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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055212 ID=TCONS_00055212|Name=TCONS_00055212|organism=Clytia hemisphaerica|type=transcript|length=927bp
CCGAGTCTTTCTCCATATATCAGTCCTTCTTCATCAAAGGCTTACACTTC
TTCACCCTCCATACACCCTTCTTCATCTCCCATCCAACCATCACCCTTCC
CCTCTACTACTTCATCTCAAGAAGTCCTCAACGAATCAAGCTCAACTGAC
CATTTTGATGTCTTATCATCGCATTATATGATGTCTTCAACAACATTGAG
CCCAGGTAAATTACCAGCACAAAAGGATGAAGGATTTTTGAGAACACCAG
TAGGAATTTCAGTGATTGCTGTTTTAGGAGTAATCATTCTCGCCCTGAGC
GCTTTCATTGTGAAGAAAAAGATGGTTGCTACCTCCTCACATTTGATGAA
GAAAACTTTAGAAGTTGAaggaaatgttgaaaaaggAGTTGACAACATGG
CCATGGAAGTGATCAGAAACTGATCATGAATAACGGTTGAGGATTCATGT
CTCATAGAAAAAATCCTCTTATTAATTAAGAAACGTATTAGCATTTAATC
TACTGCACTTATATTTAGGTTTTTAACCCTTAGACTCCAtgagacgcgtt
ttcgcgtcctgaaacagccaaaataccaagtcccaaaggttgggtcccag
gtccctaggacttgatttaaaggggcataaaccgaatgctttttgaaaga
gtacaaaattaccattccaatggtaccaaaacgagtgtctaaatcaaaag
ctacaagcttttacgccattttgaattttgaagttttaaaaaaaaaatca
ttgaaatttttcaactttttcaaaactactgcgcgctcaaagggttaact
aaattttttaaaatttttttcgaagactccaaactgctcaaaatgactga
aaatgacaaataggagtgatttgaagttgttttgaccataaaaaattttt
atcaggggtctcattaacccttagacN Run BLAST on NCBI transcript from alignment at scaffold_251:205157..208962- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055212 ID=TCONS_00055212|Name=TCONS_00055212|organism=Clytia hemisphaerica|type=transcript|length=3806bp|location=Sequence derived from alignment at scaffold_251:205157..208962- (Clytia hemisphaerica)
CCGAGTCTTTCTCCATATATCAGTCCTTCTTCATCAAAGGCTTACACTTC
TTCACCCTCCATACACCCTTCTTCATCTCCCATCCAACCATCACCCTTCC
CCTCTACTACTTCATCTCAAGAAGTCCTCAACGAATCAAGCTCAACTGAC
CATTTTGATGTCTTATCATCGCATTATATGATGTCTTCAACAACATTGAG
CCCAGGTAATATAAACGATTGCAGAAAAGATTACACGTTTTTTTTTTTTT
AACATGAGGCTCAGAATGCCTAAAAACTAAGAAACGTCTAAGAAACATGC
TGAGGCTGAGAATGAGAAAATAGCATTTTTTAATTCGTTTTTTTTTTAAG
AACTTTCCAATCAAGGCTCCAGAAATATACATACATAACAGTTACAAACA
CTTGAGAAAGTCAGAAAATTAATATAGTAGATAGGAAAGTACCGTAGATT
AGTCAATTAGACTATTATATTATCGACATGCGTCCTTTAAGCTTGACAAA
GTTTAGAAACATGTAAGAAACATTTAAGGCTAAAAAGGCCGATTTCTTAA
GAAACATTGAGGCTGCTTGGTAGAACTAGTTTCTTAAAAAAAAAAACGTG
TATGCAAAAATTTTGTTGAAAAGATTTACACGTTCTTTTATAAGAAAGAA
CTATGGAAGAACATAATGCCTTGATCCCTGAAATCGAATTAAAAGCTCAT
TAAGGCTTTATAGGCTCTAAAACACCCAATTTATTTAGGCGATTGTACTC
CGCTGGGTGGGTATATAAGTTTTAGCAACTTGGTCTAAAGTTTGAAAATT
TTGGTTAAAGTTTATGGAAATGGTTTCTCTAAGGGTGGCAAAAACGTCAA
AAATTTGACAATATTTTAGAAATTCAGACTCTCCTAAGGGTCGATTTTCG
AAATTTGGCTAGGACATGGTGATATTAAAATACACCCTAAAAAATTTTAT
CTTATTAATTTTTTCAAGTCATAATTTCAGGGTCAAACGCCTAAAAGTTT
CACCATGATGTAAAAAGGTCCCTGAAAATTTTTGAAAAAAATCTTCTGAA
ATAGATTGGAAAAGCTAGTTTTCATTTTGAATAATTAACCAAGAGAAAAC
AACTTTGCGTTTCAATTTTTGAGTTTCTATCGTTCGAAGAGTATCTAATG
CGCTTTGTTTTTCCCTTTAGATGGTACATCTGAATTTTCATTAAGAATAA
AAGTGACAAAGCCAGGTGATGACAAAGAAATGCAAATGGTGCCAATTAAC
GAACCATTGGAATTCCAATTAGATATTATAGATGCTCCAAATACGGTCAA
AACTTCTCCACAAAATTGTTATGCAACCAGAGCTGATGGTTCTGGAAGAT
ATAATTTGATTACAGACAGGTTAGGCATTTCAAAAAGGGTATTTCAAATG
AGCAATCGTTCGTAATTATTCCAAAGAACTGATAGTATATATACAGGGTG
TCCCTAATTAAAGTATCGAGTCGAAACACAACTATGAGTAGAAAGTTTTA
TGTGCGTGTTCACAAAATTGTATTTTAAGCTCTCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGATGGAGAACGTTCTTATATTTTAGC
GATAACACACACAAACTTTTCTACTCAATCGCATGTTCAAACTCGATACT
TTAATTAGGGACACCCTGTAATGTCTCATCCCCAAAACAGGGCAACAAAA
ACATTTTATACCTTAAATCCTTCACCTTATAAACTAGATTTTTCATGGAT
TAAGTAAAATGTTTTAATCAGTAGAACAAAAATAGAACACAGATTTTCAT
GTTTTGATTGATTCAGAAATCTCGAGTGAGTAATTTTTTTTTCCCATGAT
GTGCCCTGTGCTGTGAATTTCACAATTCCCTCTCCAAAGAATAAAAAAGA
AATCTCTCTTGAAAACATAATATTATTACTGTTTTTTTCTTCCTACGAGT
CATCTTGTTCAAAGATTTAGCCACCCTAACCCTTTCCGTGCCCAAGGGGA
GAAAATGACAAAAGAATTGACGAAAATTTTAGAGGCGATGCAGTTGTTAC
GACGGGAGAAAATGAAAACAGTATTTTGAGCAGTCGATGGCATGTATATT
TGTCATAACCAGTTGTTGGCCACCTGGCCCAATTTCAAATATACTTGACA
TGGACCAATCAAAAAACTTCCGCAATGTCAAATATATGCCATCGGCTGCT
CAAAATGTTTTTGCGATGTCAAATGTACTGGATTTGGGTACGGAGAGGAC
TAAGGTCGGTTCTCAGAGGACCGGGCTTGTACCCCGATCAGCTCTCGGAA
CTCAGATCGACTTTACGTTATATTTTTTTTCAGATGTGAGGATGACGAGA
CAACTGCTATCACCTCCTCAAAAACTGCAATCCATCGGTTCTCATGGGAA
ATGTTAGCTTTCAGATATTTTGGAAACTCTAATGCAGTCATCATCGTATG
TGAAGTTTTGATTTGCAAAAATGAAGATTTTGCCGATTTAAGCGGAGAAT
GCAAAAGATGTGGTCAGACTTCAAAAAGAAAAAAAAGAGCTGTCAGTGAT
TCAATGGTTCTTGAGAAAACAACAATCTCCAGTCAACCTATTTTTATCAT
CAACCTTCCAGACAAGCCAGGTCAGAACTTTTGGTTTAGGTCCTTGTCAT
ACTGAATGATATGTCTCCCAATTTGGAGTCCAAGCTCTGGAGCTTTCTAG
TAAAAGAAATGTCTTCGACTGTCAACCTGGCAACAGAATCTACTCCAGCT
GCTTCCCGTAATGGTGTGATTCGGGGATTCTTTACGATTGATGAGCCCTT
GATATGTAAATATGATTAATGTAGATTTTCACTTATCGCAAATCTTACAC
AAATTTCATGACTGGCTGATATTTGCTAGATCCTCCTCTTGGCGGTATAA
AGCGGGATGAAACTTTGAGCTTTTAATATTTTAGGACAATTACCAGCACA
AAAGGATGAAGGATTTTTGAGAACACCAGTAGGAATTTCAGTGATTGCTG
TTTTAGGAGTAATCATTCTCGCCCTGAGCGCTTTCATTGTGAAGAAAAAG
ATGGTTGCTACCTCCTCACATTTGATGAAGAAAACTTTAGAAGTTGAAGG
AAATGTTGAAAAAGGAGTTGACAACATGGCCATGGAAGTGATCAGAAACT
GATCATGAATAACGGTTGAGGATTCATGTCTCATAGAAAAAATCCTCTTA
TTAATTAAGAAACGTATTAGCATTTAATCTACTGCACTTATATTTAGGTT
TTTAACCCTTAGACTCCATGAGACGCGTTTTCGCGTCCTGAAACAGCCAA
AATACCAAGTCCCAAAGGTTGGGTCCCAGGTCCCTAGGACTTGATTTAAA
GGGGCATAAACCGAATGCTTTTTGAAAGAGTACAAAATTACCATTCCAAT
GGTACCAAAACGAGTGTCTAAATCAAAAGCTACAAGCTTTTACGCCATTT
TGAATTTTGAAGTTTTAAAAAAAAAATCATTGAAATTTTTCAACTTTTTC
AAAACTACTGCGCGCTCAAAGGGTTAACTAAATTTTTTAAAATTTTTTTC
GAAGACTCCAAACTGCTCAAAATGACTGAAAATGACAAATAGGAGTGATT
TGAAGTTGTTTTGACCATAAAAAATTTTTATCAGGGGTCTCATTAACCCT
TAGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055212-exon-scaffold_251-1575043694:208755..208962 | TCONS_00055212-exon-scaffold_251-1575043694:208755..208962 | Clytia hemisphaerica | exon |
| TCONS_00055212-exon-scaffold_251-1575043694:205157..205875 | TCONS_00055212-exon-scaffold_251-1575043694:205157..205875 | Clytia hemisphaerica | exon |
| TCONS_00055212-exon-scaffold_251-1510915933:208755..208962 | TCONS_00055212-exon-scaffold_251-1510915933:208755..208962 | Clytia hemisphaerica | exon |
| TCONS_00055212-exon-scaffold_251-1510915933:205157..205875 | TCONS_00055212-exon-scaffold_251-1510915933:205157..205875 | Clytia hemisphaerica | exon |
| TCONS_00055212-exon-scaffold_251-1491911889:208755..208962 | TCONS_00055212-exon-scaffold_251-1491911889:208755..208962 | Clytia hemisphaerica | exon |
| TCONS_00055212-exon-scaffold_251-1491911889:205157..205875 | TCONS_00055212-exon-scaffold_251-1491911889:205157..205875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_251 | supercontig | scaffold_251:205157..208962 - |
Blast
The following BLAST results are available for this feature:
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