TGAAGAAGGTTTGATACAAAATAAGACAGAGGCTGAGAGTGGAAGTGATT
TTTTTTTCGGGGAGGGGGGTACTTGTTTTGAAAACAACTATAGGTTTGGC
CCAAAAATTTTTGAGACATACAGATGGGAAATATACACATGTTCAAGAGC
ACGAGTAGCACGATATTGAATAATTTAGTTTAATTTCCTTGCTTACGAAG
GAAGAATTCATTTCATTTGAAAATTTTCATATTTTCATAGGAATAAGGTA
ATTTGCTACCATTACAGTAAAGGTACAGCTAAAAACATACCCTTACAGTG
CAGCACTGGTCAAAACATACCCTTACGGTGCACTAGCGAATCTTGAAAAA
TTGACCCTTAAGTGCCGCACGTCTGGTAAATCATTTACCTTGAGTGCCCC
CCGGGTATTTTTTCGAAGTTCTACTATATTATCTTGTACTTTCTTATTAT
TCTTGTAATTTCAGAGAATATGAAAAAAATTAATTGCTGCACTTACAGCA
TCACTAATTATCAAACCTTTCTTTTTTCGTTTTCTTTTGGTTTTCTTATA
GGTGTTATCAAGCGAGTGGCCAAGTTTATAGGCACAGAAGAATATTCAGA
TAACCAAATAGCAAAACTTATTGACCACACATCAGTGGATAAAATGAGAG
TCAACCCTATGGTCAATGGGACAGGAGTTATAGATGTAATTACACTTTCT
TCAATTAATTAATCATAGCCAAAAGTGGGCAATGCTCTTGACTCAACATC
AGATGCCTAAAATTGATTCTTTAAAGGGTTTCGTATTTTCAAATGAAGTG
TTTTCCACCACCCTTCATAGGAATAGGAACTCCCGGGGGGGGTACTAGGG
CAAGATGGGTTACGGGGATGCTCCGCTGGTCAGGGTACCTTTTTTAACCT
CCACG

Coding sequence (CDS) from alignment at scaffold_253:478700..485104-

>TCONS_00055513 ID=TCONS_00055513|Name=TCONS_00055513|organism=Clytia hemisphaerica|type=CDS|length=4275bp|location=Sequence derived from alignment at scaffold_253:478700..485104- (Clytia hemisphaerica)
GTGTTATCAAGCGAGTGGCCAAGTTTATAGGCACAGAAGAATATTCAGAT
AACCAAATAGCAAAACTTATTGACCACACATCAGTGGATAAAATGAGAGT
CAACCCTATGGTCAATGGGACAGGAGTTATAGATGTAATTACACTTTCTT
CAATTAATTAAATGATAAACGTCATACGAAACCCACGTGATGTTTGTGTA
TCATTTCTCAATCATCATGTTCTGACAGAAAACTATACTGGTGATTTACA
AACCATCGCAGAGATTATGTTACAGGATGTAGGACCTCTCTGTGCTCCTT
TCTTTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTT
TTGATTGTTCACTATGAAGAGATGCAAAAAGACATAGCTGTGTATCTGCT
GTATGCAGCACTGCAGAGAAGGAACTCAAAGCATTGGGTTCCCTTTGTAA
AACTGGAGCTGAACTTGTCAACCATACACCTCGACCAAGGACTATAAAAA
CTCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGAAAAAGGTGCC
AAGGAACCCGTTGGATGCAAGAAATTGTCTCTTGTCTACGGAATGGAATG
GATTTTGAAAAAGTAAAGACCACCTCTTTGAACCTAAGAGTTCCATTCTT
TGAATGGAAATTAAACAAATACCAATCAACAATGAAGATTTACAGAGGTT
CAACAGTGACTGTTATACATTTAAAGAGCATCCCTTGAGTATGTTGGAAC
CATACCATCAAGTCTTTCCATCACTTTATATGGATCACCACAAATCATTT
CAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAA
ATCAGGTGTTATCAAGCGAGTGGCCAAGTTTATAGGCACAGAAGAATATT
CAGATAACCAAATAGCAAAACTTATTGACCACACATCAGTGGATAAAATG
AGAGTCAACCCTATGGTCAATGGGACAGGAGTTATAGATGTAATTACACT
TTCTTCAATTAATTAAATGATAAACGTCATACGAAACCCACGTGATGTTT
GTGTATCATTTCTCAATCATCATGTTCTGACAGAAAACTATACTGGTGAT
TTACAAACCATCGCAGAGATTATGTTACAGGATGTAGGACCTCTCTGTGC
TCCTTTCTTTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAA
ATCTTTTGATTGTTCACTATGAAGAGATGCAAAAAGACATAGCTGTGTAT
CTGCTGTATGCAGCACTGCAGAGAAGGAACTCAAAGCATTGGGTTCCCTT
TGTAAAACTGGAGCTGAACTTGTCAACCATACACCTCGACCAAGGACTAT
AAAAACTCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGAAAAAG
GTGCCAAGGAACCCGTTGGATGCAAGAAATTGTCTCTTGTCTACGGAATG
GAATGGATTTTGAAAAAGTAAAGACCACCTCTTTGAACCTAAGAGTTCCA
TTCTTTGAATGGAAATTAAACAAATACCAATCAACAATGAAGATTTACAG
AGGTTCAACAGTGACTGTTATACATTTAAAGAGCATCCCTTGAGTATGTT
GGAACCATACCATCAAGTCTTTCCATCACTTTATATGGATCACCACAAAT
CATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTC
CCAAAATCAGGTGTTATCAAGCGAGTGGCCAAGTTTATAGGCACAGAAGA
ATATTCAGATAACCAAATAGCAAAACTTATTGACCACACATCAGTGGATA
AAATGAGAGTCAACCCTATGGTCAATGGGACAGGAGTTATAGATGTAATT
ACACTTTCTTCAATTAATTAAATGATAAACGTCATACGAAACCCACGTGA
TGTTTGTGTATCATTTCTCAATCATCATGTTCTGACAGAAAACTATACTG
GTGATTTACAAACCATCGCAGAGATTATGTTACAGGATGTAGGACCTCTC
TGTGCTCCTTTCTTTACACATATCCTGAGCTACTGGAACCAACGAGAAAA
TCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAAGACATAGCTG
TGTATCTGCTGTATGCAGCACTGCAGAGAAGGAACTCAAAGCATTGGGTT
CCCTTTGTAAAACTGGAGCTGAACTTGTCAACCATACACCTCGACCAAGG
ACTATAAAAACTCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGA
AAAAGGTGCCAAGGAACCCGTTGGATGCAAGAAATTGTCTCTTGTCTACG
GAATGGAATGGATTTTGAAAAAGTAAAGACCACCTCTTTGAACCTAAGAG
TTCCATTCTTTGAATGGAAATTAAACAAATACCAATCAACAATGAAGATT
TACAGAGGTTCAACAGTGACTGTTATACATTTAAAGAGCATCCCTTGAGT
ATGTTGGAACCATACCATCAAGTCTTTCCATCACTTTATATGGATCACCA
CAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCA
CTTTCCCAAAATCAGGTGTTATCAAGCGAGTGGCCAAGTTTATAGGCACA
GAAGAATATTCAGATAACCAAATAGCAAAACTTATTGACCACACATCAGT
GGATAAAATGAGAGTCAACCCTATGGTCAATGGGACAGGAGTTATAGATG
TAATTACACTTTCTTCAATTAATTAAATGATAAACGTCATACGAAACCCA
CGTGATGTTTGTGTATCATTTCTCAATCATCATGTTCTGACAGAAAACTA
TACTGGTGATTTACAAACCATCGCAGAGATTATGTTACAGGATGTAGGAC
CTCTCTGTGCTCCTTTCTTTACACATATCCTGAGCTACTGGAACCAACGA
GAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAAGACAT
AGCTGTGTATCTGCTGTATGCAGCACTGCAGAGAAGGAACTCAAAGCATT
GGGTTCCCTTTGTAAAACTGGAGCTGAACTTGTCAACCATACACCTCGAC
CAAGGACTATAAAAACTCATCTCAGCTATGAAATGTTGCCTCCAAAGATT
CATGAAAAAGGTGCCAAGGAACCCGTTGGATGCAAGAAATTGTCTCTTGT
CTACGGAATGGAATGGATTTTGAAAAAGTAAAGACCACCTCTTTGAACCT
AAGAGTTCCATTCTTTGAATGGAAATTAAACAAATACCAATCAACAATGA
AGATTTACAGAGGTTCAACAGTGACTGTTATACATTTAAAGAGCATCCCT
TGAGTATGTTGGAACCATACCATCAAGTCTTTCCATCACTTTATATGGAT
CACCACAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGAT
TTGCACTTTCCCAAAATCAGGTGTTATCAAGCGAGTGGCCAAGTTTATAG
GCACAGAAGAATATTCAGATAACCAAATAGCAAAACTTATTGACCACACA
TCAGTGGATAAAATGAGAGTCAACCCTATGGTCAATGGGACAGGAGTTAT
AGATGTAATTACACTTTCTTCAATTAATTAAATGATAAACGTCATACGAA
ACCCACGTGATGTTTGTGTATCATTTCTCAATCATCATGTTCTGACAGAA
AACTATACTGGTGATTTACAAACCATCGCAGAGATTATGTTACAGGATGT
AGGACCTCTCTGTGCTCCTTTCTTTACACATATCCTGAGCTACTGGAACC
AACGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAA
GACATAGCTGTGTATCTGCTGTATGCAGCACTGCAGAGAAGGAACTCAAA
GCATTGGGTTCCCTTTGTAAAACTGGAGCTGAACTTGTCAACCATACACC
TCGACCAAGGACTATAAAAACTCATCTCAGCTATGAAATGTTGCCTCCAA
AGATTCATGAAAAAGGTGCCAAGGAACCCGTTGGATGCAAGAAATTGTCT
CTTGTCTACGGAATGGAATGGATTTTGAAAAAGTAAAGACCACCTCTTTG
AACCTAAGAGTTCCATTCTTTGAATGGAAATTAAACAAATACCAATCAAC
AATGAAGATTTACAGAGGTTCAACAGTGACTGTTATACATTTAAAGAGCA
TCCCTTGAGTATGTTGGAACCATACCATCAAGTCTTTCCATCACTTTATA
TGGATCACCACAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTT
TGGATTTGCACTTTCCCAAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034922XLOC_034922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055513-exon-scaffold_253-1575043694:484084..485104TCONS_00055513-exon-scaffold_253-1575043694:484084..485104Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1575043694:483736..483835TCONS_00055513-exon-scaffold_253-1575043694:483736..483835Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1575043694:483474..483636TCONS_00055513-exon-scaffold_253-1575043694:483474..483636Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1575043694:483144..483372TCONS_00055513-exon-scaffold_253-1575043694:483144..483372Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1575043694:478700..479053TCONS_00055513-exon-scaffold_253-1575043694:478700..479053Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1510915933:484084..485104TCONS_00055513-exon-scaffold_253-1510915933:484084..485104Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1510915933:483736..483835TCONS_00055513-exon-scaffold_253-1510915933:483736..483835Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1510915933:483474..483636TCONS_00055513-exon-scaffold_253-1510915933:483474..483636Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1510915933:483144..483372TCONS_00055513-exon-scaffold_253-1510915933:483144..483372Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1510915933:478700..479053TCONS_00055513-exon-scaffold_253-1510915933:478700..479053Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1491911889:484084..485104TCONS_00055513-exon-scaffold_253-1491911889:484084..485104Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1491911889:483736..483835TCONS_00055513-exon-scaffold_253-1491911889:483736..483835Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1491911889:483474..483636TCONS_00055513-exon-scaffold_253-1491911889:483474..483636Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1491911889:483144..483372TCONS_00055513-exon-scaffold_253-1491911889:483144..483372Clytia hemisphaericaexon
TCONS_00055513-exon-scaffold_253-1491911889:478700..479053TCONS_00055513-exon-scaffold_253-1491911889:478700..479053Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055513-proteinTCONS_00055513-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:478700..485104 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.0147	26.7262	16.0835	15.8477	20.184	14.939	31.7648	30.4784	21.7293	21.5978	12.9915	12.6547	9.69734	9.04992	12.8117	16.7682	21.4388	20.3879	3.21955	6.28466	11.4314	11.8047	18.9464	17.9823	12.3694	15.2565	24.3734	18.5262	17.6211	17.2921
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000863Sulfotransferase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008146 sulfotransferase activity
Blast
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BLAST of TCONS_00055513 vs. Swiss-Prot (Human)
Match: ST1C4 (Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.236e-32
Identity = 78/231 (33.77%), Postives = 124/231 (53.68%), Query Frame = 1 
Query:  988 DDVWICTFPKSGTRWMQEIVSCLRNGMDFEKVKTTSLNLRVPFFDVSAVCSTAEKELKALGSLCKTGAELVNHTPRPRTIKTHLSYEMLPPKIHEKGAKMINVIRNPRDVCVSFLNHHVLTENY--TGDLQTIAEIMLQDVGPLC-APFFTHILSYWNQRENPNLLIVHYEEMQKDIAGVIKRVAKFIGTEEYSDNQIAKLIDHTSVDKMRVNPMVNGTGVIDVITLSSIN 1671
            DD+ I T+PK+GT W QEIV  ++N  D EK K    + R PF          E ++ +LGS    G E  +  P PR +KTHL + +LPP + EK  K+I V RNP+D  VS+ +   + +     G  +   E  L   G +C   +  H+  +W  ++   +L + YE+M+K+    I+++A+FIG ++  D  + K++ +TS D M+ NPM N + +   I   SI+
Sbjct:   46 DDLLISTYPKAGTTWTQEIVELIQNEGDVEKSKRAPTHQRFPFL---------EMKIPSLGS----GLEQAHAMPSPRILKTHLPFHLLPPSLLEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFETFL--AGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIG-KKLDDKVLDKIVHYTSFDVMKQNPMANYSSIPAEIMDHSIS 260
The following BLAST results are available for this feature:
BLAST of TCONS_00055513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST1C41.236e-3233.77Sulfotransferase 1C4 OS=Homo sapiens GN=SULT1C4 PE... [more]
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