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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054992 ID=TCONS_00054992|Name=TCONS_00054992|organism=Clytia hemisphaerica|type=transcript|length=2551bp
AGATAGAGAAACtcagaaaaactaaaaaaacggAGTACAAAagttgttgg
aaagatattcgcGAATACAATTATTCAAGATCAGTTTTAATTCTGCATTC
TATAAAACGTTTTGGagttcgttggaaagatatttatgAGCAAAATGGTT
CGAATGAGCGTAGAAGAAGTTTATGTTGATGGATATTGTTATGTCAATTA
TCCTGTTTTTCACAGGGaTAGTGACGATGCGAACGAGGTTGGGGTCTTCG
GAACGTACAAAGAATACAAGGAACAAATGCAGCAACAACAACTAGCCTCT
GATATCCGAAAAATCATCGAAAATTATCAAGAACCTACCAGGCTGTTAAA
GATTTCCGATTTCTTAGCGCTGCGAACTGCAGGTGATGTATTGAATCTAT
CTCACTGTGAACCTTATGGATTGAAAGGATGCAAATTGATTTTGCTTGTC
AATGACGGTGCAGAGGAATTCAATCTGGGTACACTTTATCCAGAAAAAGG
TATCTTCTCAACATTTGAAATCACTTTAGTGTTACATTTGAAACGCAGTC
CGTGTCGGAAATTACCGTTTTTCAGATGCCGTCAACAAACAATGCACATC
TTAGAACAATATGAGTTACGTAAGGAAAAGATGTATACCAGCAAAAGTCG
TCGATCTTCACCCACTTACTGTAGGTGATACGATTTCAAGAACAAAGTAG
AAAAGTTTTAAGAGGAGGAGAAAACGGAGAAAAAATTTGAACGCTGGATT
TTCAGCACTACCTATAATGGGTGCACCATCTTTACAAAGctgctgaaaaa
aaagaaaatatttctaaatCGTATCGATTAAATTATCCAACTTGCTGCAA
CTTGTTAAACTTGGTATTTTTTAAAGGAGATTGAAGttgttttttattac
tttatggATGGATGGCAATAATTCAATAATTGAGTTTGTTCGTAACTCTA
TAGGatggaaaaatatcaaaacacacaaaaaacaaccCCAAAAAGACGAC
CAACTTTTTGGTTGCCCTACAGACTTCAGTTGTTATCATACTCTAACACC
TGAACTCTTTTTAACTCAATAATTTATTTACCCCCAAatcacaaaaaaca
aaatttttgttcattaccatttatttacattattttttGCCCTTTCCTTa
gtaaaattttgatatcttgctcaaaaatttcataaaaaggataaaatttt
ctcaaaaatttattctatataactttttaatattctttttttatttactt
ttttaaacaatttttcgttacttttttttgactttgaatgcAAGATTTCA
TTATGTTTAGTGAATGTGCAGAATTTAGACAGGTCATCTAAGAACTTACA
TAATTTTTAAAAGTAGGGTCgaaaacataaataaaaaagtCCTTTCGATT
CGTTTTACGGGGAAATGTATCTCacgtttccaaattttgacatttccAAT
TTATAATTTGGTTTGTTGATTGCATCAAAACACAGACCATTGTCTTTTAG
ttatcaaatttctcagaactctgtgttttttttttcatattatttttcat
ttacacAAATTTAATCACactaatatattttttagttTATTTCACGTAAT
TAactttaattttactttattaATCACAAAATATAATAGAAaagtaattt
ttaaatttttatcaattatctTGTTAACACacttttagaaatatttcttc
GCTAGTAAACGAAatcaatagaaatctctttgtTTTCGTTTTGAGTAAAA
GAATCTTTTTGCAATGAGAGTTTTATCATAATTGAAATTTATTctggtct
tttttttttttacattcggACTATAAATTTGAAATCCTTTTTCATGCACT
TGTATTTTAGTTAGCTATTTTCTATTGCAActtattcattatttttatcT
AGAAGACGAAAGCTTGCCCTTCACTTCCTTTCCATTCCCAAGCAAAAGTC
TCGGATTaaccaaaatataaattttttgacagCCTTTGTCATCCAAATGA
AAGATGAGAAACCTTTAGCCTACTTTCAAGTGCTCCTGCTTATGTAACCA
ACGTTCCTAACTTTCTTCCTAACTGTCCAGTCTACCTTCCCCAGACCCCC
TTTAGATTACCACTTTCCCTATCTGACTAACTTAACCAAAATATATCGTT
GTGCTCATTAAGAAGTCTCCTTTCTAAGAAGAATACATCGAGGTCTTGTG
ATAATAGTTTTATTTTAGGATTTAATGCCGGCCATTATTTTCCTTGATCA
CAATAAAACAGTTTTCACATCATGACTTCTTTGGTTTTTTAGAATTTGGA
AATTTCTAATTTAGGCAGCCATTGTATCACCAGTTTATAATcaatatttg
attttattcttgaaacttttttgttgccatttttaatctttttttttcct
tgaaaaatatttttcatttttttattgaattcaaggaaaaatagaaattg
gTTGTAGAGAAATTCTTTTGTGGAAAATATATTGTAATACTAAAACTATG
GGGtgagaatttgataaaaaagtttcttttattgaatgACAATATGCTTT
T Run BLAST on NCBI transcript from alignment at scaffold_248:31684..35514+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054992 ID=TCONS_00054992|Name=TCONS_00054992|organism=Clytia hemisphaerica|type=transcript|length=3831bp|location=Sequence derived from alignment at scaffold_248:31684..35514+ (Clytia hemisphaerica)
AGATAGAGAAACtcagaaaaactaaaaaaacggAGTACAAAagttgttgg
aaagatattcgcGAATACAATTATTCAAGATCAGTTTTAATTCTGCATTC
TATAAAACGTTTTGGagttcgttggaaagatatttatgAGCAAAATGGTT
CGAATGAGCGTAGAAGAAGTTTATGTTGATGGATATTGTTATGTCAATTA
TCCTGTTTTTCACAGGGGTAAACCGTCTTTCATGTTTCAATACAAATTTA
GAGGCTTCTCATAAAATAGTTTGGTttattgaggggaaaatttaatgttg
aaaatttgggTATGAAATATATCAAGATTCTCTTTTAATTGTAATAATCA
AAATCGTTACATATCGTCAATAATCATTATgatgacttttgaaaatattc
taaaaatgatatttttactacaatcagggacaaaatatttggcacaaaaa
ggaaattcaccggggtgttttgaaaccacaatcgatttgtaagtgctcta
aagtaggttcgaagggtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNaagttgaaggcctaaaaattgacattctcgctcgaacttcaattttcg
aaaaattgtaaattagccaaaagtgccaatatattatgaccctgattgta
gcaccaatttttaagattttggctTAATAAAGTGGAAGTCCTCTCTCCAT
CCATATTCTGCAGTCTAGTGTTTCACAAAACAcaataaagttttattttt
taaacattttctcaacttttgtaaattttctttaaaagcatAATGAGGGT
GCTGGCATCCTCAAATAAATATGAAATACAAAGTTCTTGTTTCATAGAAA
GGATGCTTAATACATTGTGCCTAAGAAATGATATTTTACAAAACATACCT
AGagatataacacccctgtctcacagccccggtggaacattattcctcag
tggggataaaaattcctatatGCCTATCCATGCGAAGCTGACTCAGCAGA
TTAGAAGGTCATGGTACtaaacaatatttttctttctttttttacagaTA
GTGACGATGCGAACGAGGTTGGGGTCTTCGGAACGTACAAAGAATACAAG
GAACAAATGCAGCAACAACAACTAGCCTCTGATATCCGAAAAATCATCGA
AAATTATCAAGAACCTACCAGGCTGTTAAAGATTTCCGATTTCTTAGCGC
TGCGAACTGCAGGTGATGTATTGAATCTATCTCACTGTGAACCTTATGGA
TTGAAAGGATGCAAATTGATTTTGCTTGTCAATGACGGTGCAGAGGAATT
CAATCTGGGTACACTTTATCCAGAAAAAGGTATCTTCTCAACATTTGAAA
TCACTTTAGTGTTACATTTGAAACGCAGTCCGTGTCGGAAATTACCGTTT
TTCAGATGCCGTCAACAAACAATGCACATCTTAGAACAATATGAGTTACG
TAAGGAAAAGATGTATACCAGCAAAAGTCGTCGATCTTCACCCACTTACT
GTAGGTGATACGATTTCAAGAACAAAGTAGAAAAGTTTTAAGAGGAGGAG
AAAACGGAGAAAAAATTTGAACGCTGGATTTTCAGCACTACCTATAATGG
GTGCACCATCTTTACAAAGctgctgaaaaaaaagaaaatatttctaaatC
GTATCGATTAAATTATCCAACTTGCTGCAACTTGTTAAACTTGGTATTTT
TTAAAGGAGATTGAAGttgttttttattactttatggATGGATGGCAATA
ATTCAATAATTGAGTTTGTTCGTAACTCTATAGGatggaaaaatatcaaa
acacacaaaaaacaaccCCAAAAAGACGACCAACTTTTTGGTTGCCCTAC
AGACTTCAGTTGTTATCATACTCTAACACCTGAACTCTTTTTAACTCAAT
AATTTATTTACCCCCAAatcacaaaaaacaaaatttttgttcattaccat
ttatttacattattttttGCCCTTTCCTTagtaaaattttgatatcttgc
tcaaaaatttcataaaaaggataaaattttctcaaaaatttattctatat
aactttttaatattctttttttatttacttttttaaacaatttttcgtta
cttttttttgactttgaatgcAAGATTTCATTATGTTTAGTGAATGTGCA
GAATTTAGACAGGTCATCTAAGAACTTACATAATTTTTAAAAGTAGGGTC
gaaaacataaataaaaaagtCCTTTCGATTCGTTTTACGGGGAAATGTAT
CTCacgtttccaaattttgacatttccAATTTATAATTTGGTTTGTTGAT
TGCATCAAAACACAGACCATTGTCTTTTAGttatcaaatttctcagaact
ctgtgttttttttttcatattatttttcatttacacAAATTTAATCACac
taatatattttttagttTATTTCACGTAATTAactttaattttactttat
taATCACAAAATATAATAGAAaagtaatttttaaatttttatcaattatc
tTGTTAACACacttttagaaatatttcttcGCTAGTAAACGAAatcaata
gaaatctctttgtTTTCGTTTTGAGTAAAAGAATCTTTTTGCAATGAGAG
TTTTATCATAATTGAAATTTATTctggtcttttttttttttacattcggA
CTATAAATTTGAAATCCTTTTTCATGCACTTGTATTTTAGTTAGCTATTT
TCTATTGCAActtattcattatttttatcTAGAAGACGAAAGCTTGCCCT
TCACTTCCTTTCCATTCCCAAGCAAAAGTCTCGGATTaaccaaaatataa
attttttgacagCCTTTGTCATCCAAATGAAAGATGAGAAACCTTTAGCC
TACTTTCAAGTGCTCCTGCTTATGTAACCAACGTTCCTAACTTTCTTCCT
AACTGTCCAGTCTACCTTCCCCAGACCCCCTTTAGATTACCACTTTCCCT
ATCTGACTAACTTAACCAAAATATATCGTTGTGCTCATTAAGAAGTCTCC
TTTCTAAGAAGAATACATCGAGGTCTTGTGATAATAGTTTTATTTTAGGA
TTTAATGCCGGCCATTATTTTCCTTGATCACAATAAAACAGTTTTCACAT
CATGACTTCTTTGGTTTTTTAGAATTTGGAAATTTCTAATTTAGGCAGCC
ATTGTATCACCAGTTTATAATcaatatttgattttattcttgaaactttt
ttgttgccatttttaatctttttttttccttgaaaaatatttttcatttt
tttattgaattcaaggaaaaatagaaattggTTGTAGAGAAATTCTTTTG
TGGAAAATATATTGTAATACTAAAACTATGGGGtgagaatttgataaaaa
agtttcttttattgaatgACAATATGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054992-exon-scaffold_248-1491911889:31684..31900 | TCONS_00054992-exon-scaffold_248-1491911889:31684..31900 | Clytia hemisphaerica | exon |
| TCONS_00054992-exon-scaffold_248-1510915933:31684..31900 | TCONS_00054992-exon-scaffold_248-1510915933:31684..31900 | Clytia hemisphaerica | exon |
| TCONS_00054992-exon-scaffold_248-1575043694:31684..31900 | TCONS_00054992-exon-scaffold_248-1575043694:31684..31900 | Clytia hemisphaerica | exon |
| TCONS_00054992-exon-scaffold_248-1491911889:33181..35514 | TCONS_00054992-exon-scaffold_248-1491911889:33181..35514 | Clytia hemisphaerica | exon |
| TCONS_00054992-exon-scaffold_248-1510915933:33181..35514 | TCONS_00054992-exon-scaffold_248-1510915933:33181..35514 | Clytia hemisphaerica | exon |
| TCONS_00054992-exon-scaffold_248-1575043694:33181..35514 | TCONS_00054992-exon-scaffold_248-1575043694:33181..35514 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_248 | supercontig | scaffold_248:31684..35514 + |
Blast
The following BLAST results are available for this feature:
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