Amino-acid transporter protein (polypeptide) - C. hemisphaerica

Overview


Name	Amino-acid transporter protein
Unique Name	TCONS_00055355-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	556

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055355-protein ID=TCONS_00055355-protein|Name=Amino-acid transporter protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
MSERRFKSEEKSAVNSKLLGQSYGTLFQPGYVRQISRMSWIKSLWKREKL
LIFIVLAVLLGLLVGLLINKPVQELEEPAKGNVLLLVGFPGEILMRMLKM
LILPLIMTSLIVGLADLDQRSSGRLGRRAVLYYMFTTGVAVLLGIILVVS
IKPGSYGGDKEFNKDADQPKTRTMDTILDLLRNMFPENIVQACIEQAATR
AEEITIRTDRVYFPIINGTEMSGTIEAYNSTHNVSITKKTVLISGKTTYR
SGTNVLGVVVFSIAIGLLLGKMGTQAHSFIQWIKIFNELIMKLVQYVMWY
SPIGIWSLVTNKFASMDDISGTFQGLAYYMATVISGLVVHSFIVLPLTYF
VLTRRNPFSFIKGTAQALLTAFGTSSSSATLPVTFKCLEDNNGLDKRVTR
FVLPIGATINMDGTALYEAVAAIFIAQSTGMSLNIGQYIAISLTATLASI
GAAGIPQAGLVTMLMVLQTVGLPEEAVTLIISVDWFLDRIRTTVNVLGDC
IGAGIVAHLSEGDLEKPLENSYENEINIVEDVIRNGSKTSYDIQTKEHRN
ASTTSF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034872	XLOC_034872	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055355	TCONS_00055355	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001991	Na-dicarboxylate_symporter
IPR018107	Na-dicarboxylate_symporter_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0015293	symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015293	symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001991	Sodium:dicarboxylate symporter	PRINTS	PR00173	EDTRNSPORT	coord: 250..272 score: 49.47 coord: 401..427 score: 89.39 coord: 436..455 score: 68.92 coord: 126..151 score: 54.99 coord: 97..117 score: 63.45 coord: 334..353 score: 52.43 coord: 297..316 score: 43.65 coord: 48..68 score: 33.72 coord: 463..483 score: 51.99
IPR001991	Sodium:dicarboxylate symporter	GENE3D	1.10.3860.10		coord: 39..515 e-value: 1.3E-164 score: 547.4
IPR001991	Sodium:dicarboxylate symporter	PFAM	PF00375	SDF	coord: 50..508 e-value: 2.5E-136 score: 454.7
IPR001991	Sodium:dicarboxylate symporter	SUPERFAMILY	118215	Proton glutamate symport protein	coord: 50..193 coord: 251..509
IPR018107	Sodium:dicarboxylate symporter, conserved site	PROSITE	PS00714	NA_DICARBOXYL_SYMP_2	coord: 404..427
IPR018107	Sodium:dicarboxylate symporter, conserved site	PROSITE	PS00713	NA_DICARBOXYL_SYMP_1	coord: 90..104

Blast

[Close]

BLAST of Amino-acid transporter protein vs. Swiss-Prot (Human)
Match: EAA2 (Excitatory amino acid transporter 2 OS=Homo sapiens GN=SLC1A2 PE=1 SV=2)

HSP 1 Score: 467.233 bits (1201), Expect = 1.138e-159
Identity = 246/504 (48.81%), Postives = 341/504 (67.66%), Query Frame = 0

Query:   50 LLIFIVLAVLLGLLVGLLINKPVQELEEPAKGNVLLLVGFPGEILMRMLKMLILPLIMTSLIVGLADLDQRSSGRLGRRAVLYYMFTTGVAVLLGIILVVSIKPGSYGGDKEFNKDADQPKTRTMDTILDLLRNMFPENIVQACIEQAATRAEEITIRTDRVYFPIINGTEMSGTIEAYNSTHNVSITKKTVLISGKTTYRSGTNVLGVVVFSIAIGLLLGKMGTQAHSFIQWIKIFNELIMKLVQYVMWYSPIGIWSLVTNKFASMDDISGTFQGLAYYMATVISGLVVHSFIVLPLTYFVLTRRNPFSFIKGTAQALLTAFGTSSSSATLPVTFKCLEDNNGLDKRVTRFVLPIGATINMDGTALYEAVAAIFIAQSTGMSLNIGQYIAISLTATLASIGAAGIPQAGLVTMLMVLQTVGLPEEAVTLIISVDWFLDRIRTTVNVLGDCIGAGIVAHLSEGDLEKPLENSYENEINIVEDVIRNGSKTSYDIQTKEHRNAST 553
            LL   V  V+LG + G L+      L  P   +V++L+ FPG+ILMRMLKMLILPLI++SLI GL+ LD ++SGRLG RA++YYM TT +A +LG+ILV++I PG+    K+        +  ++D  LDL+RN+FPEN+VQAC +Q  T  +++ +       P       S  +   N T      +  ++I     ++ G NVLG++ F IA G+ +GKMG QA   + +  I NE++MKLV  +MWYSP+GI  L+  K  ++ D+    + L  YM TVI GL++H  I LPL YFV+TR+NPFSF  G  QA +TA GT+SS+ TLPVTF+CLE+N G+DKRVTRFVLP+GATINMDGTALYEAVAAIFIAQ  G+ L+ GQ + +SLTATLAS+GAA IP AGLVTML++L  VGLP E ++L+++VDW LDR+RT+VNV+GD  GAGIV HLS+ +L+     + +++  + ED+    +++ YD   K HR +++
Sbjct:   46 LLTLTVFGVILGAVCGGLL-----RLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPP----PDEEANATSAVVSLLNETVTEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELD-----TIDSQHRVHEDIEMTKTQSIYD-DMKNHRESNS 534

The following BLAST results are available for this feature:

BLAST of Amino-acid transporter protein vs. Swiss-Prot (Human)

BLAST of Amino-acid transporter protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EAA2	1.138e-159	48.81	Excitatory amino acid transporter 2 OS=Homo sapien...	[more]

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Amino-acid transporter protein (polypeptide) - C. hemisphaerica