TCONS_00055421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055421
Unique NameTCONS_00055421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055421 ID=TCONS_00055421|Name=TCONS_00055421|organism=Clytia hemisphaerica|type=transcript|length=2753bp
aaacaacaagacatttgattggcttagacCGCAACAAAAGACGCCTCTGA
TTGGTCGAGAAATTAATTTGAATAAGTTGTAAAACAATAGTATTTGTTTT
CGATTGTGTCTGTAATGTCTGAACAAAGGAGATTGAAATTAAAGGTCTTC
TTGATAGAGTATCAATTCTAAGTAGTCGATTTAGTAGTCTCAGCTTTGAT
TATAGTATGCGGCTAAGACGATTTCtagtttttggaaaaaacttgaactg
aaaaatgagtgttttttttttttaacataagAGGACTGGATCACTTGATT
TGACAGTTGATGTTTCACCTATGAggaaaatttgatttattttttaaatt
ttgttcgtCAATTTTTatagtgtttcttataaaaagaaaaaaagtcgaga
TTTGACGCTTACCAAAACAGAAGATTGGTATAAACTCGAACACAGATAAT
ATTGTGGTACCCCTTTTTGCCCCTTTTTAAACGCGATAACGGAACAACGA
GCAAAACAAAATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCA
AGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACATTTTGGATAAT
TTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCTC
TTGCAACGAAGATGAAGACGTGAACGTTGATTGGTTAACCAGCTTCTTTG
ATGAACCAACGCACGATAGCCTGTCCGGATTAAACCCACCATTAAGTGAT
ATCTCGGACAGCGGAACCACTTTTTCACGAATCACATCTATAAATTGTAC
ATCTGATATTTTACTCGATTCTTACCCAACTTTCTCTGAAGATTATGAAG
CTACCATGCCAACATCCGAAACGACAAATAGCACAGAACTTATTAAACTT
TCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAATAACCCATTCTTATC
ACAAACACATTGTAATAATAGTAAAGACATTGTTTTAGGCTCGTTGAAGA
GTCATCCAGAACTGATGAAAGTGAAAACAGAGGAGCCTTCTAGCATAGAG
GAACTACCTACTAAAGAAACAACTTCTCCAACACCAACAACCTTTCTATC
GAATTCTACAGACACCAAACCacaacaaaaacttttactctTCATGAACA
CCCCTGAAAATCGGGCCAAATTAGCGGGAACAAATTTTAATATCATAAAC
GCGAACTTATTAAGTAAAATatctggaaatcaaaatcaagacTCTTCTGG
CAATAATATTAATTTGAGTACTAGTAATACGAGCAAACAAACAATGAATC
TAATTAATTTGAAGAAATGTATTAGGTTAAATAACACAGTACGTAGCAAA
GAGGACTCTTTAATTAAACCGACGTCAGATGATACGGTGACGGCTTCCAC
TGTTAATGCAACGCTGCAATCCATAATGGCTGCCAATCATCAAAGagaga
agaaaattttaccagTAGATATTTTGAACGGACACACGTATGGCTTGACG
CGCAAGGATAGTCATGATATTGACTCAGGTTACGAGTCACCGACATCCTC
ATCTGGATCTTCACCCTGTTCTCCACCAATCGAGTTATCGGATCATCATC
GCAAAGATGTCTGCTTATCCAATGAAAATATTCAATACATCGATATTCCT
CCACATGAACGCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACT
CATCATGGAAGGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTG
AAGAACGCGCCTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCC
GCTCAAGAAAGCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAA
AAAAGTTGACTGTTATGCATCTGAAAACTCAATACTCAAGAAGAAAGTGG
GAAGTTTAGAAGTTGCCAATCGTTCATTGATCATGCAAGTACAGAAGCTT
CAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAGTTGCAAATCGTTCAT
TGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTCT
CCACCTTCTCCTTCCAATGACAAGCAACATGAAATCATTGacGTTGAACA
ATGAACTAGTCGAAATCAAAATGGAGACAACTTAATCAATCTTTCGGAGA
AGCAGGCCacttttatgacttttttataGATAGATAGGGGTTTAAAAAca
caatcaaacaaaatttgtaaataataacTTTTAATACAGCTGTATCAATA
TTTTCGTGTACAGTGATAGCCCCTTAACCCCCTGAATAACCAATATCCCA
AATAATTTTGTAAGTAgagaatttcaacatttttttagaaaattgctgAC
TCAGCATATTGTTATATCATAGACGCTTTGGTGACGAATTCGTTGTTGTT
TAGGGTACTAATCCCAAAATGACTTTCAATAAACgtcaaataaaatatta
tttttggaccatttgaaatattttaaatatgCAACCCCAAATAATTATTA
TATTGTATTAACACAATTTAACTTATAGGTTTTCTTACCCAACAAATTTT
ATCAGTAACTTAGCTAGCTTTTTATTTATTACCATTTTTTCCTCCCTGCT
AATTTGTAGTAAaacgaaattcaattttttgaaaaaaattcaaatgaatA
TATAACATGAATCGACATCTTACTTCGCGTGAAcaataattataataata
atgatgatgCCCATTTCTTGTTACCTCATTGGAACCAATATTTTTTATGC
AGG
Run BLAST on NCBI

protein sequence of TCONS_00055421-protein

>TCONS_00055421-protein ID=TCONS_00055421-protein|Name=TCONS_00055421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MIMETMDVDLSVVKKERMDLDGEYGNILDNFTTENEYESFPNTNSISCNE
DEDVNVDWLTSFFDEPTHDSLSGLNPPLSDISDSGTTFSRITSINCTSDI
LLDSYPTFSEDYEATMPTSETTNSTELIKLSPKISPAVCSSNNPFLSQTH
CNNSKDIVLGSLKSHPELMKVKTEEPSSIEELPTKETTSPTPTTFLSNST
DTKPQQKLLLFMNTPENRAKLAGTNFNIINANLLSKISGNQNQDSSGNNI
NLSTSNTSKQTMNLINLKKCIRLNNTVRSKEDSLIKPTSDDTVTASTVNA
TLQSIMAANHQREKKILPVDILNGHTYGLTRKDSHDIDSGYESPTSSSGS
SPCSPPIELSDHHRKDVCLSNENIQYIDIPPHERQPFYLSEEEKRTLIME
GLPVPQGLPLNKSEERALKKVRRKIKNKISAQESRRKKKEYMESLEKKVD
CYASENSILKKKVGSLEVANRSLIMQVQKLQALVTAKIXFRSCKSFIDHA
STEASSPCHSKDFSTFSFQ
Run BLAST on NCBI

transcript from alignment at scaffold_253:710253..719063+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055421 ID=TCONS_00055421|Name=TCONS_00055421|organism=Clytia hemisphaerica|type=transcript|length=8811bp|location=Sequence derived from alignment at scaffold_253:710253..719063+ (Clytia hemisphaerica)
aaacaacaagacatttgattggcttagacCGCAACAAAAGACGCCTCTGA
TTGGTCGAGAAATTAATTTGAATAAGTTGTAAAACAATAGTATTTGTTTT
CGATTGTGTCTGTAATGTCTGAACAAAGGAGATTGAAATTAAAGGTCTTC
TTGATAGAGTATCAATTCTAAGTAGTCGATTTAGTAGTCTCAGCTTTGAT
TATAGTATGCGGCTAAGACGATTTCtagtttttggaaaaaacttgaactg
aaaaatgagtgttttttttttttaacataagAGGACTGGATCACTTGATT
TGACAGTTGATGTTTCACCTATGAggaaaatttgatttattttttaaatt
ttgttcgtCAATTTTTatagtgtttcttataaaaagaaaaaaagtcgaga
TTTGACGCTTACCAAAACAGAAGATTGGTATAAACTCGAACACAGATAAT
ATTGTGGTACCCCTTTTTGCCCCTTTTTAAACGCGATAACGGAACAACGA
GCAAAACAAAATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCA
AGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACATTTTGGATAAT
TTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCGt
aagtttcttgtttttatgCTACATTCTATCTCGTTTTACTTTCAGTTTTA
TTTGTCTCGCTATGCCCCTTGCTATGacttgaaaatatgttttttctttc
atttttgattttgctttttataagaaactcgGAATTTCAATAGTctgtaa
aaatgacaaaatctaGATAAGGCGGACTATTTAGGATTAGAAGGGAGGAA
AATTTCATGAATGAATTCatagaaatgtttattttttgctGTTTGTTATT
CATCATTACTTTTAGAACAAATTCGCTAATCCCAGGGATAGATATTTGAC
TATTTCCGGGAGGGGGCTTGACAATAGATCGATTGTATTTGTGAATgatg
acagtgatgatgatATTATTTGGAACCATAGCATCGAACAAAAATTGTAT
TCATTCTTTTAAAACGTTATACCCTCTGTTTGTTTACTTTCAATAATGAC
ATCAAACAAGATTTTCTCTAAAAAATATGTCAGCGTAGTACAACTTAACG
CTAACGGAGAAATAAGAGTCCTTGTTTTTCTTGTGGGTAATTCATAAAGT
TCAAAAGACTTGCCGTTTAAgttgttttgtttatgttttgccCGTGCTAG
TGAAAcaccaacaaatttttttgtgaaGAGCACTTCTCTCAAACTGTCGT
CTTTCGGTACGACTCTTatcttttttgtgaaagaagaAAACAATTCGGTA
TTTTTGCGTGCCTTGTAAATCAGCCAAGCgtttttttctgagaaaaagtt
tttctttttcttgtctCTTTATATTCtgataaaaaatatgttttttgttg
aaaaattgcaaCTTTGAATACCGAATCTGttgcttttttctaattttcat
catacatcgagaacaaaacaaaacaactcCCGTCTTTTTTTCAATCGGAA
GTGATTCTCGATCACTTTTTGTACTAGTTTCATTCAATCGAGATAAAAAT
CAATCAAGCCGGATAAATTAGTCTCGAGTAATTAAGCCAAAATAACTACT
CAAAGGAAAACCCATTTAATTTTTCTCTTATATAAATCCGACGATTAGTA
AAGACGTAAGACCTTAACCATCcgtagaaggaaaaaaaatgcgTCATTGC
CGTACTAAATGAGTCTTTTTGGGGTCCTGTTTGTAAACTTTGATAAAATT
AACGGCAGCCACCGCctgtaaagattttaaaaatgtcaaggAATTTTAAT
TCAGCggattttttggggaaaattcaaaaatttaaagtgTAGAGATCTTC
GTTTTCATAAATTGCGCCGAAATTAAGGCCAGAGAGTGTTCATTGACATT
GAAAAAACCATTTGGGTCTTTCGCAATTATTCATAACCCCTTCACGTGAT
AAAGTTTAAAGGAAATTTTCACTTCGAAACTCATGCGAGTGTTGCGGTCT
AATAGAGCGGTTACAGCGAAACTTCACGAAATAACCGTCATGCAAAGCTT
TATAACCTTATCGTGTTCTTAAACTACACTTGCATTGAAAGAAAAAGCTC
GAGATCATGTTTCCTTATCTTCAAGTCAAGGGGAGTTGAGGCTGTCTGAA
ATCTACAGGCACGGAAATGAACCATAGTTTAAGTTAGGCATATTCGATGT
CGATTTTCAactatcaaaacatatcaaaaagccGTATGTGTGCGTAAAGT
ATACTGTGTTTTGATATGTACCCCTCCTAGAGTGGCAATGACAAACTGAA
GGGAGTTTAATAACAAACTTTTGGATATAATACAAAAAGATGATAATAGG
GGAATCGTTTTCAAGAGGTGCGAGATCAATAGTCAAAACTCGGCCTTCCT
GTAAAATAGCTGTGCAAAGGGCTAAGCTAGGGCATTAAATTGCGGCCTTA
TTTACTAGCATTTCCTTTTGTTGACTGTGAGAGTGTCCCTGAAAGATTTG
acaggaaaaaataataacttttctTGTCATAAAATCACGTAATAGAAACC
CCCTTAAATTGTAACATTTTTGAGGAGTGATACTGTTTTAATAACTTGGT
TTATTAAGCTTTTCACCTTTTTATGATAAAGTCGCCAATGAGTTATAAGA
ATAAAAGATACCACCTTCATAAAAAAAGGCAATGCCTGACAGAGGACTTT
GTTTCGAACTGTCAAATCCACAGCTTGATTGGTTAACAGGATTTCATTCA
TGAATAGTCTTGCTGTAATTACTCCGACGTtgtaaattttcattaaaaat
tgctttttaatttcAACCAATCTTGTCAGAAGAGGaaatactttttttac
tttactTGACTTTTTTGATAACAGGCCAATAGGAAGTAAATTAAAATACA
ATGATTTGCGGGAAAATAATGTTTGCCTCCTTAATTGGTAAAATAACCTT
GTATCAAGGAAGTTTTTAAATCACTGCATATTTCAGCATATTTTAACAAA
TTCACTATTTAAAATGCATTTAAgaataaaaggaaaataaaattgaagtc
ccgaaaaacttttaaaagtgaCATAAAATGACgagaacagaaaaaaaaat
tagctttCTTAATTTTCCTGAAACTTAGAAATCAAtccttttttaaatgt
tttgtcgGAGTTTGATATTTCCTGGAGTAAATGATTAGCATTTCTTTTCA
CGTCTAAATAAGCATCGTCAAGAGGGAAGTAGGCGGGACTATGTTGCGTT
CAAAGTTTGGCACATGACATCAAGGTGTGTGTCCGTGACTCTTTCCATGT
CCTCCGTTTCTATGCGACATTTAACCTTGGTAATGCTGTACATTCATTGC
TGTACTTAGTGCTCGGGTTTTATTGCTAATTTAAATGATCTAAACGTCTG
TACTCACAAAAGCAAAGAGACTTTTTTGCAgcatttattcattttttcct
tttctcaTTTTAGTCTTGCAACGAAGATGAAGACGTGAACGTTGATTGGT
TAACCAGCTTCTTTGATGAACCAACGCACGATAGCCTGTCCGGATTAAAC
CCACCATTAAGTGATATCTCGGACAGCGGAACCACTTTTTCACGAATCAC
ATCTATAAATTGTACATCTGATATTTTACTCGATTCTTACCCAACTTTCT
CTGAAGATTATGAAGCTACCATGCCAACATCCGAAACGACAAATAGCACA
GAACTTATTAAACTTTCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAA
TAACCCATTCTTATCACAAACACATTGTAATAATAGTAAAGACATTGTTT
TAGGCTCGTTGAAGAGTCATCCAGAACTGATGAAAGTGAAAACAGAGGAG
CCTTCTAGCATAGAGGAACTACCTACTAAAGAAACAACTTCTCCAACACC
AACAACCTTTCTATCGAATTCTACAGACACCAAACCacaacaaaaacttt
tactctTCATGAACACCCCTGAAAATCGGGCCAAATTAGCGGGAACAAAT
TTTAATATCATAAACGCGAACTTATTAAGTAAAATatctggaaatcaaaa
tcaagacTCTTCTGGCAATAATATTAATTTGAGTACTAGTAATACGAGCA
AACAAACAATGAATCTAATTAATTTGAAGAAATGTATTAGGTTAAATAAC
ACAGTACGTAGCAAAGAGGACTCTTTAATTAAACCGACGTCAGATGATAC
GGTGACGGCTTCCACTGTTAATGCAACGCTGCAATCCATAATGGCTGCCA
ATCATCAAAGagagaagaaaattttaccagTAGATATTTTGAACGGACAC
ACGTATGGCTTGACGCGCAAGGATAGTCATGATATTGACTCAGGTAAGAT
TTCAATTCGACTGACTTCGGTACTTTTCTGCTATCCGGATCATTTCGCCT
GAATTTCCGTCGCTCAGACAAATAGTCTTATATATTGTCAAATTGTTTGC
aagcaatttttcaaattattttggttttttaAGAATGACGGGCGACATAA
TAACACTCTGAAACACGACCACACGGAGCTTCGATTTCTCGTTTATATTG
GTGGTCTCTAAAGTATTTTTATCTGACGAAGCCGCAACCAAATTTAgagt
tttatagaaaaactctCGAAATGGGTTTTCTAAATAGAGTACATAGGCAC
TATAAGCAAATGTGCCTGGAAAATCTTTAATGTCTTTAATAGATTCTTAT
ACTACTTTCCAAATGGTAGCTCCTTTTCATAGATACGGAAGCAAATACta
tgttttcaaatatttctgaaATTGAGGGTTTCCTctgaattttatttgaa
atttcagtTTTCAACTGTTTGTGAAGTCGAATATTTCTCTTAAATTTCGT
TATATGTGCTTAGCTGCTTTTATAACCTATACGATAATATTGACCTTCAT
ATTATTTCTCAAAGCATTCTTAATCTATATTTGAAGTTTGATCAactgta
ttttaagaaaattaataGAAAAATGAAGAGGAGAATAAAAATCGGAGGTT
GTCGGagctaaataaaaaaacaatgaaattcccACTCGTTTTCTAACGAT
TTTTGAAACTCGTGTGTGAAAATTTCGTTATTAGGCAACCATTTCATAAA
TTTAGAATTTCGTTACAATAGGAAAGGTGCAAATATCTTTTTCTTCTCTA
AAGAAATTGCTCTTCGTTTCAACGATTTGAAGTTTCGTAGCAACATCGAC
TTTTTCATATCACACTTTTCTGTCATATGTAATTTCTCGTGTAACCGAAA
ATTTTCAGCTTCGTTTTCGTTAGCCtcttttacttaaaattcgaaaagtt
aacTAAAAAAGAACCAAGTCTTCATTCCTCTTCAAACTAAATCCAGATCC
Agtgtcaaaacacttgaaaggcttctatttttcgaaaatcgtcaaagtgg
aactcactaagaaacgaaaCGGGGTGAAAAATcctggtttttggtgaggt
actcGCTATGGTTTCCCCTGCTTTTGCCAAACTCCCGAAAGGCCTTCCTT
CCGAACCTCTCAAACATAGAGGCATATCTGCTATTAAAACTAACTATAAG
AACTCTAGACTAATGATAGTTTGTCAAGCCTACTGCATTGCAAATTTTGA
CTAACTTGCCCATTCACATTTACGAAGATTTGAACTGTAGCGGTTATGAA
TAGCTTCAGGTCCTGTAGAGGTGTGGATGCATCACTTTTTATGTTGCTCA
ACTTGACAAAAAAGTGATACAACATTAATTGTCCAATCACTGTTCTTCTT
TATCACACAGGTTACGAGTCACCGACATCCTCATCTGGATCTTCACCCTG
TTCTCCACCAATCGAGTTATCGGATCATCATCGCAAAGATGTCTGCTTAT
CCAATGAAAATATTCAATACATCGATATTGTGAGTAACCAAACCCTTTTT
GTTGTAGAAGCAAAATAGTTACCTCTCCCCGAGCTCCAAATGAAGCCATA
CATCTCGTTTGAGATTGAAACTGTATATGGTGTATGGACACTGGTAGCAT
AGAAGGGTTTTAAATAGATTACTGCTTCTTACCCTTGTTGAATATGAATT
GAATGGTTAGAGTTACAATACCCTTGAATCGATCATTTCTGCCTGTTGCA
AACGTTAAGgttcaatttctttctttttttccaaacaGCCTCCACATGAA
CGCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACTCATCATGGA
AGGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTGAAGAACGCG
CCTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCCGCTCAAGAA
AGCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAAAAAGTGAGT
ACTATTTTCATCCTAAGCAATATTTTACGCCGGCCTTTATTCAACGACAG
CCAAACAAAATCTCCAATAAGGGCTGGTGTAAAGAGGGCCGACAAGTAGC
TGAATTATCATTAATCAGCCTTCGTATAGGTGAATTTGTAAAGGGAAAGG
CCAGGGATTAGAAGGGGAAGAAATTTTACAGGAAAAGGTTAGATGACGTT
CCTAAGCAGCTAAAAACTAACCCCGAAAAATTCGAAAGAAtgtaaaaagg
aaagaaaactaTCATCAGTACAATGACTCACGTTTTCTATTTCTTTCATc
ggaaaaattctctttttaatCCTTATGGATgacaggaatttttttaaaac
tagaCGTCTTTGTGTGCAGCCTTACAACGGAAACATTGTAAAACTCTTTG
TTGATCCTATATTTGATACACCTAGCAGTCTACTACAATGCATTCTTAAT
AGCAGTTATTTAACTACAGAGGTATTCCACTTCCATAACCCATTAGACCT
CATTATAGACAATACAATCAATGTAATTATACTTTGTTTTTTGTGTTCAT
TTTCCGCGACGCGACGGGGAATTACGAGAGCTCTTTTTCCTTTTCCGATA
TCGAANCATTTTCAGCGACGCGACGGGGAATTACGAGAGCTCTTTTTCCT
TTTCCGATATCGAATTTGTATGATAATTTTGCATCAAATCAGCctgtttt
tttctcaataatgATCGACCTTGTCTATTCCACCTACTGTAATGTGAGGG
AAATTGTTATATACAGCCCTGTGTACAGTACACCGGTTCAAGTAATAAAG
GGCGTAAAAATCTCGATCAAGATCCATTATTTTCAACTCGAGCATTTTCC
GagcctttctttttcttcaaaccGTTGTACCTGACATCTaatctttattt
gcttttaATTTCCTTCAGAGTTGACTGTTATGCATCTGAAAACTCAATAC
TCAAGAAGAAAGTGGGAAGTTTAGAAGTTGCCAATCGTTCATTGATCATG
CAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAG
TTGCAAATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTC
ACAGCAAAGATTTCTCCACCTTCTCCTTCCAATGACAAGCAACATGAAAT
CATTGGTAAGTCCTTAACAATTGTATTTCCGAAAAAACTAAAACGTGGCT
CCTCGTCcctgtgtatcccaggctttatttacattaCTAATGAACGCTAG
TATAATCTGGCGCTATCAGTGAGCATCAAAAGGCCGATGATatgcaggga
acgaggttgtgtTGTGAGTGTGAGTTGACCTTGAAGTTCTTAAACGTCCT
TCCTTTATGGAATGTTTTCTTTATCATCTAAGGATATCTGATAAGCTAGA
GATTATTGATGTCTACATAATGACATTTCTTTAAAACTCTCCAATAATCT
TTTAGAATTAccttgatttgaattttttttcggcatATTTCGGAGAATTC
CTCTACAAATGACAGAGGGAGAAGAGGGTGACCAGTATATAACAAACTTG
AGCAATTCTTTGCAAAGGTGCAATATCTGTGTTGGGAGTCCACTGGGAAA
TTAATTCGTCTGATTTATTTAATCATTTGCTGGGATAATTATGACTTCAG
ATGATTGATCAATATGATCAAAATGTGGGTTTTCTCTGATACTTCTACAA
GACAAATGGTATATTTTTTAACCATTCtttattatttctttattttagac
GTTGAACAATGAACTAGTCGAAATCAAAATGGAGACAACTTAATCAATCT
TTCGGAGAAGCAGGCCacttttatgacttttttataGATAGATAGGGGTT
TAAAAAcacaatcaaacaaaatttgtaaataataacTTTTAATACAGCTG
TATCAATATTTTCGTGTACAGTGATAGCCCCTTAACCCCCTGAATAACCA
ATATCCCAAATAATTTTGTAAGTAgagaatttcaacatttttttagaaaa
ttgctgACTCAGCATATTGTTATATCATAGACGCTTTGGTGACGAATTCG
TTGTTGTTTAGGGTACTAATCCCAAAATGACTTTCAATAAACgtcaaata
aaatattatttttggaccatttgaaatattttaaatatgCAACCCCAAAT
AATTATTATATTGTATTAACACAATTTAACTTATAGGTTTTCTTACCCAA
CAAATTTTATCAGTAACTTAGCTAGCTTTTTATTTATTACCATTTTTTCC
TCCCTGCTAATTTGTAGTAAaacgaaattcaattttttgaaaaaaattca
aatgaatATATAACATGAATCGACATCTTACTTCGCGTGAAcaataatta
taataataatgatgatgCCCATTTCTTGTTACCTCATTGGAACCAATATT
TTTTATGCAGG

Coding sequence (CDS) from alignment at scaffold_253:710253..719063+

>TCONS_00055421 ID=TCONS_00055421|Name=TCONS_00055421|organism=Clytia hemisphaerica|type=CDS|length=7800bp|location=Sequence derived from alignment at scaffold_253:710253..719063+ (Clytia hemisphaerica)
ATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCAAGAAAGAACG
AATGGATTTGGACGGAGAATATGGAAACATTTTGGATAATTTCACAACGG
AAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCTCTTGCAACGAA
GATGAAGACGTGAACGTTGATTGGTTAACCAGCTTCTTTGATGAACCAAC
GCACGATAGCCTGTCCGGATTAAACCCACCATTAAGTGATATCTCGGACA
GCGGAACCACTTTTTCACGAATCACATCTATAAATTGTACATCTGATATT
TTACTCGATTCTTACCCAACTTTCTCTGAAGATTATGAAGCTACCATGCC
AACATCCGAAACGACAAATAGCACAGAACTTATTAAACTTTCACCCAAAA
TTTCGCCGGCAGTATGCAGTAGTAATAACCCATTCTTATCACAAACACAT
TGTAATAATAGTAAAGACATTGTTTTAGGCTCGTTGAAGAGTCATCCAGA
ACTGATGAAAGTGAAAACAGAGGAGCCTTCTAGCATAGAGGAACTACCTA
CTAAAGAAACAACTTCTCCAACACCAACAACCTTTCTATCGAATTCTACA
GACACCAAACCacaacaaaaacttttactctTCATGAACACCCCTGAAAA
TCGGGCCAAATTAGCGGGAACAAATTTTAATATCATAAACGCGAACTTAT
TAAGTAAAATatctggaaatcaaaatcaagacTCTTCTGGCAATAATATT
AATTTGAGTACTAGTAATACGAGCAAACAAACAATGAATCTAATTAATTT
GAAGAAATGTATTAGGTTAAATAACACAGTACGTAGCAAAGAGGACTCTT
TAATTAAACCGACGTCAGATGATACGGTGACGGCTTCCACTGTTAATGCA
ACGCTGCAATCCATAATGGCTGCCAATCATCAAAGagagaagaaaatttt
accagTAGATATTTTGAACGGACACACGTATGGCTTGACGCGCAAGGATA
GTCATGATATTGACTCAGGTTACGAGTCACCGACATCCTCATCTGGATCT
TCACCCTGTTCTCCACCAATCGAGTTATCGGATCATCATCGCAAAGATGT
CTGCTTATCCAATGAAAATATTCAATACATCGATATTCCTCCACATGAAC
GCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACTCATCATGGAA
GGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTGAAGAACGCGC
CTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCCGCTCAAGAAA
GCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAAAAAAGTTGAC
TGTTATGCATCTGAAAACTCAATACTCAAGAAGAAAGTGGGAAGTTTAGA
AGTTGCCAATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTG
TCACAGCAAAGATTTNGTTTAGAAGTTGCAAATCGTTCATTGATCATGCA
AGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTCTCCACCTTCTC
CTTCCAATGAATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCA
AGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACATTTTGGATAAT
TTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCTC
TTGCAACGAAGATGAAGACGTGAACGTTGATTGGTTAACCAGCTTCTTTG
ATGAACCAACGCACGATAGCCTGTCCGGATTAAACCCACCATTAAGTGAT
ATCTCGGACAGCGGAACCACTTTTTCACGAATCACATCTATAAATTGTAC
ATCTGATATTTTACTCGATTCTTACCCAACTTTCTCTGAAGATTATGAAG
CTACCATGCCAACATCCGAAACGACAAATAGCACAGAACTTATTAAACTT
TCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAATAACCCATTCTTATC
ACAAACACATTGTAATAATAGTAAAGACATTGTTTTAGGCTCGTTGAAGA
GTCATCCAGAACTGATGAAAGTGAAAACAGAGGAGCCTTCTAGCATAGAG
GAACTACCTACTAAAGAAACAACTTCTCCAACACCAACAACCTTTCTATC
GAATTCTACAGACACCAAACCacaacaaaaacttttactctTCATGAACA
CCCCTGAAAATCGGGCCAAATTAGCGGGAACAAATTTTAATATCATAAAC
GCGAACTTATTAAGTAAAATatctggaaatcaaaatcaagacTCTTCTGG
CAATAATATTAATTTGAGTACTAGTAATACGAGCAAACAAACAATGAATC
TAATTAATTTGAAGAAATGTATTAGGTTAAATAACACAGTACGTAGCAAA
GAGGACTCTTTAATTAAACCGACGTCAGATGATACGGTGACGGCTTCCAC
TGTTAATGCAACGCTGCAATCCATAATGGCTGCCAATCATCAAAGagaga
agaaaattttaccagTAGATATTTTGAACGGACACACGTATGGCTTGACG
CGCAAGGATAGTCATGATATTGACTCAGGTTACGAGTCACCGACATCCTC
ATCTGGATCTTCACCCTGTTCTCCACCAATCGAGTTATCGGATCATCATC
GCAAAGATGTCTGCTTATCCAATGAAAATATTCAATACATCGATATTCCT
CCACATGAACGCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACT
CATCATGGAAGGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTG
AAGAACGCGCCTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCC
GCTCAAGAAAGCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAA
AAAAGTTGACTGTTATGCATCTGAAAACTCAATACTCAAGAAGAAAGTGG
GAAGTTTAGAAGTTGCCAATCGTTCATTGATCATGCAAGTACAGAAGCTT
CAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAGTTGCAAATCGTTCAT
TGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTCT
CCACCTTCTCCTTCCAATGAATGATTATGGAGACAATGGATGTTGACCTA
TCAGTTGTCAAGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACAT
TTTGGATAATTTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTA
ACTCTATCTCTTGCAACGAAGATGAAGACGTGAACGTTGATTGGTTAACC
AGCTTCTTTGATGAACCAACGCACGATAGCCTGTCCGGATTAAACCCACC
ATTAAGTGATATCTCGGACAGCGGAACCACTTTTTCACGAATCACATCTA
TAAATTGTACATCTGATATTTTACTCGATTCTTACCCAACTTTCTCTGAA
GATTATGAAGCTACCATGCCAACATCCGAAACGACAAATAGCACAGAACT
TATTAAACTTTCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAATAACC
CATTCTTATCACAAACACATTGTAATAATAGTAAAGACATTGTTTTAGGC
TCGTTGAAGAGTCATCCAGAACTGATGAAAGTGAAAACAGAGGAGCCTTC
TAGCATAGAGGAACTACCTACTAAAGAAACAACTTCTCCAACACCAACAA
CCTTTCTATCGAATTCTACAGACACCAAACCacaacaaaaacttttactc
tTCATGAACACCCCTGAAAATCGGGCCAAATTAGCGGGAACAAATTTTAA
TATCATAAACGCGAACTTATTAAGTAAAATatctggaaatcaaaatcaag
acTCTTCTGGCAATAATATTAATTTGAGTACTAGTAATACGAGCAAACAA
ACAATGAATCTAATTAATTTGAAGAAATGTATTAGGTTAAATAACACAGT
ACGTAGCAAAGAGGACTCTTTAATTAAACCGACGTCAGATGATACGGTGA
CGGCTTCCACTGTTAATGCAACGCTGCAATCCATAATGGCTGCCAATCAT
CAAAGagagaagaaaattttaccagTAGATATTTTGAACGGACACACGTA
TGGCTTGACGCGCAAGGATAGTCATGATATTGACTCAGGTTACGAGTCAC
CGACATCCTCATCTGGATCTTCACCCTGTTCTCCACCAATCGAGTTATCG
GATCATCATCGCAAAGATGTCTGCTTATCCAATGAAAATATTCAATACAT
CGATATTCCTCCACATGAACGCCAACCTTTCTATCTATCTGAAGAAGAGA
AGCGTACACTCATCATGGAAGGTCTTCCCGTACCGCAAGGTTTACCGCTT
AACAAATCTGAAGAACGCGCCTTGAAAAAGGTTCGAAGGAAAATCAAGAA
CAAGATCTCCGCTCAAGAAAGCAGaaggaaaaagaaagaatatatGGAAT
CGTTAGAGAAAAAAGTTGACTGTTATGCATCTGAAAACTCAATACTCAAG
AAGAAAGTGGGAAGTTTAGAAGTTGCCAATCGTTCATTGATCATGCAAGT
ACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAGTTGCA
AATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGC
AAAGATTTCTCCACCTTCTCCTTCCAATGAATGATTATGGAGACAATGGA
TGTTGACCTATCAGTTGTCAAGAAAGAACGAATGGATTTGGACGGAGAAT
ATGGAAACATTTTGGATAATTTCACAACGGAAAATGAATATGAAAGCTTC
CCCAATACTAACTCTATCTCTTGCAACGAAGATGAAGACGTGAACGTTGA
TTGGTTAACCAGCTTCTTTGATGAACCAACGCACGATAGCCTGTCCGGAT
TAAACCCACCATTAAGTGATATCTCGGACAGCGGAACCACTTTTTCACGA
ATCACATCTATAAATTGTACATCTGATATTTTACTCGATTCTTACCCAAC
TTTCTCTGAAGATTATGAAGCTACCATGCCAACATCCGAAACGACAAATA
GCACAGAACTTATTAAACTTTCACCCAAAATTTCGCCGGCAGTATGCAGT
AGTAATAACCCATTCTTATCACAAACACATTGTAATAATAGTAAAGACAT
TGTTTTAGGCTCGTTGAAGAGTCATCCAGAACTGATGAAAGTGAAAACAG
AGGAGCCTTCTAGCATAGAGGAACTACCTACTAAAGAAACAACTTCTCCA
ACACCAACAACCTTTCTATCGAATTCTACAGACACCAAACCacaacaaaa
acttttactctTCATGAACACCCCTGAAAATCGGGCCAAATTAGCGGGAA
CAAATTTTAATATCATAAACGCGAACTTATTAAGTAAAATatctggaaat
caaaatcaagacTCTTCTGGCAATAATATTAATTTGAGTACTAGTAATAC
GAGCAAACAAACAATGAATCTAATTAATTTGAAGAAATGTATTAGGTTAA
ATAACACAGTACGTAGCAAAGAGGACTCTTTAATTAAACCGACGTCAGAT
GATACGGTGACGGCTTCCACTGTTAATGCAACGCTGCAATCCATAATGGC
TGCCAATCATCAAAGagagaagaaaattttaccagTAGATATTTTGAACG
GACACACGTATGGCTTGACGCGCAAGGATAGTCATGATATTGACTCAGGT
TACGAGTCACCGACATCCTCATCTGGATCTTCACCCTGTTCTCCACCAAT
CGAGTTATCGGATCATCATCGCAAAGATGTCTGCTTATCCAATGAAAATA
TTCAATACATCGATATTCCTCCACATGAACGCCAACCTTTCTATCTATCT
GAAGAAGAGAAGCGTACACTCATCATGGAAGGTCTTCCCGTACCGCAAGG
TTTACCGCTTAACAAATCTGAAGAACGCGCCTTGAAAAAGGTTCGAAGGA
AAATCAAGAACAAGATCTCCGCTCAAGAAAGCAGaaggaaaaagaaagaa
tatatGGAATCGTTAGAGAAAAAAGTTGACTGTTATGCATCTGAAAACTC
AATACTCAAGAAGAAAGTGGGAAGTTTAGAAGTTGCCAATCGTTCATTGA
TCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTNGTTT
AGAAGTTGCAAATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCC
TTGTCACAGCAAAGATTTCTCCACCTTCTCCTTCCAATGAATGATTATGG
AGACAATGGATGTTGACCTATCAGTTGTCAAGAAAGAACGAATGGATTTG
GACGGAGAATATGGAAACATTTTGGATAATTTCACAACGGAAAATGAATA
TGAAAGCTTCCCCAATACTAACTCTATCTCTTGCAACGAAGATGAAGACG
TGAACGTTGATTGGTTAACCAGCTTCTTTGATGAACCAACGCACGATAGC
CTGTCCGGATTAAACCCACCATTAAGTGATATCTCGGACAGCGGAACCAC
TTTTTCACGAATCACATCTATAAATTGTACATCTGATATTTTACTCGATT
CTTACCCAACTTTCTCTGAAGATTATGAAGCTACCATGCCAACATCCGAA
ACGACAAATAGCACAGAACTTATTAAACTTTCACCCAAAATTTCGCCGGC
AGTATGCAGTAGTAATAACCCATTCTTATCACAAACACATTGTAATAATA
GTAAAGACATTGTTTTAGGCTCGTTGAAGAGTCATCCAGAACTGATGAAA
GTGAAAACAGAGGAGCCTTCTAGCATAGAGGAACTACCTACTAAAGAAAC
AACTTCTCCAACACCAACAACCTTTCTATCGAATTCTACAGACACCAAAC
CacaacaaaaacttttactctTCATGAACACCCCTGAAAATCGGGCCAAA
TTAGCGGGAACAAATTTTAATATCATAAACGCGAACTTATTAAGTAAAAT
atctggaaatcaaaatcaagacTCTTCTGGCAATAATATTAATTTGAGTA
CTAGTAATACGAGCAAACAAACAATGAATCTAATTAATTTGAAGAAATGT
ATTAGGTTAAATAACACAGTACGTAGCAAAGAGGACTCTTTAATTAAACC
GACGTCAGATGATACGGTGACGGCTTCCACTGTTAATGCAACGCTGCAAT
CCATAATGGCTGCCAATCATCAAAGagagaagaaaattttaccagTAGAT
ATTTTGAACGGACACACGTATGGCTTGACGCGCAAGGATAGTCATGATAT
TGACTCAGGTTACGAGTCACCGACATCCTCATCTGGATCTTCACCCTGTT
CTCCACCAATCGAGTTATCGGATCATCATCGCAAAGATGTCTGCTTATCC
AATGAAAATATTCAATACATCGATATTCCTCCACATGAACGCCAACCTTT
CTATCTATCTGAAGAAGAGAAGCGTACACTCATCATGGAAGGTCTTCCCG
TACCGCAAGGTTTACCGCTTAACAAATCTGAAGAACGCGCCTTGAAAAAG
GTTCGAAGGAAAATCAAGAACAAGATCTCCGCTCAAGAAAGCAGaaggaa
aaagaaagaatatatGGAATCGTTAGAGAAAAAAGTTGACTGTTATGCAT
CTGAAAACTCAATACTCAAGAAGAAAGTGGGAAGTTTAGAAGTTGCCAAT
CGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAA
GATTTNGTTTAGAAGTTGCAAATCGTTCATTGATCATGCAAGTACAGAAG
CTTCAAGCCCTTGTCACAGCAAAGATTTCTCCACCTTCTCCTTCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034877XLOC_034877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055421-exon-scaffold_253-1491911889:710253..710900TCONS_00055421-exon-scaffold_253-1491911889:710253..710900Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1510915933:710253..710900TCONS_00055421-exon-scaffold_253-1510915933:710253..710900Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1575043694:710253..710900TCONS_00055421-exon-scaffold_253-1575043694:710253..710900Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1491911889:713766..714645TCONS_00055421-exon-scaffold_253-1491911889:713766..714645Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1510915933:713766..714645TCONS_00055421-exon-scaffold_253-1510915933:713766..714645Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1575043694:713766..714645TCONS_00055421-exon-scaffold_253-1575043694:713766..714645Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1491911889:716063..716181TCONS_00055421-exon-scaffold_253-1491911889:716063..716181Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1510915933:716063..716181TCONS_00055421-exon-scaffold_253-1510915933:716063..716181Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1575043694:716063..716181TCONS_00055421-exon-scaffold_253-1575043694:716063..716181Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1491911889:716441..716646TCONS_00055421-exon-scaffold_253-1491911889:716441..716646Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1510915933:716441..716646TCONS_00055421-exon-scaffold_253-1510915933:716441..716646Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1575043694:716441..716646TCONS_00055421-exon-scaffold_253-1575043694:716441..716646Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1491911889:717571..717807TCONS_00055421-exon-scaffold_253-1491911889:717571..717807Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1510915933:717571..717807TCONS_00055421-exon-scaffold_253-1510915933:717571..717807Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1575043694:717571..717807TCONS_00055421-exon-scaffold_253-1575043694:717571..717807Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1491911889:718401..719063TCONS_00055421-exon-scaffold_253-1491911889:718401..719063Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1510915933:718401..719063TCONS_00055421-exon-scaffold_253-1510915933:718401..719063Clytia hemisphaericaexon
TCONS_00055421-exon-scaffold_253-1575043694:718401..719063TCONS_00055421-exon-scaffold_253-1575043694:718401..719063Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055421-proteinTCONS_00055421-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:710253..719063 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.864631	0.503171	0.17369	0.278065	64.7131	53.6487	41.7933	47.4183	22.3048	20.0005	13.705	24.1852	14.8675	10.2195	16.6216	29.2589	26.0153	20.1623	5.5592	9.99025	11.2722	12.213	10.7611	12.7781	12.6221	17.9597	1.52978	0.836719	2.43014	2.27091
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00055421 vs. Swiss-Prot (Human)
Match: CR3L1 (Cyclic AMP-responsive element-binding protein 3-like protein 1 OS=Homo sapiens GN=CREB3L1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.810e-30
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 1 
Query: 1651 PHERQ----PFYLSEEEKRTLIMEGLPVPQGLPLNKSEERALKKVRRKIKNKISAQESRRKKKEYMESLEKKVDCYASENSILKKKVGSLEVANRSLIMQVQKLQALVTAKI 1974
            PH+ Q    P  L+EEEKRTLI EG P+P  LPL K+EE+ALK+VRRKIKNKISAQESRRKKKEY+E LEKKV+ + SEN+ L KKV +LE ANR+L+ Q+QKLQ LVT KI
Sbjct:  250 PHKLQGTSGPLLLTEEEKRTLIAEGYPIPTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANRTLLQQLQKLQTLVTNKI 361
The following BLAST results are available for this feature:
BLAST of TCONS_00055421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CR3L13.810e-3067.86Cyclic AMP-responsive element-binding protein 3-li... [more]
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