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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055096 ID=TCONS_00055096|Name=TCONS_00055096|organism=Clytia hemisphaerica|type=transcript|length=395bp
GGGCTGTGCTTCATCCCTTCTCACCGTTTTTGCCATCTACCAAACTGTAC
GGTCAAAATATAAGAATTGATGCCAAATCAATAAATAAAGATGAAGCTGA
ACTCACTCTTAAGGAAAATAATATTGATCGTATAACCCACCTGTATGTGA
TCGACGATGATGGTGTCGAAGACGTTTTCAGTAATGGTTTTCGAATAAAG
AACTCCCAGGAAGAAGGTTGTATTACCGTCATTCTAAAAAACATTGATAG
AAAAAAGAAGTTCAAAGTTGCTGTATGTGGTATCGTGCGGGATGGAgaca
atgaaaaagaaatttcattgACTTGTGACAAAGAAATTGAACCAAATCAA
GATGTTAATGAGGCGCTTTTGTTGTCAATCACTCCACCAGGGGAA Run BLAST on NCBI transcript from alignment at scaffold_250:36313..40984+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055096 ID=TCONS_00055096|Name=TCONS_00055096|organism=Clytia hemisphaerica|type=transcript|length=4672bp|location=Sequence derived from alignment at scaffold_250:36313..40984+ (Clytia hemisphaerica)
GGGCTGTGCTTCATCCCTTCTCACCGTTTTTGCCATCTACCAAACTGTAC
GGTCAAAATATAAGGTAATGGGCATCCTTTGAAATTTCTGCTGCGGTACT
CTAAAACTCTCTGacttttcattattttcccgAATAGGTGGGTTCCAACG
GGTCATAGAAGAGATGGTTTCTCTAGCGTCTAAAAATCTTCCAACATCGT
TACAGCTTCAAAGTTACAAAGatttatttcagtttttttaaagaatctaa
gtaatcttcaaaaaattttacgtGCTAATGTCTTTTGTCTCACTAATTTT
AGGTTCAAGTAAAATTCATTCTTAAACCTCTGGGCAAATTGGAACATTTG
AAACACCAAAGTTATGAATTAATAAAAGTAAAGTCTCATCATTTTTTCCC
TAGAATTGATGCCAAATCAATAAATAAAGATGAAGCTGAACTCACTCTTA
AGGAAAATAATATTGATCGTATAACCCACCTGTATGTGATCGACGATGAT
GGTGTCGAAGACGTTTTCAGTAATGGTTTTCGAATAAAGAACTCCCAGGA
AGAAGGTTGTATTACCGTCATTCTAAAAAACATTGATAGAAAAAAGAAGT
TCAAAGTTGCTGTATGTGGTATCGTGCGGGATGGAgacaatgaaaaagaa
atttcattgACTTGTGACAAAGAAATTGAACCAAATCAAGgtaattttga
agtcaatctgaTTTCATTCCTTCCtcgtttttgttttattgaccAAAATG
AATGAATTTTGTCGATtagcgaaattaaattccatcaaAAAGACGAAATT
TCACGAATGACCTGAAGCTCCAAGGGGAATTGGGatttacttcgaataac
cggTGTAGCGGATTATTTTAACTCCCTGTAAATGTTGAACCCCCCCAGTT
AAAAAAACTAGGAAATAATGACTCCCCTAGAGTAgaaatttcctaggaaa
tacTGACTCccttagtaaataatgactcccGTAAAAGCTGAGGGAGTCAA
GATAGTCAAGACTAGTTTATCATGACCCCCCTCCCCAAAGTAGTCAAGAA
CTGAAGTCATTCCACTGTCTTTTTATTtatatctaactttcatcacaTTG
TGATTACTGTATTATATTTCTTCTAAAAAATCATTGTGACAAGCGCATTC
TCTCGTTGatctcgggtaaattaatgcgtgtccaaattttcgtcaaTTTC
TCGGAGGCAATTCCACCCCTCCTAGAATAACAAAtcatacctttaaagaa
gcgcattacgatgtagaacatgaaaatcggcgttacttaaatttaggttt
tgccaattttgcgaaaaaccgcaaaaacaaaaaaatgctgacgtcagcaa
aatttattttttaaataactccagtttggctaatggtataaacatgaaat
ttggaccaaagttgcaaaTCATTAACAAAAACACTTTTACATAAtccttt
ttttcagattttgccgacgtcagcagaaatcagcaaaatacgaaaatttg
caataaagtgctgacatcagcaaaatttcaaaaaaaaatttcaaaatgat
ccttttagtgatgtgcaactttggtccaaatttcatgttcataccattag
tcaaactggagttatttaaaaaacaagttttgctgacgtcagcatttttt
ggtttttgcgatttttcgcaaaattggcaaaacctaaatttaagtaacac
cgattttcgtgttctacatcgtaatgcgcttctttaaaggtataatttat
tatgctaggaggggtggaATTGCCTccaaaaaattacgaaaatttggaca
cgcattaatttacccgagatTTCTATTGTCCccgtttttcagattttaaa
accTATTGAGAATTGCTTTAAGATGCTAAACTTTGCTAATTCGTTACTTC
TCTCGTTCAAGGCtatgaaataagaattttttgcagAGCTGATTTTCGTC
GTAGACACCCACCTTTTGccgaaattttttcatttttcaagggactttga
agaattttcagAATGTATGGTGTTTTCACGTAATTTTTGGTAGACACGAA
GTTTAAACATTTATTCTTCATCTGGCTTCTCGTCAGTATTTTGTAAAATG
ATCTTACAAAGAGGGAAGTATACAGCAggtcttaagggctctgaccatag
tcatcATATTTGTCATgtataaaatgtgtttttctgACTAATCTACGATG
CAAAGCCATCACacgttatacattttctgttaggcaaactattcctgaat
ctaaaaaagtaaaaaattgatgaagaagaaaatgaaaacagttgcttttg
atcaatttttcatcccaatttctCATACAAAAAGATAGCCttgatatcca
gaccgtaaactctttcaccgtctagtttttttttggtattttgtctctgg
tttacggtctggtccaagtaactcgtctgcagggatatctgtccctgcat
attgTAGACTGAGCTAACAAAGGGGGAGACGGCTCAGCGGAGAGATCAGT
AATTTAAGACTGTATATGGTTTCGTACCATCGATTAACTTATATTCTCAA
TTTCAACTTATAATAATTTGACAGCGTTTAGTTTACATGAAATGTCTTAC
AAAATAGGTTATACTCTATTCGTGTCTCTTTCAATCTCCGTCTTTCATCA
TCTAAGTTGCAGCTTTTATAGCTGTCAACGGAATGTTAATGGAATGTCGT
TAGTTTTAAATTAAGTAACAGATATTGGCCTTGGGCCGTATGAATCTCAT
TTGTATGTTTGTTGCGGTTTGATCTTCGATCGTTATGTAAGGTATAATTT
CAGCATGTTTCAGCATTTGCGTAAGTTTTAATCATCGATCGTTATGAGAT
ATTGGTCTTGGTTGAACCACTTTCTGATGGGGTGGCCAGCTGGCTTTAAG
CTCCAGCTGACAatatatgcgagtgtctctaattggtcagtacgcgctca
gtcactgagcagaattttcgcggggtttgtgatatttttcgatgcgcgtg
cataatttatggaaaaagctgaccttgcaaaaaaagataaacaaatgaaa
atgaaaacgcaggttcatttctaaacaaaatggccgctggaaaagagcct
ttataaatgtggctgatgttttgatgtagcttaaagtagttttgaaagtt
tttttgagtttgtaaaagaggttttttagtaagttaattatgtgtgtctt
cctgggtttacaaagttttgatagtctgtcaacaagggttcactcacaga
ctGTGCCATTCAAACTGTACCATACtgttttagttgcaccagactctaaa
attttagaaactttgtatgttgaggtaagagtgtttttttctaaaatttt
gagtctggatacccaggctaacaAAAAGAGTCATCacttttgatacatca
atttagaaaaattttctgaaaaaatttagatagttcaatcttttgcagac
agttaaaaaaaaattcgaaacaaaaaggttaattacttaaaactaagcat
tttttgtaaaataaaaattataacaatttattaacgtctttttaaggtCT
GTAGCGTCATTTTTGTGATTAAATTGCTAAATGCTCTTGATAGAATGAAT
TCAAAGACaatatagtagagggcattttgtaaaatcgctcgactgttttg
ttagaagcacttgttatacatttttggaaagctaaggggtagcgcaatcg
aaattactatgtttccaattttttttcggacactttggtgtgattttcgg
acaaatatgacggtctcaggcaaaaatcatagggttaaaaattaatgaaa
atNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNgcaaaaactggacaaaatagctgtttctggctgaaaaaca
cggttttcaagggttaatatctcgagttaggtaggTAGGTTTCAAGAAAC
TTAAAACAAAAGTTATATCTTCAAATCTCGTAAACATtttttcgactatg
gtcagagcccttaagtataAAAATTTTGAGCCAAATCTAAAAATTCTTGA
AGGAAATACTGCCCTCAGGTGGAGTATTTCTTTTACGAGGGTCTGTAGAG
TTAGCCCTGAATAGccaaataaatttcaaataattttgtcataGATATTA
AAGGGGAgtcattttaattcaatttgtcTCCAGTTTTGGGAGGGTAATGA
TATGAAGTTTATGAACATTTGAATTCCAATCTTCAATCTTATTATTCTAC
CCCATAGATCTTGATGAGGCGCTTTTGCTGTCAACCACTCCACCAGggga
aaagaaatcaaaaaatgaaggtttgTATAAAATTGCGTTAAAATTTGTCT
TCAGTTTTGGGAGGGTAATGATATGAAGTTTATGAACATTTGAATTCCAA
TCATCAATTATATTATTCTACTCCATAGATGTTAATGAGGCGCTTTTGTT
GTCAATCACTCCACCAGGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055096-exon-scaffold_250-1491911889:36313..36376 | TCONS_00055096-exon-scaffold_250-1491911889:36313..36376 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1510915933:36313..36376 | TCONS_00055096-exon-scaffold_250-1510915933:36313..36376 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1575043694:36313..36376 | TCONS_00055096-exon-scaffold_250-1575043694:36313..36376 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1491911889:36716..37002 | TCONS_00055096-exon-scaffold_250-1491911889:36716..37002 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1510915933:36716..37002 | TCONS_00055096-exon-scaffold_250-1510915933:36716..37002 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1575043694:36716..37002 | TCONS_00055096-exon-scaffold_250-1575043694:36716..37002 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1491911889:40941..40984 | TCONS_00055096-exon-scaffold_250-1491911889:40941..40984 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1510915933:40941..40984 | TCONS_00055096-exon-scaffold_250-1510915933:40941..40984 | Clytia hemisphaerica | exon |
| TCONS_00055096-exon-scaffold_250-1575043694:40941..40984 | TCONS_00055096-exon-scaffold_250-1575043694:40941..40984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_250 | supercontig | scaffold_250:36313..40984 + |
Blast
The following BLAST results are available for this feature:
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