TCONS_00055087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055087
Unique NameTCONS_00055087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055087 ID=TCONS_00055087|Name=TCONS_00055087|organism=Clytia hemisphaerica|type=transcript|length=284bp
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTTGATGAGGCGCTTTTGTTGTCAACCACTCC
Run BLAST on NCBI

transcript from alignment at scaffold_250:31279..32039+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055087 ID=TCONS_00055087|Name=TCONS_00055087|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at scaffold_250:31279..32039+ (Clytia hemisphaerica)
AACTCAAAGGAGAACAGACTAGGCTGCAAATGAAGAACAACGAGGAGAAA
AAAAGTTATAACGGGGTAGAGAATACTACAAGTGTGCTGCTAAAGAAAAT
CTTTACCTTTGCACTAATTCCGCCTTTTGCCGCTTTTCTTCTCGTGTTGC
CAAAACCTGGAATTGTTTGGGCGATGTCTGGTGTAGGCGCTCTTTTTGTG
CTGGGTGTGAACCTTTTGACGGAAGCAGCGGACAGTTCTATCACTAAAGA
AGGTATACTATacttttcaagtcaaatttgaaacgtcaaaaaaactaGTC
GGCAAAAATGACGAAAAGAAAGTCGTTTGCTCGGCGAAATCTTTTACCGA
AGGGGGTAGCAGCGAGAAGTGGATTATCGGATCAAACTATACTTATACAg
tatatattttcgaaaatttagcccaaaacccttggggaTAGGCATTTCTA
AGGGTTGGAGGGTGCCAAAAAAGGGGGGTCATTTAATAAGGGGGAATCAG
ACATCTTTCCGCACTATAATTCCTCTATGTCTACTATCTTATTATTCTAC
TCCATAGATGTTGATGAGGCGCTTTTGTTGTCAACCACTCCACCAGGGGG
GAAAGAAGCAAAAAACAAAGGTTTGTATAAAATTGCGTTAAAATTTGTCT
TCAGTTTTGGAGGGTAACGATATGAAGTTTATGAACATTTGAATTCCAAT
CATCAATTTTATTATTCTACCCCATAGATGCCGATGAGGCGCTTTTGTTG
TCAACCACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034707XLOC_034707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055087-exon-scaffold_250-1491911889:31279..31530TCONS_00055087-exon-scaffold_250-1491911889:31279..31530Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1510915933:31279..31530TCONS_00055087-exon-scaffold_250-1510915933:31279..31530Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1575043694:31279..31530TCONS_00055087-exon-scaffold_250-1575043694:31279..31530Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1491911889:31838..31846TCONS_00055087-exon-scaffold_250-1491911889:31838..31846Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1510915933:31838..31846TCONS_00055087-exon-scaffold_250-1510915933:31838..31846Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1575043694:31838..31846TCONS_00055087-exon-scaffold_250-1575043694:31838..31846Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1491911889:32017..32039TCONS_00055087-exon-scaffold_250-1491911889:32017..32039Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1510915933:32017..32039TCONS_00055087-exon-scaffold_250-1510915933:32017..32039Clytia hemisphaericaexon
TCONS_00055087-exon-scaffold_250-1575043694:32017..32039TCONS_00055087-exon-scaffold_250-1575043694:32017..32039Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_250supercontigscaffold_250:31279..32039 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.120392	0	0.169485	0	0	0	0	0	0	0	0	0	0	0	0.592245	0	0	0	0	0	0	0.0458429	0	0.144966	0	0	0	0	0.613294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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