TCONS_00055179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055179
Unique NameTCONS_00055179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055179 ID=TCONS_00055179|Name=TCONS_00055179|organism=Clytia hemisphaerica|type=transcript|length=1244bp
tttcagtgataaaatatttttcaaaacaaatataaCTTATTTATATTGAA
AGAAGTGTAAATCATGGCAGTCCGTGCACGGTATGAAAACAGTAATGAAA
TTGGTGTTTATTCCAAACTGACAAACACATATTGTATGGTTGGGGTTGGC
GCATCACAGAATTTCTACAGTGTTTTTGAAGGGGAATTGGATGATGTCAT
TCCAGTCTTTCAAGCTTCTGTATCAGACTCTGCTATCGTAGGGCGCCTGA
CAGCTGgCAATCGTCATGGTCTCCTTGTACCAAGTACTACAACAGATCAA
gaaCTTCAACATATTCGAAACTCTCTACCTGACGGTGTGAAACTACAACG
CGTGGAGGAACGTCTTTCAGCGTTGGGGAATGTTGTTGCATGTAATGACT
ACGTCGCACTCGTTCATCCCGACCTCGACAGGGAAACTGAAGAGATTTTA
GCAGACACACTAAAAGTAGAAGTATTCCGTCAAACGATAGCAGAAAATTC
ACTGGTTGGAACTTATTGTAGTATTAGCAATCAAGGTGGCCTGGTACATC
CAAAAACGTCCATCGAAAATCAAGATGAAATATCTTCATTATTACAAATT
CCTTTAgttGCGGGTACAGTGAACCGAGGTAGTGAGGTGATCGGAGCCGG
TATGATAGTCAACGATTGGTGTTCGTTCTGTGGTTTGGATACAACTAGTA
CTGAGTTATCTGTCATCGAAAGTATCTTCAAGTTAGGCGATGCTCAACAA
TCGGCCATCACAACAACTATGAGAGCTGCCCTTATTGAGTCcaTGACGTA
AACGGCGTGGACGAACAATGCGAAGGTTCGGTTGGGAATGGATGTATATA
AAGAAAGGTGATTTGGGTATACAAACGTATAAAAATATATACTCTTAACA
CTCATAGTTATTCCAACCACCCCTTGTTTAACGACCAGAGTGTACCCTTC
AAAATCTAAATCCAATTCCCGATTTTAATCGATATATGATCCATAGCTAA
GcgattttctttagattttgtATTCATTTTAGCCTAATTGTACCAGGGAA
GTCAAATTATTTCTAATAACCGGGAAGGTCGGACTTTACAGGAACACCCA
AATCACAAAGTTGATGTATAAATTTGCTGAGCGGCAGAGAGAATTTTTCT
CGTGAGTTTTATAGGTTTAATTTGGTGAGGTGACATtttgttattgattt
ttttacGAAATTATTGTAGCTTTTTTGCAAACAATAAACGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_251:581490..592051+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055179 ID=TCONS_00055179|Name=TCONS_00055179|organism=Clytia hemisphaerica|type=transcript|length=10562bp|location=Sequence derived from alignment at scaffold_251:581490..592051+ (Clytia hemisphaerica)
tttcagtgataaaatatttttcaaaacaaatataaCTTATTTATATTGAA
AGAAGTGTAAATCATGGCAGTCCGTGCACGGTATGAAAACAGTAATGAAA
TTGGTGTTTATTCCAAACTGACAAACACATATTGTATGGTTGGGGTTGGC
GCATCACAGAATTTCTACAGGTGAGTAGTGTTTTTCACCTGTATTTTATA
TCTTTTAATGTGGGAACTAATGTTTGCGAAAACCTATTTCATGAGACtag
tttttttgttcattcagGTATAGCTCAAAGATAGTTAAAAATTTCTCAGT
ATCCAATTTTGATATATGCAAAGTTTAAATgcctaaagtctgtccagata
taattggcagtggaaacaagaatgcctgtaacttttgatagtcaaatata
attatggaaattttttttgcttgttttagagaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
tgccttgaaatttaacaaacttcttaacctaaggttgaactaccactggt
gtaaaaatgaatgtaatagcataagtagaaaaaaagctcaatttttacac
tcgcaaattaaaccgctaaaaatcgcgaatttttcaaccaaaaatacatt
caaatatagcgcttttgattctctaaaacaagcaaaaaaaatttccataa
ttatatttgactaccaaaagttacaggcattcttgtttccactgccaatt
atatctggacagactttagttattCTGTTTGTTTGaacattaaaatttaa
aaagtttcatctttcattcttaaaatttaaaaagtttcatcTTTCATTCT
ATAGTGTTTTTGAAGGGGAATTGGATGATGTCATTCCAGTCTTTCAAGCT
TCTGTATCAGACTCTGCTATCGTAGGGCGCCTGACAGCTGGTTAGTGATT
TACTAacttatttttttagttttctgcATACAGTATATTATTCACGTTTG
GATAAAGGAACTTCCATGTACTGAAGATTTTGAACAAAATACTTTGATCA
ACCAGGGACGTGGGTGCTACcacagggtactaacccatagggtaaCCCTG
AATTTCAGCAGGAATATTTGTCTTATATAATCACCACCTCTTTTTTCAAT
ACCCGGTACTAGCTTTTTTGAGAACAAAAAGGATTCATCTTTAGTGCCAG
GTAATCTCTACTTTTGGGACCCCCGCAAATTTTTTTCGTTCGCGGACGCA
AACCTGATTTAGCGGTCAAAGACCTAAATTAACGGTCaaagacctgaatt
aacggtcaaagacctgaattaacggtcaaagacctgaattaacggtCAAA
GACCTGAATTACTGGTCAaagacctgatttagcggccAAAGACCTTAatc
aacggccgaagacctgatttagcggccgAAGATCTGAATTAACGGTCAAA
GACCTGAATCAACGGCTGAAAACCTGATTTAACGAccgaagacctgattt
agcgATTCACCGGCCGAATACCTGATAGATAAGTTAGGGTCAGTTAAACT
AGCTTGAACCATTCGGCAAGGCATCAGGTGCTATGGTCCAGTGGTTAGTG
CAGTGGTATTGGAGACGAAAGATGAGTAGTTCGAGACCAGTTATTGGcat
taattttcattatttttagtttaaaatcttttaacttaatttgttttcaa
tactATTTCCCATTGaaacgtcataaaaaaatcttgaatgaatttataaa
aaagctttataaCAAATTTCCACAATTCATTTTCTCCGGGTCTTTGgccg
ttaaaaaaaaattccaccacTGCATCAAGTCTTCGGTTTTCAATTCATGT
CTTcggccgctaaatcaggtctgcggccgctaaatcaggtctgcgACCGC
TAATTCAGGTCTGCGGCCGCTAATTCACGTCTGCGTCTGCtgacagaaaa
aaaatctgcggGACCCCCATCCCCTATTAAGAAGCCGGTTATCAAGAATA
ATAAGGGTACAGTACATAATACCTATTAATATTTTGAGACCCAAATTAGA
CACCACTTCCTGGCTATGGGTAAGTACCCAGCAGCTTTGTACCCTTTATC
GACTGGTGATTCCAGGATTTAGATCGGCAATTCATATTCCTTGATTAGGT
AATTCAAGATTTTCTACCTtattgaaaacttaaaaaatattcttcttgat
ttttttgcaggCAATCGTCATGGTCTCCTTGTACCAAGTACTACAACAGA
TCAAGTATGAaacttttatctttatttttcaacaacTTCTACGTTTATTC
TGCGTGCTCTAAGTTCTCATTAGAGAcaaatggtttgttttaaaTATCTA
TACTAACTCTAGTTAATaataagggctacatacactacacaatatattgc
tgaatgcgggcaatatattgaaaaggtgtccgcaatatattgtcagctag
atttgcaatattccaacaatatagggggattgtttacaaaatgaaaattc
ctttttataataacccgttacggtccgaaaactaaattgtcgaatattgc
tcaccaatatattgtgtacatgtttttttttataagcaagtgtatgcccc
ttggtcaggctcgtgtatgcttaagttctcaaagtatccaggcatagttt
atgcttattatatgcttNNNNNNNNNNNNNNNNagtttatgcttattata
tgcttaagaatcatgcttatgattcaccccaagccaagtttttaatgaaa
tttcagaaattttgtaaaaatttgttcagattttaggagcagtggaatgt
agctaaccgtggaatgtcttatttttacttgacctctaccaaaccttttt
aaacagataaaaacgaccacttgaaaaatatttcaggctgacataaTATG
CTCATgtgaattctgcaaatctgagccttcatatgcttattagcgttttg
cttataaaaaaaacatgtagtctaagtagccctatACTAATTGCAGTGTC
AAGATGAACTACAATAAATTTTCATGCAATTCTCTTTAAACTGCATTCAG
CCCAACTTTCAACTGTAATCGACAGACTGATACTTTCCATTTTTAAGGAG
TTAAAATGGACTCCACTTCTTTCAGATATCTTGCCATTATGacttatttt
cagatttttgataACTTCGAAAAACCCCTGTAAACGAACATTGTATCGTA
GAACGCGTATTTTACGGTCACTTTTTTGACCTACcaggaggtcctatgaa
ttcaCCTTTATTCGGTTCGTTCGTTCGTCACCAGCGACAATTTccctgaa
aaagatttttagggattttctcgagctctcattagtttttctgacgtttt
gtttattttaaatttaatgttttctgtTGATCagccaggtaggtccatca
aagtattactttttttctttttcaggaaCTTCAACATATTCGAAACTCTC
TACCTGACGGTGTGAAACTACAACGCGTGGAGGAACGTCTTTCAGCGTTG
GGGAATGTTGTTGCATGTAATGACTACGTCGCACTCGTTCATCCCGACCT
CGACAGGGTAAGGATCAAATTCGTATGCTAGAAAAAATGCGTGTTTCTGC
TGTTATAGCTATATAGGAACAGATGAAGTTGagtttttcgaagtttttaC
TCAATTTTATTGATATATTCTTATTGTTTTTTGATGAATatgttttgtta
aaaaaactttaaattattGCTTTTTGTACAGGACACTGAAGAGAATTTAg
gtttcgcgaaaataagtacccgcaaaattttgtaacacgcgaaatttaat
accattAAGGTATTAGGCACTTGAGAGTAACATTTTAAATCATCCATCGG
CTATTGTTTTTAAACAGGAAACTGAAGAGATTTTAGCAGACACACTAAAA
GTAGAAGTATTCCGTCAAACGATAGCAGAAAATTCACTGGTTGGAACTTA
TTGTAGTATTAGCAATCAAGGTGGCCTGGTAGGTTGAATATATGTCGTGT
TTTTGCAAGCGAATTTTCAAAGATGAATACAGAAACCAATTGTTTCATCT
TCTCCACAactcatagtgtgcagaggggtctgaacccccccattaatatt
tcatccccccctataaaggtatcccccctatttttaaaattttttgatcc
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccctataaagcctt
ccttgaaaaTTCGGatcccccccttaaaaaaggggggggttcATACTATG
CAACTGTTTCATGGTTTCTCCCAAGTTTCCTAAACACCCCAAGTTTCTGA
GACTAAATTAGTTTATTGTTCTACGGGTCTGATGGACCTAAAATCAAAac
ccaaaatcgaaaaaataataatattgactTGACAAAGCTGAAGGGGAGTG
ACTTTATAAGTTTATCTCCAGATATTGTTTCTAACTGAACAAGCTGAAAA
AGTGTAAATTCATTCCATAACTTAGATCGCTtagatgaatttaaaacatC
ACAAGGGAAATGACACGAAAGTGGCTCATCGATAAAGAGTGAAAAGTCTA
CTGCTTCAAAACGTCACAACTTTTTTAGATCTTATGACCTTCCGAcccta
aatttgaaaaaattatttttaccaaCCGAccaacaatatttttctgaaag
tctTCCCGTAGAACGATGAATTAAATTTGTCTCGCCTAAACATACCAAAA
CTACTTTGAGCTATAAACTAGGAAGAACTTTAGAGAAAAACCAGCATAAA
CgaaattgtttcaaaatacTTCCATTTTAAAGAACCGTAACTAATTGACT
TCCAGCTGATTAGTGGTCATTCTTAACCTCCACCCATccacggaaatacc
ccggttttagccaggagtggcaaatttaaactagacaaaagttgtataaa
atttgtcactactggcaaaaaccggggtctttccgtagaaagcattacgt
catgaatatcataaatACTATCCGTTACTTTAGCAGTTGTTTGTTTTAAA
ATGCTCACTAAAACCCTTCTCATTTCTATACACTTCAGGTACATCCAAAA
ACGTCCATCGAAAATCAAGATGAAATATCTTCATTATTACAAATTCCTTT
AgttgtgagttttttttttgttttttttttttgctttaattgCTACTATT
TCACTAGTTTCGCTGGAAAGATCgctgtctgtacacaaacccagtatcta
cggcttatttcaaaattcattgccgtagagggtctgttgtcattgtcttt
tctcatttgagatttttcaaaccgaccgctgcgatggagtgttggtgaga
gaggggagacgatgagagaaacgttgctatttataaatcatacttcatcg
cagaggtctccgtacgggaattctTTTAttaaacagacaatgcgcacaga
gtgtactacaaagcgataaacgtgatatacactctggtacagagtagaaA
GATCGTCGACTCGTTTAATTTTAATTCCAttggtaaaaaataaataattt
ttgtagACCAAtacaatagatcttatcggagtttttgattttttttttta
aagcgatgcattgtgggattgtttcgggtgTATTACAATAATAGAGTTCC
CTCGAAGAATTCCtgagagatttctattgtaatacccccgaaacaatccc
acaatgcatcgctttaaaaaaaaatcaaaaaccgataagatctattaaaA
AAGGTCAGTACAATTAGGTTCATTTTCatttaacaatattttgaatgttC
CTTCAACCTTTTTTCTTCATAGGCGGGTACAGTGAACCGAGGTAGTGAGG
TGATCGGAGCCGGTATGATAGTCAACGATTGGTGTTCGTTCTGTGGTTTG
GATACAACTAGTACTGAGTTATCTGTCATCGAAAGTATCTTCAAGTTAGG
CGATGCTCAACAATCGGCCATCACAACAACTATGAGAGCTGCCCTTATTG
AGTCGtaagtattattattattgtatgATTTTCCTAAACCCTTACAGAGC
ATTCTATGGGAAGTGTCAACCTCGAGGGAAACCAGTAGGTAAATTAAGAC
CTAGGGTCAGGTAAATTTTATTTGGTAATTGAACTTAAAAAGAACACGTT
GGACTTTGACTTTCTTCCCGGAAGATAAGTCTCAATTTGTCCAAAGCATT
CATAGGAAAACCTATGTATGACGTTATGCTTTCTAAAGGAAACACCTCAC
ACGTAAATAGTAGCAAAAAACAGGCGGCCGAAAAAAACACGAGAAAAAAA
TCCGGGGGGACTAAAAGGTAGAGGAAATTAGAGgaattgttttcaatttt
tcagtaGGAGGCCTACAAGGACACTATGGTCAAATTTCCCAGTCTCGTAA
TAGTTTCGAGATAACGTAACGGGTAGCATAAGAAGTAACTAAGGAGctta
ttattttatttcattatatcattttctttattttagcaTGACGTAAACGG
CGTGGACGAACAATGCGAAGGTTCGGTTGGGANTTCTTTTAttaaacaga
caatgcgcacagagtgtactacaaagcgataaacgtgagatacactctgg
tacagagtagaaAGATCGTCGACTCGTTTAATTTTAATTCCAttggtaaa
aaataaataatttttgtagACCAAtacaatagatcttatcggagtttttg
atttttttttttaaagcgatgcattgtgggattgtttcgggtgTATTACA
ATAATAGAGTTCCCTCGAAGAATTCCtgagagatttctattgtaataccc
ccgaaacaatcccacaatgcatcgctttaaaaaaaaatcaaaaaccgata
agatctattaaaAAAGGTCAGTACAATTAGGTTCATTTTCatttaacaat
attttgaatgttCCTTCAACCTTTTTTCTTCATAGGCGGGTACAGTGAAC
CGAGGTAGTGAGGTGATCGGAGCCGGTATGATAGTCAACGATTGGTGTTC
GTTCTGTGGTTTGGATACAACTAGTACTGAGTTATCTGTCATCGAAAGTA
TCTTCAAGTTAGGCGATGCTCAACAATCGGCCATCACAACAACTATGAGA
GCTGCCCTTATTGAGTCGtaagtattattattattgtatgATTTTCCTAA
ACCCTTACAGAGCATTCTATGGGAAGTGTCAACCTCGAGGGAAACCAGTA
GGTAAATTAAGACCTAGGGTCAGGTAGATTTTATTTGGTAATTGAACTTA
AAAAGAACACGTTGGACTTTGACTTTCTTCCCGGAAGATAAGTCTCAATT
TGTCCAAAGCATTCGCAGGAAAACCTATTTATGACGTGATGCTTTCTACA
TGAAACACCCCACACGTAAGTAATAGCAAACAAACACGAATTTTCAGGGG
gaacaaaattcttttttgaaatattaggGGGGACTTTCAGGAGGACGCTA
TGGCTATGGCTATGGCCAAACTTCCCAGTCTCGTAATAGTTTCGAGATAA
CATAACGGGTTGCGTAAGAAGTAACCAAGGAGcttattattttatttcat
tatatcattttctttattttagcaTGACGTAAACGGCGTGGACGAACAAT
GCGAAGGTTCGGTTGGGAATGGATGTATATAAAGAAAGGTGATTTGGGTA
TACAAACGTATAAAAATATATACTCTTAACACTCATAGTTATTCCAACCA
CCCCTTGTTTAACGACCAGAGTGTACCCTTCAAAATCTAAATCCAATTCC
CGATTTTAATCGATATATGATCCATAGCTAAGcgattttctttagatttt
gtATTCATTTTAGCCTAATTGTACCAGGGAAGTCAAATTATTTCTAATAA
CCGGGAAGGTCGGACTTTACAGGAACACCCAAATCACAAAGTTGATGTAT
AAATTTGCTGAGCGGCAGAGAGAATTTTTCTCGTGAGTTTTATAGGTTTA
ATTTGGTGAGGTGACATtttgttattgatttttttacGAAATTATTGTAG
CTTTTTTGCAAACAATAAACGAGATCTATatacaaattataaaaaaaata
cttttttctttcttctctaTATCTTGTCAGCATTTTAAAGCAATTAGTAG
CCTCGTGTTAGTATTGGTATCTTTTTGGTGACTACACGTTTTTCGTTTTA
TTAGAAcacagtttataagaacattgaggctgaaattcgtcgaaaaatta
agaacatgcccagcctcagtttgaaaaaaaataagaaactacaatttttt
cctattttcaagcagttagggatggattttctaaaatcaagagtcaaata
ttggccaaattttacgaattttaagtgctctttattttgcatgatgttGT
CTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAGGAGcttattattttatttcattatatcattttct
ttattttagcaTGACGTAAACGGCGTGGACGAACAATGCGAAGGTTCGGT
TGGGAATGGATGTATATAAAGAAAGGTGATTTGGGTATACAAACGTATAA
AAATATATACTCTTAACACTCATAGTTATTCCAACCACCCCTTGTTTAAC
GACCAGAGTGTACCCTTCAAAATCTAAATCCAATTCCCGATTTTAATCGA
TATATGATCCATAGCTAAGcgattttctttagattttgtATTCATTTTAG
CCTAATTGTACCAGGGAAGTCAAATTATTTCTAATAACCGGGAAGGTCGG
ACTTTACAGGAACACCCAAATCACAAAGTTGATGTATAAATTTGCTGAGC
GGCAGAGAGAATTTTTCTCGTGAGTTTTATAGGTTTAATTTGGTGAGGTG
ACATtttgttattgatttttttacGAAATTATTGTAGCTTTTTTGCAAAC
AATAAACGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034756XLOC_034756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055179-exon-scaffold_251-1491911889:581490..581659TCONS_00055179-exon-scaffold_251-1491911889:581490..581659Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:581490..581659TCONS_00055179-exon-scaffold_251-1510915933:581490..581659Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:581490..581659TCONS_00055179-exon-scaffold_251-1575043694:581490..581659Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:583094..583179TCONS_00055179-exon-scaffold_251-1491911889:583094..583179Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:583094..583179TCONS_00055179-exon-scaffold_251-1510915933:583094..583179Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:583094..583179TCONS_00055179-exon-scaffold_251-1575043694:583094..583179Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:584450..584493TCONS_00055179-exon-scaffold_251-1491911889:584450..584493Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:584450..584493TCONS_00055179-exon-scaffold_251-1510915933:584450..584493Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:584450..584493TCONS_00055179-exon-scaffold_251-1575043694:584450..584493Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:585665..585796TCONS_00055179-exon-scaffold_251-1491911889:585665..585796Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:585665..585796TCONS_00055179-exon-scaffold_251-1510915933:585665..585796Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:585665..585796TCONS_00055179-exon-scaffold_251-1575043694:585665..585796Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:586107..586217TCONS_00055179-exon-scaffold_251-1491911889:586107..586217Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:586107..586217TCONS_00055179-exon-scaffold_251-1510915933:586107..586217Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:586107..586217TCONS_00055179-exon-scaffold_251-1575043694:586107..586217Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:588078..588143TCONS_00055179-exon-scaffold_251-1491911889:588078..588143Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:588078..588143TCONS_00055179-exon-scaffold_251-1510915933:588078..588143Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:588078..588143TCONS_00055179-exon-scaffold_251-1575043694:588078..588143Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:589925..590106TCONS_00055179-exon-scaffold_251-1491911889:589925..590106Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:589925..590106TCONS_00055179-exon-scaffold_251-1510915933:589925..590106Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:589925..590106TCONS_00055179-exon-scaffold_251-1575043694:589925..590106Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:590562..590595TCONS_00055179-exon-scaffold_251-1491911889:590562..590595Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:590562..590595TCONS_00055179-exon-scaffold_251-1510915933:590562..590595Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:590562..590595TCONS_00055179-exon-scaffold_251-1575043694:590562..590595Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1491911889:591633..592051TCONS_00055179-exon-scaffold_251-1491911889:591633..592051Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1510915933:591633..592051TCONS_00055179-exon-scaffold_251-1510915933:591633..592051Clytia hemisphaericaexon
TCONS_00055179-exon-scaffold_251-1575043694:591633..592051TCONS_00055179-exon-scaffold_251-1575043694:591633..592051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_251supercontigscaffold_251:581490..592051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.6444	14.8746	12.6253	34.0032	8.19854	0.816922	12.1831	10.2068	5.16701	10.7027	6.88505	13.8065	13.879	18.0299	6.27684	13.1141	17.2922	13.1415	1.0467	8.8291	1.8744	12.5731	16.2497	5.85356	11.0368	15.1661	6.93183	6.98401	9.59983	5.82558
Blast
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BLAST of TCONS_00055179 vs. Swiss-Prot (Human)
Match: IF6 (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.887e-139
Identity = 186/245 (75.92%), Postives = 216/245 (88.16%), Query Frame = 1 
Query:   64 MAVRARYENSNEIGVYSKLTNTYCMVGVGASQNFYSVFEGELDDVIPVFQASVSDSAIVGRLTAGNRHGLLVPSTTTDQELQHIRNSLPDGVKLQRVEERLSALGNVVACNDYVALVHPDLDRETEEILADTLKVEVFRQTIAENSLVGTYCSISNQGGLVHPKTSIENQDEISSLLQIPLVAGTVNRGSEVIGAGMIVNDWCSFCGLDTTSTELSVIESIFKLGDAQQSAITTTMRAALIESMT 798
            MAVRA +EN+ EIG ++KLTNTYC+V +G S+NFYSVFEGEL D IPV  AS++   I+GR+  GNRHGLLVP+ TTDQELQHIRNSLPD V+++RVEERLSALGNV  CNDYVALVHPDLDRETEEILAD LKVEVFRQT+A+  LVG+YC  SNQGGLVHPKTSIE+QDE+SSLLQ+PLVAGTVNRGSEVI AGM+VNDWC+FCGLDTTSTELSV+ES+FKL +AQ S I T+MR +LI+S+T
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT 245
The following BLAST results are available for this feature:
BLAST of TCONS_00055179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF61.887e-13975.92Eukaryotic translation initiation factor 6 OS=Homo... [more]
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