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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055421 ID=TCONS_00055421|Name=TCONS_00055421|organism=Clytia hemisphaerica|type=transcript|length=2753bp
aaacaacaagacatttgattggcttagacCGCAACAAAAGACGCCTCTGA
TTGGTCGAGAAATTAATTTGAATAAGTTGTAAAACAATAGTATTTGTTTT
CGATTGTGTCTGTAATGTCTGAACAAAGGAGATTGAAATTAAAGGTCTTC
TTGATAGAGTATCAATTCTAAGTAGTCGATTTAGTAGTCTCAGCTTTGAT
TATAGTATGCGGCTAAGACGATTTCtagtttttggaaaaaacttgaactg
aaaaatgagtgttttttttttttaacataagAGGACTGGATCACTTGATT
TGACAGTTGATGTTTCACCTATGAggaaaatttgatttattttttaaatt
ttgttcgtCAATTTTTatagtgtttcttataaaaagaaaaaaagtcgaga
TTTGACGCTTACCAAAACAGAAGATTGGTATAAACTCGAACACAGATAAT
ATTGTGGTACCCCTTTTTGCCCCTTTTTAAACGCGATAACGGAACAACGA
GCAAAACAAAATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCA
AGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACATTTTGGATAAT
TTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCTC
TTGCAACGAAGATGAAGACGTGAACGTTGATTGGTTAACCAGCTTCTTTG
ATGAACCAACGCACGATAGCCTGTCCGGATTAAACCCACCATTAAGTGAT
ATCTCGGACAGCGGAACCACTTTTTCACGAATCACATCTATAAATTGTAC
ATCTGATATTTTACTCGATTCTTACCCAACTTTCTCTGAAGATTATGAAG
CTACCATGCCAACATCCGAAACGACAAATAGCACAGAACTTATTAAACTT
TCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAATAACCCATTCTTATC
ACAAACACATTGTAATAATAGTAAAGACATTGTTTTAGGCTCGTTGAAGA
GTCATCCAGAACTGATGAAAGTGAAAACAGAGGAGCCTTCTAGCATAGAG
GAACTACCTACTAAAGAAACAACTTCTCCAACACCAACAACCTTTCTATC
GAATTCTACAGACACCAAACCacaacaaaaacttttactctTCATGAACA
CCCCTGAAAATCGGGCCAAATTAGCGGGAACAAATTTTAATATCATAAAC
GCGAACTTATTAAGTAAAATatctggaaatcaaaatcaagacTCTTCTGG
CAATAATATTAATTTGAGTACTAGTAATACGAGCAAACAAACAATGAATC
TAATTAATTTGAAGAAATGTATTAGGTTAAATAACACAGTACGTAGCAAA
GAGGACTCTTTAATTAAACCGACGTCAGATGATACGGTGACGGCTTCCAC
TGTTAATGCAACGCTGCAATCCATAATGGCTGCCAATCATCAAAGagaga
agaaaattttaccagTAGATATTTTGAACGGACACACGTATGGCTTGACG
CGCAAGGATAGTCATGATATTGACTCAGGTTACGAGTCACCGACATCCTC
ATCTGGATCTTCACCCTGTTCTCCACCAATCGAGTTATCGGATCATCATC
GCAAAGATGTCTGCTTATCCAATGAAAATATTCAATACATCGATATTCCT
CCACATGAACGCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACT
CATCATGGAAGGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTG
AAGAACGCGCCTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCC
GCTCAAGAAAGCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAA
AAAAGTTGACTGTTATGCATCTGAAAACTCAATACTCAAGAAGAAAGTGG
GAAGTTTAGAAGTTGCCAATCGTTCATTGATCATGCAAGTACAGAAGCTT
CAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAGTTGCAAATCGTTCAT
TGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTCT
CCACCTTCTCCTTCCAATGACAAGCAACATGAAATCATTGacGTTGAACA
ATGAACTAGTCGAAATCAAAATGGAGACAACTTAATCAATCTTTCGGAGA
AGCAGGCCacttttatgacttttttataGATAGATAGGGGTTTAAAAAca
caatcaaacaaaatttgtaaataataacTTTTAATACAGCTGTATCAATA
TTTTCGTGTACAGTGATAGCCCCTTAACCCCCTGAATAACCAATATCCCA
AATAATTTTGTAAGTAgagaatttcaacatttttttagaaaattgctgAC
TCAGCATATTGTTATATCATAGACGCTTTGGTGACGAATTCGTTGTTGTT
TAGGGTACTAATCCCAAAATGACTTTCAATAAACgtcaaataaaatatta
tttttggaccatttgaaatattttaaatatgCAACCCCAAATAATTATTA
TATTGTATTAACACAATTTAACTTATAGGTTTTCTTACCCAACAAATTTT
ATCAGTAACTTAGCTAGCTTTTTATTTATTACCATTTTTTCCTCCCTGCT
AATTTGTAGTAAaacgaaattcaattttttgaaaaaaattcaaatgaatA
TATAACATGAATCGACATCTTACTTCGCGTGAAcaataattataataata
atgatgatgCCCATTTCTTGTTACCTCATTGGAACCAATATTTTTTATGC
AGG Run BLAST on NCBI protein sequence of TCONS_00055421-protein >TCONS_00055421-protein ID=TCONS_00055421-protein|Name=TCONS_00055421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MIMETMDVDLSVVKKERMDLDGEYGNILDNFTTENEYESFPNTNSISCNE
DEDVNVDWLTSFFDEPTHDSLSGLNPPLSDISDSGTTFSRITSINCTSDI
LLDSYPTFSEDYEATMPTSETTNSTELIKLSPKISPAVCSSNNPFLSQTH
CNNSKDIVLGSLKSHPELMKVKTEEPSSIEELPTKETTSPTPTTFLSNST
DTKPQQKLLLFMNTPENRAKLAGTNFNIINANLLSKISGNQNQDSSGNNI
NLSTSNTSKQTMNLINLKKCIRLNNTVRSKEDSLIKPTSDDTVTASTVNA
TLQSIMAANHQREKKILPVDILNGHTYGLTRKDSHDIDSGYESPTSSSGS
SPCSPPIELSDHHRKDVCLSNENIQYIDIPPHERQPFYLSEEEKRTLIME
GLPVPQGLPLNKSEERALKKVRRKIKNKISAQESRRKKKEYMESLEKKVD
CYASENSILKKKVGSLEVANRSLIMQVQKLQALVTAKIXFRSCKSFIDHA
STEASSPCHSKDFSTFSFQ Run BLAST on NCBI transcript from alignment at scaffold_253:710253..719063+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055421 ID=TCONS_00055421|Name=TCONS_00055421|organism=Clytia hemisphaerica|type=transcript|length=8811bp|location=Sequence derived from alignment at scaffold_253:710253..719063+ (Clytia hemisphaerica)
aaacaacaagacatttgattggcttagacCGCAACAAAAGACGCCTCTGA
TTGGTCGAGAAATTAATTTGAATAAGTTGTAAAACAATAGTATTTGTTTT
CGATTGTGTCTGTAATGTCTGAACAAAGGAGATTGAAATTAAAGGTCTTC
TTGATAGAGTATCAATTCTAAGTAGTCGATTTAGTAGTCTCAGCTTTGAT
TATAGTATGCGGCTAAGACGATTTCtagtttttggaaaaaacttgaactg
aaaaatgagtgttttttttttttaacataagAGGACTGGATCACTTGATT
TGACAGTTGATGTTTCACCTATGAggaaaatttgatttattttttaaatt
ttgttcgtCAATTTTTatagtgtttcttataaaaagaaaaaaagtcgaga
TTTGACGCTTACCAAAACAGAAGATTGGTATAAACTCGAACACAGATAAT
ATTGTGGTACCCCTTTTTGCCCCTTTTTAAACGCGATAACGGAACAACGA
GCAAAACAAAATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCA
AGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACATTTTGGATAAT
TTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCGt
aagtttcttgtttttatgCTACATTCTATCTCGTTTTACTTTCAGTTTTA
TTTGTCTCGCTATGCCCCTTGCTATGacttgaaaatatgttttttctttc
atttttgattttgctttttataagaaactcgGAATTTCAATAGTctgtaa
aaatgacaaaatctaGATAAGGCGGACTATTTAGGATTAGAAGGGAGGAA
AATTTCATGAATGAATTCatagaaatgtttattttttgctGTTTGTTATT
CATCATTACTTTTAGAACAAATTCGCTAATCCCAGGGATAGATATTTGAC
TATTTCCGGGAGGGGGCTTGACAATAGATCGATTGTATTTGTGAATgatg
acagtgatgatgatATTATTTGGAACCATAGCATCGAACAAAAATTGTAT
TCATTCTTTTAAAACGTTATACCCTCTGTTTGTTTACTTTCAATAATGAC
ATCAAACAAGATTTTCTCTAAAAAATATGTCAGCGTAGTACAACTTAACG
CTAACGGAGAAATAAGAGTCCTTGTTTTTCTTGTGGGTAATTCATAAAGT
TCAAAAGACTTGCCGTTTAAgttgttttgtttatgttttgccCGTGCTAG
TGAAAcaccaacaaatttttttgtgaaGAGCACTTCTCTCAAACTGTCGT
CTTTCGGTACGACTCTTatcttttttgtgaaagaagaAAACAATTCGGTA
TTTTTGCGTGCCTTGTAAATCAGCCAAGCgtttttttctgagaaaaagtt
tttctttttcttgtctCTTTATATTCtgataaaaaatatgttttttgttg
aaaaattgcaaCTTTGAATACCGAATCTGttgcttttttctaattttcat
catacatcgagaacaaaacaaaacaactcCCGTCTTTTTTTCAATCGGAA
GTGATTCTCGATCACTTTTTGTACTAGTTTCATTCAATCGAGATAAAAAT
CAATCAAGCCGGATAAATTAGTCTCGAGTAATTAAGCCAAAATAACTACT
CAAAGGAAAACCCATTTAATTTTTCTCTTATATAAATCCGACGATTAGTA
AAGACGTAAGACCTTAACCATCcgtagaaggaaaaaaaatgcgTCATTGC
CGTACTAAATGAGTCTTTTTGGGGTCCTGTTTGTAAACTTTGATAAAATT
AACGGCAGCCACCGCctgtaaagattttaaaaatgtcaaggAATTTTAAT
TCAGCggattttttggggaaaattcaaaaatttaaagtgTAGAGATCTTC
GTTTTCATAAATTGCGCCGAAATTAAGGCCAGAGAGTGTTCATTGACATT
GAAAAAACCATTTGGGTCTTTCGCAATTATTCATAACCCCTTCACGTGAT
AAAGTTTAAAGGAAATTTTCACTTCGAAACTCATGCGAGTGTTGCGGTCT
AATAGAGCGGTTACAGCGAAACTTCACGAAATAACCGTCATGCAAAGCTT
TATAACCTTATCGTGTTCTTAAACTACACTTGCATTGAAAGAAAAAGCTC
GAGATCATGTTTCCTTATCTTCAAGTCAAGGGGAGTTGAGGCTGTCTGAA
ATCTACAGGCACGGAAATGAACCATAGTTTAAGTTAGGCATATTCGATGT
CGATTTTCAactatcaaaacatatcaaaaagccGTATGTGTGCGTAAAGT
ATACTGTGTTTTGATATGTACCCCTCCTAGAGTGGCAATGACAAACTGAA
GGGAGTTTAATAACAAACTTTTGGATATAATACAAAAAGATGATAATAGG
GGAATCGTTTTCAAGAGGTGCGAGATCAATAGTCAAAACTCGGCCTTCCT
GTAAAATAGCTGTGCAAAGGGCTAAGCTAGGGCATTAAATTGCGGCCTTA
TTTACTAGCATTTCCTTTTGTTGACTGTGAGAGTGTCCCTGAAAGATTTG
acaggaaaaaataataacttttctTGTCATAAAATCACGTAATAGAAACC
CCCTTAAATTGTAACATTTTTGAGGAGTGATACTGTTTTAATAACTTGGT
TTATTAAGCTTTTCACCTTTTTATGATAAAGTCGCCAATGAGTTATAAGA
ATAAAAGATACCACCTTCATAAAAAAAGGCAATGCCTGACAGAGGACTTT
GTTTCGAACTGTCAAATCCACAGCTTGATTGGTTAACAGGATTTCATTCA
TGAATAGTCTTGCTGTAATTACTCCGACGTtgtaaattttcattaaaaat
tgctttttaatttcAACCAATCTTGTCAGAAGAGGaaatactttttttac
tttactTGACTTTTTTGATAACAGGCCAATAGGAAGTAAATTAAAATACA
ATGATTTGCGGGAAAATAATGTTTGCCTCCTTAATTGGTAAAATAACCTT
GTATCAAGGAAGTTTTTAAATCACTGCATATTTCAGCATATTTTAACAAA
TTCACTATTTAAAATGCATTTAAgaataaaaggaaaataaaattgaagtc
ccgaaaaacttttaaaagtgaCATAAAATGACgagaacagaaaaaaaaat
tagctttCTTAATTTTCCTGAAACTTAGAAATCAAtccttttttaaatgt
tttgtcgGAGTTTGATATTTCCTGGAGTAAATGATTAGCATTTCTTTTCA
CGTCTAAATAAGCATCGTCAAGAGGGAAGTAGGCGGGACTATGTTGCGTT
CAAAGTTTGGCACATGACATCAAGGTGTGTGTCCGTGACTCTTTCCATGT
CCTCCGTTTCTATGCGACATTTAACCTTGGTAATGCTGTACATTCATTGC
TGTACTTAGTGCTCGGGTTTTATTGCTAATTTAAATGATCTAAACGTCTG
TACTCACAAAAGCAAAGAGACTTTTTTGCAgcatttattcattttttcct
tttctcaTTTTAGTCTTGCAACGAAGATGAAGACGTGAACGTTGATTGGT
TAACCAGCTTCTTTGATGAACCAACGCACGATAGCCTGTCCGGATTAAAC
CCACCATTAAGTGATATCTCGGACAGCGGAACCACTTTTTCACGAATCAC
ATCTATAAATTGTACATCTGATATTTTACTCGATTCTTACCCAACTTTCT
CTGAAGATTATGAAGCTACCATGCCAACATCCGAAACGACAAATAGCACA
GAACTTATTAAACTTTCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAA
TAACCCATTCTTATCACAAACACATTGTAATAATAGTAAAGACATTGTTT
TAGGCTCGTTGAAGAGTCATCCAGAACTGATGAAAGTGAAAACAGAGGAG
CCTTCTAGCATAGAGGAACTACCTACTAAAGAAACAACTTCTCCAACACC
AACAACCTTTCTATCGAATTCTACAGACACCAAACCacaacaaaaacttt
tactctTCATGAACACCCCTGAAAATCGGGCCAAATTAGCGGGAACAAAT
TTTAATATCATAAACGCGAACTTATTAAGTAAAATatctggaaatcaaaa
tcaagacTCTTCTGGCAATAATATTAATTTGAGTACTAGTAATACGAGCA
AACAAACAATGAATCTAATTAATTTGAAGAAATGTATTAGGTTAAATAAC
ACAGTACGTAGCAAAGAGGACTCTTTAATTAAACCGACGTCAGATGATAC
GGTGACGGCTTCCACTGTTAATGCAACGCTGCAATCCATAATGGCTGCCA
ATCATCAAAGagagaagaaaattttaccagTAGATATTTTGAACGGACAC
ACGTATGGCTTGACGCGCAAGGATAGTCATGATATTGACTCAGGTAAGAT
TTCAATTCGACTGACTTCGGTACTTTTCTGCTATCCGGATCATTTCGCCT
GAATTTCCGTCGCTCAGACAAATAGTCTTATATATTGTCAAATTGTTTGC
aagcaatttttcaaattattttggttttttaAGAATGACGGGCGACATAA
TAACACTCTGAAACACGACCACACGGAGCTTCGATTTCTCGTTTATATTG
GTGGTCTCTAAAGTATTTTTATCTGACGAAGCCGCAACCAAATTTAgagt
tttatagaaaaactctCGAAATGGGTTTTCTAAATAGAGTACATAGGCAC
TATAAGCAAATGTGCCTGGAAAATCTTTAATGTCTTTAATAGATTCTTAT
ACTACTTTCCAAATGGTAGCTCCTTTTCATAGATACGGAAGCAAATACta
tgttttcaaatatttctgaaATTGAGGGTTTCCTctgaattttatttgaa
atttcagtTTTCAACTGTTTGTGAAGTCGAATATTTCTCTTAAATTTCGT
TATATGTGCTTAGCTGCTTTTATAACCTATACGATAATATTGACCTTCAT
ATTATTTCTCAAAGCATTCTTAATCTATATTTGAAGTTTGATCAactgta
ttttaagaaaattaataGAAAAATGAAGAGGAGAATAAAAATCGGAGGTT
GTCGGagctaaataaaaaaacaatgaaattcccACTCGTTTTCTAACGAT
TTTTGAAACTCGTGTGTGAAAATTTCGTTATTAGGCAACCATTTCATAAA
TTTAGAATTTCGTTACAATAGGAAAGGTGCAAATATCTTTTTCTTCTCTA
AAGAAATTGCTCTTCGTTTCAACGATTTGAAGTTTCGTAGCAACATCGAC
TTTTTCATATCACACTTTTCTGTCATATGTAATTTCTCGTGTAACCGAAA
ATTTTCAGCTTCGTTTTCGTTAGCCtcttttacttaaaattcgaaaagtt
aacTAAAAAAGAACCAAGTCTTCATTCCTCTTCAAACTAAATCCAGATCC
Agtgtcaaaacacttgaaaggcttctatttttcgaaaatcgtcaaagtgg
aactcactaagaaacgaaaCGGGGTGAAAAATcctggtttttggtgaggt
actcGCTATGGTTTCCCCTGCTTTTGCCAAACTCCCGAAAGGCCTTCCTT
CCGAACCTCTCAAACATAGAGGCATATCTGCTATTAAAACTAACTATAAG
AACTCTAGACTAATGATAGTTTGTCAAGCCTACTGCATTGCAAATTTTGA
CTAACTTGCCCATTCACATTTACGAAGATTTGAACTGTAGCGGTTATGAA
TAGCTTCAGGTCCTGTAGAGGTGTGGATGCATCACTTTTTATGTTGCTCA
ACTTGACAAAAAAGTGATACAACATTAATTGTCCAATCACTGTTCTTCTT
TATCACACAGGTTACGAGTCACCGACATCCTCATCTGGATCTTCACCCTG
TTCTCCACCAATCGAGTTATCGGATCATCATCGCAAAGATGTCTGCTTAT
CCAATGAAAATATTCAATACATCGATATTGTGAGTAACCAAACCCTTTTT
GTTGTAGAAGCAAAATAGTTACCTCTCCCCGAGCTCCAAATGAAGCCATA
CATCTCGTTTGAGATTGAAACTGTATATGGTGTATGGACACTGGTAGCAT
AGAAGGGTTTTAAATAGATTACTGCTTCTTACCCTTGTTGAATATGAATT
GAATGGTTAGAGTTACAATACCCTTGAATCGATCATTTCTGCCTGTTGCA
AACGTTAAGgttcaatttctttctttttttccaaacaGCCTCCACATGAA
CGCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACTCATCATGGA
AGGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTGAAGAACGCG
CCTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCCGCTCAAGAA
AGCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAAAAAGTGAGT
ACTATTTTCATCCTAAGCAATATTTTACGCCGGCCTTTATTCAACGACAG
CCAAACAAAATCTCCAATAAGGGCTGGTGTAAAGAGGGCCGACAAGTAGC
TGAATTATCATTAATCAGCCTTCGTATAGGTGAATTTGTAAAGGGAAAGG
CCAGGGATTAGAAGGGGAAGAAATTTTACAGGAAAAGGTTAGATGACGTT
CCTAAGCAGCTAAAAACTAACCCCGAAAAATTCGAAAGAAtgtaaaaagg
aaagaaaactaTCATCAGTACAATGACTCACGTTTTCTATTTCTTTCATc
ggaaaaattctctttttaatCCTTATGGATgacaggaatttttttaaaac
tagaCGTCTTTGTGTGCAGCCTTACAACGGAAACATTGTAAAACTCTTTG
TTGATCCTATATTTGATACACCTAGCAGTCTACTACAATGCATTCTTAAT
AGCAGTTATTTAACTACAGAGGTATTCCACTTCCATAACCCATTAGACCT
CATTATAGACAATACAATCAATGTAATTATACTTTGTTTTTTGTGTTCAT
TTTCCGCGACGCGACGGGGAATTACGAGAGCTCTTTTTCCTTTTCCGATA
TCGAANCATTTTCAGCGACGCGACGGGGAATTACGAGAGCTCTTTTTCCT
TTTCCGATATCGAATTTGTATGATAATTTTGCATCAAATCAGCctgtttt
tttctcaataatgATCGACCTTGTCTATTCCACCTACTGTAATGTGAGGG
AAATTGTTATATACAGCCCTGTGTACAGTACACCGGTTCAAGTAATAAAG
GGCGTAAAAATCTCGATCAAGATCCATTATTTTCAACTCGAGCATTTTCC
GagcctttctttttcttcaaaccGTTGTACCTGACATCTaatctttattt
gcttttaATTTCCTTCAGAGTTGACTGTTATGCATCTGAAAACTCAATAC
TCAAGAAGAAAGTGGGAAGTTTAGAAGTTGCCAATCGTTCATTGATCATG
CAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAG
TTGCAAATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTC
ACAGCAAAGATTTCTCCACCTTCTCCTTCCAATGACAAGCAACATGAAAT
CATTGGTAAGTCCTTAACAATTGTATTTCCGAAAAAACTAAAACGTGGCT
CCTCGTCcctgtgtatcccaggctttatttacattaCTAATGAACGCTAG
TATAATCTGGCGCTATCAGTGAGCATCAAAAGGCCGATGATatgcaggga
acgaggttgtgtTGTGAGTGTGAGTTGACCTTGAAGTTCTTAAACGTCCT
TCCTTTATGGAATGTTTTCTTTATCATCTAAGGATATCTGATAAGCTAGA
GATTATTGATGTCTACATAATGACATTTCTTTAAAACTCTCCAATAATCT
TTTAGAATTAccttgatttgaattttttttcggcatATTTCGGAGAATTC
CTCTACAAATGACAGAGGGAGAAGAGGGTGACCAGTATATAACAAACTTG
AGCAATTCTTTGCAAAGGTGCAATATCTGTGTTGGGAGTCCACTGGGAAA
TTAATTCGTCTGATTTATTTAATCATTTGCTGGGATAATTATGACTTCAG
ATGATTGATCAATATGATCAAAATGTGGGTTTTCTCTGATACTTCTACAA
GACAAATGGTATATTTTTTAACCATTCtttattatttctttattttagac
GTTGAACAATGAACTAGTCGAAATCAAAATGGAGACAACTTAATCAATCT
TTCGGAGAAGCAGGCCacttttatgacttttttataGATAGATAGGGGTT
TAAAAAcacaatcaaacaaaatttgtaaataataacTTTTAATACAGCTG
TATCAATATTTTCGTGTACAGTGATAGCCCCTTAACCCCCTGAATAACCA
ATATCCCAAATAATTTTGTAAGTAgagaatttcaacatttttttagaaaa
ttgctgACTCAGCATATTGTTATATCATAGACGCTTTGGTGACGAATTCG
TTGTTGTTTAGGGTACTAATCCCAAAATGACTTTCAATAAACgtcaaata
aaatattatttttggaccatttgaaatattttaaatatgCAACCCCAAAT
AATTATTATATTGTATTAACACAATTTAACTTATAGGTTTTCTTACCCAA
CAAATTTTATCAGTAACTTAGCTAGCTTTTTATTTATTACCATTTTTTCC
TCCCTGCTAATTTGTAGTAAaacgaaattcaattttttgaaaaaaattca
aatgaatATATAACATGAATCGACATCTTACTTCGCGTGAAcaataatta
taataataatgatgatgCCCATTTCTTGTTACCTCATTGGAACCAATATT
TTTTATGCAGG Coding sequence (CDS) from alignment at scaffold_253:710253..719063+ >TCONS_00055421 ID=TCONS_00055421|Name=TCONS_00055421|organism=Clytia hemisphaerica|type=CDS|length=7800bp|location=Sequence derived from alignment at scaffold_253:710253..719063+ (Clytia hemisphaerica)
ATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCAAGAAAGAACG
AATGGATTTGGACGGAGAATATGGAAACATTTTGGATAATTTCACAACGG
AAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCTCTTGCAACGAA
GATGAAGACGTGAACGTTGATTGGTTAACCAGCTTCTTTGATGAACCAAC
GCACGATAGCCTGTCCGGATTAAACCCACCATTAAGTGATATCTCGGACA
GCGGAACCACTTTTTCACGAATCACATCTATAAATTGTACATCTGATATT
TTACTCGATTCTTACCCAACTTTCTCTGAAGATTATGAAGCTACCATGCC
AACATCCGAAACGACAAATAGCACAGAACTTATTAAACTTTCACCCAAAA
TTTCGCCGGCAGTATGCAGTAGTAATAACCCATTCTTATCACAAACACAT
TGTAATAATAGTAAAGACATTGTTTTAGGCTCGTTGAAGAGTCATCCAGA
ACTGATGAAAGTGAAAACAGAGGAGCCTTCTAGCATAGAGGAACTACCTA
CTAAAGAAACAACTTCTCCAACACCAACAACCTTTCTATCGAATTCTACA
GACACCAAACCacaacaaaaacttttactctTCATGAACACCCCTGAAAA
TCGGGCCAAATTAGCGGGAACAAATTTTAATATCATAAACGCGAACTTAT
TAAGTAAAATatctggaaatcaaaatcaagacTCTTCTGGCAATAATATT
AATTTGAGTACTAGTAATACGAGCAAACAAACAATGAATCTAATTAATTT
GAAGAAATGTATTAGGTTAAATAACACAGTACGTAGCAAAGAGGACTCTT
TAATTAAACCGACGTCAGATGATACGGTGACGGCTTCCACTGTTAATGCA
ACGCTGCAATCCATAATGGCTGCCAATCATCAAAGagagaagaaaatttt
accagTAGATATTTTGAACGGACACACGTATGGCTTGACGCGCAAGGATA
GTCATGATATTGACTCAGGTTACGAGTCACCGACATCCTCATCTGGATCT
TCACCCTGTTCTCCACCAATCGAGTTATCGGATCATCATCGCAAAGATGT
CTGCTTATCCAATGAAAATATTCAATACATCGATATTCCTCCACATGAAC
GCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACTCATCATGGAA
GGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTGAAGAACGCGC
CTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCCGCTCAAGAAA
GCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAAAAAAGTTGAC
TGTTATGCATCTGAAAACTCAATACTCAAGAAGAAAGTGGGAAGTTTAGA
AGTTGCCAATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTG
TCACAGCAAAGATTTNGTTTAGAAGTTGCAAATCGTTCATTGATCATGCA
AGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTCTCCACCTTCTC
CTTCCAATGAATGATTATGGAGACAATGGATGTTGACCTATCAGTTGTCA
AGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACATTTTGGATAAT
TTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTAACTCTATCTC
TTGCAACGAAGATGAAGACGTGAACGTTGATTGGTTAACCAGCTTCTTTG
ATGAACCAACGCACGATAGCCTGTCCGGATTAAACCCACCATTAAGTGAT
ATCTCGGACAGCGGAACCACTTTTTCACGAATCACATCTATAAATTGTAC
ATCTGATATTTTACTCGATTCTTACCCAACTTTCTCTGAAGATTATGAAG
CTACCATGCCAACATCCGAAACGACAAATAGCACAGAACTTATTAAACTT
TCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAATAACCCATTCTTATC
ACAAACACATTGTAATAATAGTAAAGACATTGTTTTAGGCTCGTTGAAGA
GTCATCCAGAACTGATGAAAGTGAAAACAGAGGAGCCTTCTAGCATAGAG
GAACTACCTACTAAAGAAACAACTTCTCCAACACCAACAACCTTTCTATC
GAATTCTACAGACACCAAACCacaacaaaaacttttactctTCATGAACA
CCCCTGAAAATCGGGCCAAATTAGCGGGAACAAATTTTAATATCATAAAC
GCGAACTTATTAAGTAAAATatctggaaatcaaaatcaagacTCTTCTGG
CAATAATATTAATTTGAGTACTAGTAATACGAGCAAACAAACAATGAATC
TAATTAATTTGAAGAAATGTATTAGGTTAAATAACACAGTACGTAGCAAA
GAGGACTCTTTAATTAAACCGACGTCAGATGATACGGTGACGGCTTCCAC
TGTTAATGCAACGCTGCAATCCATAATGGCTGCCAATCATCAAAGagaga
agaaaattttaccagTAGATATTTTGAACGGACACACGTATGGCTTGACG
CGCAAGGATAGTCATGATATTGACTCAGGTTACGAGTCACCGACATCCTC
ATCTGGATCTTCACCCTGTTCTCCACCAATCGAGTTATCGGATCATCATC
GCAAAGATGTCTGCTTATCCAATGAAAATATTCAATACATCGATATTCCT
CCACATGAACGCCAACCTTTCTATCTATCTGAAGAAGAGAAGCGTACACT
CATCATGGAAGGTCTTCCCGTACCGCAAGGTTTACCGCTTAACAAATCTG
AAGAACGCGCCTTGAAAAAGGTTCGAAGGAAAATCAAGAACAAGATCTCC
GCTCAAGAAAGCAGaaggaaaaagaaagaatatatGGAATCGTTAGAGAA
AAAAGTTGACTGTTATGCATCTGAAAACTCAATACTCAAGAAGAAAGTGG
GAAGTTTAGAAGTTGCCAATCGTTCATTGATCATGCAAGTACAGAAGCTT
CAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAGTTGCAAATCGTTCAT
TGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTCT
CCACCTTCTCCTTCCAATGAATGATTATGGAGACAATGGATGTTGACCTA
TCAGTTGTCAAGAAAGAACGAATGGATTTGGACGGAGAATATGGAAACAT
TTTGGATAATTTCACAACGGAAAATGAATATGAAAGCTTCCCCAATACTA
ACTCTATCTCTTGCAACGAAGATGAAGACGTGAACGTTGATTGGTTAACC
AGCTTCTTTGATGAACCAACGCACGATAGCCTGTCCGGATTAAACCCACC
ATTAAGTGATATCTCGGACAGCGGAACCACTTTTTCACGAATCACATCTA
TAAATTGTACATCTGATATTTTACTCGATTCTTACCCAACTTTCTCTGAA
GATTATGAAGCTACCATGCCAACATCCGAAACGACAAATAGCACAGAACT
TATTAAACTTTCACCCAAAATTTCGCCGGCAGTATGCAGTAGTAATAACC
CATTCTTATCACAAACACATTGTAATAATAGTAAAGACATTGTTTTAGGC
TCGTTGAAGAGTCATCCAGAACTGATGAAAGTGAAAACAGAGGAGCCTTC
TAGCATAGAGGAACTACCTACTAAAGAAACAACTTCTCCAACACCAACAA
CCTTTCTATCGAATTCTACAGACACCAAACCacaacaaaaacttttactc
tTCATGAACACCCCTGAAAATCGGGCCAAATTAGCGGGAACAAATTTTAA
TATCATAAACGCGAACTTATTAAGTAAAATatctggaaatcaaaatcaag
acTCTTCTGGCAATAATATTAATTTGAGTACTAGTAATACGAGCAAACAA
ACAATGAATCTAATTAATTTGAAGAAATGTATTAGGTTAAATAACACAGT
ACGTAGCAAAGAGGACTCTTTAATTAAACCGACGTCAGATGATACGGTGA
CGGCTTCCACTGTTAATGCAACGCTGCAATCCATAATGGCTGCCAATCAT
CAAAGagagaagaaaattttaccagTAGATATTTTGAACGGACACACGTA
TGGCTTGACGCGCAAGGATAGTCATGATATTGACTCAGGTTACGAGTCAC
CGACATCCTCATCTGGATCTTCACCCTGTTCTCCACCAATCGAGTTATCG
GATCATCATCGCAAAGATGTCTGCTTATCCAATGAAAATATTCAATACAT
CGATATTCCTCCACATGAACGCCAACCTTTCTATCTATCTGAAGAAGAGA
AGCGTACACTCATCATGGAAGGTCTTCCCGTACCGCAAGGTTTACCGCTT
AACAAATCTGAAGAACGCGCCTTGAAAAAGGTTCGAAGGAAAATCAAGAA
CAAGATCTCCGCTCAAGAAAGCAGaaggaaaaagaaagaatatatGGAAT
CGTTAGAGAAAAAAGTTGACTGTTATGCATCTGAAAACTCAATACTCAAG
AAGAAAGTGGGAAGTTTAGAAGTTGCCAATCGTTCATTGATCATGCAAGT
ACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTNGTTTAGAAGTTGCA
AATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGC
AAAGATTTCTCCACCTTCTCCTTCCAATGAATGATTATGGAGACAATGGA
TGTTGACCTATCAGTTGTCAAGAAAGAACGAATGGATTTGGACGGAGAAT
ATGGAAACATTTTGGATAATTTCACAACGGAAAATGAATATGAAAGCTTC
CCCAATACTAACTCTATCTCTTGCAACGAAGATGAAGACGTGAACGTTGA
TTGGTTAACCAGCTTCTTTGATGAACCAACGCACGATAGCCTGTCCGGAT
TAAACCCACCATTAAGTGATATCTCGGACAGCGGAACCACTTTTTCACGA
ATCACATCTATAAATTGTACATCTGATATTTTACTCGATTCTTACCCAAC
TTTCTCTGAAGATTATGAAGCTACCATGCCAACATCCGAAACGACAAATA
GCACAGAACTTATTAAACTTTCACCCAAAATTTCGCCGGCAGTATGCAGT
AGTAATAACCCATTCTTATCACAAACACATTGTAATAATAGTAAAGACAT
TGTTTTAGGCTCGTTGAAGAGTCATCCAGAACTGATGAAAGTGAAAACAG
AGGAGCCTTCTAGCATAGAGGAACTACCTACTAAAGAAACAACTTCTCCA
ACACCAACAACCTTTCTATCGAATTCTACAGACACCAAACCacaacaaaa
acttttactctTCATGAACACCCCTGAAAATCGGGCCAAATTAGCGGGAA
CAAATTTTAATATCATAAACGCGAACTTATTAAGTAAAATatctggaaat
caaaatcaagacTCTTCTGGCAATAATATTAATTTGAGTACTAGTAATAC
GAGCAAACAAACAATGAATCTAATTAATTTGAAGAAATGTATTAGGTTAA
ATAACACAGTACGTAGCAAAGAGGACTCTTTAATTAAACCGACGTCAGAT
GATACGGTGACGGCTTCCACTGTTAATGCAACGCTGCAATCCATAATGGC
TGCCAATCATCAAAGagagaagaaaattttaccagTAGATATTTTGAACG
GACACACGTATGGCTTGACGCGCAAGGATAGTCATGATATTGACTCAGGT
TACGAGTCACCGACATCCTCATCTGGATCTTCACCCTGTTCTCCACCAAT
CGAGTTATCGGATCATCATCGCAAAGATGTCTGCTTATCCAATGAAAATA
TTCAATACATCGATATTCCTCCACATGAACGCCAACCTTTCTATCTATCT
GAAGAAGAGAAGCGTACACTCATCATGGAAGGTCTTCCCGTACCGCAAGG
TTTACCGCTTAACAAATCTGAAGAACGCGCCTTGAAAAAGGTTCGAAGGA
AAATCAAGAACAAGATCTCCGCTCAAGAAAGCAGaaggaaaaagaaagaa
tatatGGAATCGTTAGAGAAAAAAGTTGACTGTTATGCATCTGAAAACTC
AATACTCAAGAAGAAAGTGGGAAGTTTAGAAGTTGCCAATCGTTCATTGA
TCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAAGATTTNGTTT
AGAAGTTGCAAATCGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCC
TTGTCACAGCAAAGATTTCTCCACCTTCTCCTTCCAATGAATGATTATGG
AGACAATGGATGTTGACCTATCAGTTGTCAAGAAAGAACGAATGGATTTG
GACGGAGAATATGGAAACATTTTGGATAATTTCACAACGGAAAATGAATA
TGAAAGCTTCCCCAATACTAACTCTATCTCTTGCAACGAAGATGAAGACG
TGAACGTTGATTGGTTAACCAGCTTCTTTGATGAACCAACGCACGATAGC
CTGTCCGGATTAAACCCACCATTAAGTGATATCTCGGACAGCGGAACCAC
TTTTTCACGAATCACATCTATAAATTGTACATCTGATATTTTACTCGATT
CTTACCCAACTTTCTCTGAAGATTATGAAGCTACCATGCCAACATCCGAA
ACGACAAATAGCACAGAACTTATTAAACTTTCACCCAAAATTTCGCCGGC
AGTATGCAGTAGTAATAACCCATTCTTATCACAAACACATTGTAATAATA
GTAAAGACATTGTTTTAGGCTCGTTGAAGAGTCATCCAGAACTGATGAAA
GTGAAAACAGAGGAGCCTTCTAGCATAGAGGAACTACCTACTAAAGAAAC
AACTTCTCCAACACCAACAACCTTTCTATCGAATTCTACAGACACCAAAC
CacaacaaaaacttttactctTCATGAACACCCCTGAAAATCGGGCCAAA
TTAGCGGGAACAAATTTTAATATCATAAACGCGAACTTATTAAGTAAAAT
atctggaaatcaaaatcaagacTCTTCTGGCAATAATATTAATTTGAGTA
CTAGTAATACGAGCAAACAAACAATGAATCTAATTAATTTGAAGAAATGT
ATTAGGTTAAATAACACAGTACGTAGCAAAGAGGACTCTTTAATTAAACC
GACGTCAGATGATACGGTGACGGCTTCCACTGTTAATGCAACGCTGCAAT
CCATAATGGCTGCCAATCATCAAAGagagaagaaaattttaccagTAGAT
ATTTTGAACGGACACACGTATGGCTTGACGCGCAAGGATAGTCATGATAT
TGACTCAGGTTACGAGTCACCGACATCCTCATCTGGATCTTCACCCTGTT
CTCCACCAATCGAGTTATCGGATCATCATCGCAAAGATGTCTGCTTATCC
AATGAAAATATTCAATACATCGATATTCCTCCACATGAACGCCAACCTTT
CTATCTATCTGAAGAAGAGAAGCGTACACTCATCATGGAAGGTCTTCCCG
TACCGCAAGGTTTACCGCTTAACAAATCTGAAGAACGCGCCTTGAAAAAG
GTTCGAAGGAAAATCAAGAACAAGATCTCCGCTCAAGAAAGCAGaaggaa
aaagaaagaatatatGGAATCGTTAGAGAAAAAAGTTGACTGTTATGCAT
CTGAAAACTCAATACTCAAGAAGAAAGTGGGAAGTTTAGAAGTTGCCAAT
CGTTCATTGATCATGCAAGTACAGAAGCTTCAAGCCCTTGTCACAGCAAA
GATTTNGTTTAGAAGTTGCAAATCGTTCATTGATCATGCAAGTACAGAAG
CTTCAAGCCCTTGTCACAGCAAAGATTTCTCCACCTTCTCCTTCCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055421-exon-scaffold_253-1491911889:710253..710900 | TCONS_00055421-exon-scaffold_253-1491911889:710253..710900 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1510915933:710253..710900 | TCONS_00055421-exon-scaffold_253-1510915933:710253..710900 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1575043694:710253..710900 | TCONS_00055421-exon-scaffold_253-1575043694:710253..710900 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1491911889:713766..714645 | TCONS_00055421-exon-scaffold_253-1491911889:713766..714645 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1510915933:713766..714645 | TCONS_00055421-exon-scaffold_253-1510915933:713766..714645 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1575043694:713766..714645 | TCONS_00055421-exon-scaffold_253-1575043694:713766..714645 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1491911889:716063..716181 | TCONS_00055421-exon-scaffold_253-1491911889:716063..716181 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1510915933:716063..716181 | TCONS_00055421-exon-scaffold_253-1510915933:716063..716181 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1575043694:716063..716181 | TCONS_00055421-exon-scaffold_253-1575043694:716063..716181 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1491911889:716441..716646 | TCONS_00055421-exon-scaffold_253-1491911889:716441..716646 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1510915933:716441..716646 | TCONS_00055421-exon-scaffold_253-1510915933:716441..716646 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1575043694:716441..716646 | TCONS_00055421-exon-scaffold_253-1575043694:716441..716646 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1491911889:717571..717807 | TCONS_00055421-exon-scaffold_253-1491911889:717571..717807 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1510915933:717571..717807 | TCONS_00055421-exon-scaffold_253-1510915933:717571..717807 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1575043694:717571..717807 | TCONS_00055421-exon-scaffold_253-1575043694:717571..717807 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1491911889:718401..719063 | TCONS_00055421-exon-scaffold_253-1491911889:718401..719063 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1510915933:718401..719063 | TCONS_00055421-exon-scaffold_253-1510915933:718401..719063 | Clytia hemisphaerica | exon |
| TCONS_00055421-exon-scaffold_253-1575043694:718401..719063 | TCONS_00055421-exon-scaffold_253-1575043694:718401..719063 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:710253..719063 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00055421 vs. Swiss-Prot (Human)
Match: CR3L1 (Cyclic AMP-responsive element-binding protein 3-like protein 1 OS=Homo sapiens GN=CREB3L1 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.810e-30 Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 1
Query: 1651 PHERQ----PFYLSEEEKRTLIMEGLPVPQGLPLNKSEERALKKVRRKIKNKISAQESRRKKKEYMESLEKKVDCYASENSILKKKVGSLEVANRSLIMQVQKLQALVTAKI 1974
PH+ Q P L+EEEKRTLI EG P+P LPL K+EE+ALK+VRRKIKNKISAQESRRKKKEY+E LEKKV+ + SEN+ L KKV +LE ANR+L+ Q+QKLQ LVT KI
Sbjct: 250 PHKLQGTSGPLLLTEEEKRTLIAEGYPIPTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANRTLLQQLQKLQTLVTNKI 361
The following BLAST results are available for this feature:
|
