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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055355 ID=TCONS_00055355|Name=TCONS_00055355|organism=Clytia hemisphaerica|type=transcript|length=2105bp
GGAAATTTATATTtacttttgcttttgtttagaTTTTAAGAACAATTAAT
ACAAAGCTTCCGTCGGAATCAGCGATCTGTAAGAGATGATAACACTACAA
TTCATGTCTCACTATGTATGTAACTTGACACTTTGACAGAATCACTGACA
AAGCGCAATTTTGATTTAATTCATCGTTTGCATGTGAACAATAGTCCAAT
CAATCGTGTATGCTGTTTAAATTCTCGAATTCCTTGATTACCGGTTGATA
TAAAAAGATCATGTCTGAAAGGCGTTTCAAATCAGAAGAGAAGTCTGCAG
TCAACAGTAAGTTGTTGGGGCAATCCTATGGTACATTATTCCAACCAGGA
TACGTTCGACAAATCAGCAGAATGTCTTGGATCAAATCACTATGGAAAAG
GGAGAAATTATTAATCTTCATCGTACTTGCTGTTTTATTGGGGTTATTGG
TTGGTCTCTTGATCAACAAACCAGTTCAGGAACTTGAAGAACCAGCGAAA
GGAAATGTTTTACTTCTAGTTGGCTTTCCTGGTGAAATCCTTATGCGCAT
GCTTAAAATGTTGATTCTACCGCTTATCATGACCAGCTTGATTGTTGGAT
TAGCTGATCTTGATCAAAGGTCTTCAGGACGTTTAGGTCGAAGAGCTGTT
TTGTATTACATGTTCACAACGGGAGTTGCCGTGTTGCTTGGAATCATCCT
GGTTGTCTCTATCAAACCTGGTAGTTATGGTGGTGATAAAGAATTCAATA
AAGATGCAGACCAACCCAAAACACGAACCATGGATACAATCCTTGATCTT
TTACGCAATATGTTCCCTGAGAACATCGTTCAAGCTTGTATCGAACAAGC
AGCTACCAGAGCTGAGGAGATCACCATTAGAACTGACCGAGTTTACTTTC
CTATTATAAACGGTACGGAAATGTCAGGGACCATCGAAGCCTACAACTCC
ACTCACAATGTCTCTATTACCAAGAAAACGGTACTTATCTCTGGTAAAAC
AACTTATCGATCAGGAACCAACGTCCTTGGTGTCGTTGTCTTTTCCATCG
CTATTGGTCTTCTTCTCGGTAAAATGGGAACGCAAGCTCATTCCTTCATT
CAATGGATCAAGATATTTAACGAATTGATCATGAAATTGGTTCAGTATGT
CATGTGGTATTCACCTATCGGTATTTGGAGTCTGGTTACCAACAAGTTCG
CCTCTATGGATGACATCTCTGGCACCTTTCAAGGACTGGCATATTACATG
GCGACGGTTATTTCAGGTTTAGTCGTCCACTCGTTCATCGTTCTTCCGTT
AACTTATTTCGTATTGACGCGGCGTAACCCGTTCTCCTTCATCAAAGGGA
CCGCTCAAGCCCTCTTAACCGCGTTCGGAACCAGTTCCAGTTCCGCCACA
TTACCGGTGACTTTCAAATGTCTTGAAGATAACAACGGTCTTGATAAACG
GGTGACTCGCTTTGTTTTACCCATCGGAGCTACTATCAATATGGATGGTA
CGGCTCTTTATGAAGCAGTCGCTGCAATCTTCATCGCTCAATCGACTGGT
ATGAGCTTGAATATTGGACAATACATCGCTATCAGTCTAACCGCTACACT
AGCCTCGATCGGTGCAGCAGGAATTCCCCAGGCTGGTTTAGTGACAATGT
TGATGGTTTTACAAACCGTGGGTTTACCAGAAGAAGCTGTCACTCTTATC
ATTTCAGTGGATTGGTTCTTGGATCGTATTCGCACTACAGTGAATGTACT
TGGTGATTGCATCGGTGCTGGCATTGTGGCTCATCTCTCAGAAGGCGATC
TCGAGAAACCTTTAGAGAACAGttatgaaaatgaaatcaatATTGTAGAA
GATGTTATTCGCAATGgatcaaaaacaagttatgATATTCAAACCAAAGA
ACATAGAAATGCAAGCACTACAAGCTTCTGAATAACTTGCTTAATGGTTT
TGGAACTGTATGCCAATttgtaaatatcaaatttataatATTATAAGCAT
AATtcaatcttgtaaaaaaaacttattatCATGAGAGTTTGTGTTGTTGA
TAGCATGGGAGGGATCTTTCTTCATAATCTGAACTTCACTCTCTTTCCTT
TTTAT Run BLAST on NCBI protein sequence of Amino-acid transporter protein >TCONS_00055355-protein ID=TCONS_00055355-protein|Name=Amino-acid transporter protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
MSERRFKSEEKSAVNSKLLGQSYGTLFQPGYVRQISRMSWIKSLWKREKL
LIFIVLAVLLGLLVGLLINKPVQELEEPAKGNVLLLVGFPGEILMRMLKM
LILPLIMTSLIVGLADLDQRSSGRLGRRAVLYYMFTTGVAVLLGIILVVS
IKPGSYGGDKEFNKDADQPKTRTMDTILDLLRNMFPENIVQACIEQAATR
AEEITIRTDRVYFPIINGTEMSGTIEAYNSTHNVSITKKTVLISGKTTYR
SGTNVLGVVVFSIAIGLLLGKMGTQAHSFIQWIKIFNELIMKLVQYVMWY
SPIGIWSLVTNKFASMDDISGTFQGLAYYMATVISGLVVHSFIVLPLTYF
VLTRRNPFSFIKGTAQALLTAFGTSSSSATLPVTFKCLEDNNGLDKRVTR
FVLPIGATINMDGTALYEAVAAIFIAQSTGMSLNIGQYIAISLTATLASI
GAAGIPQAGLVTMLMVLQTVGLPEEAVTLIISVDWFLDRIRTTVNVLGDC
IGAGIVAHLSEGDLEKPLENSYENEINIVEDVIRNGSKTSYDIQTKEHRN
ASTTSF Run BLAST on NCBI transcript from alignment at scaffold_253:631381..633951+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055355 ID=TCONS_00055355|Name=TCONS_00055355|organism=Clytia hemisphaerica|type=transcript|length=2571bp|location=Sequence derived from alignment at scaffold_253:631381..633951+ (Clytia hemisphaerica)
GGAAATTTATATTtacttttgcttttgtttagaTTTTAAGAACAATTAAT
ACAAAGCTTCCGTCGGAATCAGCGATCTGTAAGAGATGATAACACTACAA
TTCATGTCTCACTATGTATGTAACTTGACACTTTGACAGAATCACTGACA
AAGCGCAATTTTGGTTTGTAAAAActtaggaaatttttttcattcgtTTG
TATACCTATGAGAAGTCTCATATGGATTTCATTTGCAGTTatcgaaatat
ttctaaaatgcTTTGTTATTTGATTGGAATTTAATACAATCTTTAGTTAC
TAAGGAATGTCTTGAAAATGAGCCAGCATTTTTTTGCACCTGAGTGACTA
ATTTCTATTTACCTTTTTAGTTTCCATTCTACTCAGCCTTTTTTGACACC
ACCACTTGACAGAGGTCTAGGTTCCAGGTTGTATAAACCAATAATGTTAT
TTTAACGAGCTTATTCATTTCATCTTCGACGTATATTTGCGTAATTTATC
aagagaaaaaacaacaaaaaatcccCTGGCTTGTTGAAACACGTCCTTTG
TTTTCTTAGAAAGTCAGCATTTTTATCATCAAAATGTGAACTGaaagttc
aaaaaaaactttcttttgtaTTATTATAGATTTAATTCATCGTTTGCATG
TGAACAATAGTCCAATCAATCGTGTATGCTGTTTAAATTCTCGAATTCCT
TGATTACCGGTTGATATAAAAAGATCATGTCTGAAAGGCGTTTCAAATCA
GAAGAGAAGTCTGCAGTCAACAGTAAGTTGTTGGGGCAATCCTATGGTAC
ATTATTCCAACCAGGATACGTTCGACAAATCAGCAGAATGTCTTGGATCA
AATCACTATGGAAAAGGGAGAAATTATTAATCTTCATCGTACTTGCTGTT
TTATTGGGGTTATTGGTTGGTCTCTTGATCAACAAACCAGTTCAGGAACT
TGAAGAACCAGCGAAAGGAAATGTTTTACTTCTAGTTGGCTTTCCTGGTG
AAATCCTTATGCGCATGCTTAAAATGTTGATTCTACCGCTTATCATGACC
AGCTTGATTGTTGGATTAGCTGATCTTGATCAAAGGTCTTCAGGACGTTT
AGGTCGAAGAGCTGTTTTGTATTACATGTTCACAACGGGAGTTGCCGTGT
TGCTTGGAATCATCCTGGTTGTCTCTATCAAACCTGGTAGTTATGGTGGT
GATAAAGAATTCAATAAAGATGCAGACCAACCCAAAACACGAACCATGGA
TACAATCCTTGATCTTTTACGCAATATGTTCCCTGAGAACATCGTTCAAG
CTTGTATCGAACAAGCAGCTACCAGAGCTGAGGAGATCACCATTAGAACT
GACCGAGTTTACTTTCCTATTATAAACGGTACGGAAATGTCAGGGACCAT
CGAAGCCTACAACTCCACTCACAATGTCTCTATTACCAAGAAAACGGTAC
TTATCTCTGGTAAAACAACTTATCGATCAGGAACCAACGTCCTTGGTGTC
GTTGTCTTTTCCATCGCTATTGGTCTTCTTCTCGGTAAAATGGGAACGCA
AGCTCATTCCTTCATTCAATGGATCAAGATATTTAACGAATTGATCATGA
AATTGGTTCAGTATGTCATGTGGTATTCACCTATCGGTATTTGGAGTCTG
GTTACCAACAAGTTCGCCTCTATGGATGACATCTCTGGCACCTTTCAAGG
ACTGGCATATTACATGGCGACGGTTATTTCAGGTTTAGTCGTCCACTCGT
TCATCGTTCTTCCGTTAACTTATTTCGTATTGACGCGGCGTAACCCGTTC
TCCTTCATCAAAGGGACCGCTCAAGCCCTCTTAACCGCGTTCGGAACCAG
TTCCAGTTCCGCCACATTACCGGTGACTTTCAAATGTCTTGAAGATAACA
ACGGTCTTGATAAACGGGTGACTCGCTTTGTTTTACCCATCGGAGCTACT
ATCAATATGGATGGTACGGCTCTTTATGAAGCAGTCGCTGCAATCTTCAT
CGCTCAATCGACTGGTATGAGCTTGAATATTGGACAATACATCGCTATCA
GTCTAACCGCTACACTAGCCTCGATCGGTGCAGCAGGAATTCCCCAGGCT
GGTTTAGTGACAATGTTGATGGTTTTACAAACCGTGGGTTTACCAGAAGA
AGCTGTCACTCTTATCATTTCAGTGGATTGGTTCTTGGATCGTATTCGCA
CTACAGTGAATGTACTTGGTGATTGCATCGGTGCTGGCATTGTGGCTCAT
CTCTCAGAAGGCGATCTCGAGAAACCTTTAGAGAACAGttatgaaaatga
aatcaatATTGTAGAAGATGTTATTCGCAATGgatcaaaaacaagttatg
ATATTCAAACCAAAGAACATAGAAATGCAAGCACTACAAGCTTCTGAATA
ACTTGCTTAATGGTTTTGGAACTGTATGCCAATttgtaaatatcaaattt
ataatATTATAAGCATAATtcaatcttgtaaaaaaaacttattatCATGA
GAGTTTGTGTTGTTGATAGCATGGGAGGGATCTTTCTTCATAATCTGAAC
TTCACTCTCTTTCCTTTTTAT Coding sequence (CDS) from alignment at scaffold_253:631381..633951+ >TCONS_00055355 ID=TCONS_00055355|Name=TCONS_00055355|organism=Clytia hemisphaerica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_253:631381..633951+ (Clytia hemisphaerica)
ATGTCTGAAAGGCGTTTCAAATCAGAAGAGAAGTCTGCAGTCAACAGTAA
GTTGTTGGGGCAATCCTATGGTACATTATTCCAACCAGGATACGTTCGAC
AAATCAGCAGAATGTCTTGGATCAAATCACTATGGAAAAGGGAGAAATTA
TTAATCTTCATCGTACTTGCTGTTTTATTGGGGTTATTGGTTGGTCTCTT
GATCAACAAACCAGTTCAGGAACTTGAAGAACCAGCGAAAGGAAATGTTT
TACTTCTAGTTGGCTTTCCTGGTGAAATCCTTATGCGCATGCTTAAAATG
TTGATTCTACCGCTTATCATGACCAGCTTGATTGTTGGATTAGCTGATCT
TGATCAAAGGTCTTCAGGACGTTTAGGTCGAAGAGCTGTTTTGTATTACA
TGTTCACAACGGGAGTTGCCGTGTTGCTTGGAATCATCCTGGTTGTCTCT
ATCAAACCTGGTAGTTATGGTGGTGATAAAGAATTCAATAAAGATGCAGA
CCAACCCAAAACACGAACCATGGATACAATCCTTGATCTTTTACGCAATA
TGTTCCCTGAGAACATCGTTCAAGCTTGTATCGAACAAGCAGCTACCAGA
GCTGAGGAGATCACCATTAGAACTGACCGAGTTTACTTTCCTATTATAAA
CGGTACGGAAATGTCAGGGACCATCGAAGCCTACAACTCCACTCACAATG
TCTCTATTACCAAGAAAACGGTACTTATCTCTGGTAAAACAACTTATCGA
TCAGGAACCAACGTCCTTGGTGTCGTTGTCTTTTCCATCGCTATTGGTCT
TCTTCTCGGTAAAATGGGAACGCAAGCTCATTCCTTCATTCAATGGATCA
AGATATTTAACGAATTGATCATGAAATTGGTTCAGTATGTCATGTGGTAT
TCACCTATCGGTATTTGGAGTCTGGTTACCAACAAGTTCGCCTCTATGGA
TGACATCTCTGGCACCTTTCAAGGACTGGCATATTACATGGCGACGGTTA
TTTCAGGTTTAGTCGTCCACTCGTTCATCGTTCTTCCGTTAACTTATTTC
GTATTGACGCGGCGTAACCCGTTCTCCTTCATCAAAGGGACCGCTCAAGC
CCTCTTAACCGCGTTCGGAACCAGTTCCAGTTCCGCCACATTACCGGTGA
CTTTCAAATGTCTTGAAGATAACAACGGTCTTGATAAACGGGTGACTCGC
TTTGTTTTACCCATCGGAGCTACTATCAATATGGATGGTACGGCTCTTTA
TGAAGCAGTCGCTGCAATCTTCATCGCTCAATCGACTGGTATGAGCTTGA
ATATTGGACAATACATCGCTATCAGTCTAACCGCTACACTAGCCTCGATC
GGTGCAGCAGGAATTCCCCAGGCTGGTTTAGTGACAATGTTGATGGTTTT
ACAAACCGTGGGTTTACCAGAAGAAGCTGTCACTCTTATCATTTCAGTGG
ATTGGTTCTTGGATCGTATTCGCACTACAGTGAATGTACTTGGTGATTGC
ATCGGTGCTGGCATTGTGGCTCATCTCTCAGAAGGCGATCTCGAGAAACC
TTTAGAGAACAGttatgaaaatgaaatcaatATTGTAGAAGATGTTATTC
GCAATGgatcaaaaacaagttatgATATTCAAACCAAAGAACATAGAAAT
GCAAGCACTACAAGCTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055355-exon-scaffold_253-1491911889:631381..631543 | TCONS_00055355-exon-scaffold_253-1491911889:631381..631543 | Clytia hemisphaerica | exon |
| TCONS_00055355-exon-scaffold_253-1510915933:631381..631543 | TCONS_00055355-exon-scaffold_253-1510915933:631381..631543 | Clytia hemisphaerica | exon |
| TCONS_00055355-exon-scaffold_253-1575043694:631381..631543 | TCONS_00055355-exon-scaffold_253-1575043694:631381..631543 | Clytia hemisphaerica | exon |
| TCONS_00055355-exon-scaffold_253-1491911889:632010..633951 | TCONS_00055355-exon-scaffold_253-1491911889:632010..633951 | Clytia hemisphaerica | exon |
| TCONS_00055355-exon-scaffold_253-1510915933:632010..633951 | TCONS_00055355-exon-scaffold_253-1510915933:632010..633951 | Clytia hemisphaerica | exon |
| TCONS_00055355-exon-scaffold_253-1575043694:632010..633951 | TCONS_00055355-exon-scaffold_253-1575043694:632010..633951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:631381..633951 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001991 | Na-dicarboxylate_symporter |
| IPR018107 | Na-dicarboxylate_symporter_CS |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015293 | symporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0015293 |
symporter activity |
Blast
BLAST of TCONS_00055355 vs. Swiss-Prot (Human)
Match: EAA2 (Excitatory amino acid transporter 2 OS=Homo sapiens GN=SLC1A2 PE=1 SV=2) HSP 1 Score: 446.817 bits (1148), Expect = 7.648e-148 Identity = 238/480 (49.58%), Postives = 330/480 (68.75%), Query Frame = 3
Query: 480 ELEEPAKGNVLLLVGFPGEILMRMLKMLILPLIMTSLIVGLADLDQRSSGRLGRRAVLYYMFTTGVAXXXXXXXXXXXKPGSYGGDKEFNKDADQPKTRTMDTILDLLRNMFPENIVQACIEQAATRAEEITIRTDRVYFPIINGTEMSGTIEAYNSTHNVSITKKTVLISGKTTYRSGTNVLGVVVFSIAIGLLLGKMGTQAHSFIQWIKIFNELIMKLVQYVMWYSPIGIWSLVTNKFASMDDISGTFQGLAYYMATVISGLVVHSFIVLPLTYFVLTRRNPFSFIKGTAQALLTAFGTSSSSATLPVTFKCLEDNNGLDKRVTRFVLPIGATINMDGTALYEAVAAIFIAQSTGMSLNIGQYIAISLTATLASIGAAGIPQAGLVTMLMVLQTVGLPEEAVTLIISVDWFLDRIRTTVNVLGDCIGAGIVAHLSEGDLEKPLENSYENEINIVEDVIRNGSKTSYDIQTKEHRNAST 1919
L P +V++L+ FPG+ILMRMLKMLILPLI++SLI GL+ LD ++SGRLG RA++YYM TT +A +LG+ILV++I PG+ K+ + ++D LDL+RN+FPEN+VQAC +Q T +++ + P S + N T + ++I ++ G NVLG++ F IA G+ +GKMG QA + + I NE++MKLV +MWYSP+GI L+ K ++ D+ + L YM TVI GL++H I LPL YFV+TR+NPFSF G QA +TA GT+SS+ TLPVTF+CLE+N G+DKRVTRFVLP+GATINMDGTALYEAVAAIFIAQ G+ L+ GQ + +SLTATLAS+GAA IP AGLVTML++L VGLP E ++L+++VDW LDR+RT+VNV+GD GAGIV HLS+ +L+ + +++ + ED+ +++ YD K HR +++
Sbjct: 65 RLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPP----PDEEANATSAVVSLLNETVTEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELD-----TIDSQHRVHEDIEMTKTQSIYD-DMKNHRESNS 534
The following BLAST results are available for this feature:
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