TCONS_00054992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054992
Unique NameTCONS_00054992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054992 ID=TCONS_00054992|Name=TCONS_00054992|organism=Clytia hemisphaerica|type=transcript|length=2551bp
AGATAGAGAAACtcagaaaaactaaaaaaacggAGTACAAAagttgttgg
aaagatattcgcGAATACAATTATTCAAGATCAGTTTTAATTCTGCATTC
TATAAAACGTTTTGGagttcgttggaaagatatttatgAGCAAAATGGTT
CGAATGAGCGTAGAAGAAGTTTATGTTGATGGATATTGTTATGTCAATTA
TCCTGTTTTTCACAGGGaTAGTGACGATGCGAACGAGGTTGGGGTCTTCG
GAACGTACAAAGAATACAAGGAACAAATGCAGCAACAACAACTAGCCTCT
GATATCCGAAAAATCATCGAAAATTATCAAGAACCTACCAGGCTGTTAAA
GATTTCCGATTTCTTAGCGCTGCGAACTGCAGGTGATGTATTGAATCTAT
CTCACTGTGAACCTTATGGATTGAAAGGATGCAAATTGATTTTGCTTGTC
AATGACGGTGCAGAGGAATTCAATCTGGGTACACTTTATCCAGAAAAAGG
TATCTTCTCAACATTTGAAATCACTTTAGTGTTACATTTGAAACGCAGTC
CGTGTCGGAAATTACCGTTTTTCAGATGCCGTCAACAAACAATGCACATC
TTAGAACAATATGAGTTACGTAAGGAAAAGATGTATACCAGCAAAAGTCG
TCGATCTTCACCCACTTACTGTAGGTGATACGATTTCAAGAACAAAGTAG
AAAAGTTTTAAGAGGAGGAGAAAACGGAGAAAAAATTTGAACGCTGGATT
TTCAGCACTACCTATAATGGGTGCACCATCTTTACAAAGctgctgaaaaa
aaagaaaatatttctaaatCGTATCGATTAAATTATCCAACTTGCTGCAA
CTTGTTAAACTTGGTATTTTTTAAAGGAGATTGAAGttgttttttattac
tttatggATGGATGGCAATAATTCAATAATTGAGTTTGTTCGTAACTCTA
TAGGatggaaaaatatcaaaacacacaaaaaacaaccCCAAAAAGACGAC
CAACTTTTTGGTTGCCCTACAGACTTCAGTTGTTATCATACTCTAACACC
TGAACTCTTTTTAACTCAATAATTTATTTACCCCCAAatcacaaaaaaca
aaatttttgttcattaccatttatttacattattttttGCCCTTTCCTTa
gtaaaattttgatatcttgctcaaaaatttcataaaaaggataaaatttt
ctcaaaaatttattctatataactttttaatattctttttttatttactt
ttttaaacaatttttcgttacttttttttgactttgaatgcAAGATTTCA
TTATGTTTAGTGAATGTGCAGAATTTAGACAGGTCATCTAAGAACTTACA
TAATTTTTAAAAGTAGGGTCgaaaacataaataaaaaagtCCTTTCGATT
CGTTTTACGGGGAAATGTATCTCacgtttccaaattttgacatttccAAT
TTATAATTTGGTTTGTTGATTGCATCAAAACACAGACCATTGTCTTTTAG
ttatcaaatttctcagaactctgtgttttttttttcatattatttttcat
ttacacAAATTTAATCACactaatatattttttagttTATTTCACGTAAT
TAactttaattttactttattaATCACAAAATATAATAGAAaagtaattt
ttaaatttttatcaattatctTGTTAACACacttttagaaatatttcttc
GCTAGTAAACGAAatcaatagaaatctctttgtTTTCGTTTTGAGTAAAA
GAATCTTTTTGCAATGAGAGTTTTATCATAATTGAAATTTATTctggtct
tttttttttttacattcggACTATAAATTTGAAATCCTTTTTCATGCACT
TGTATTTTAGTTAGCTATTTTCTATTGCAActtattcattatttttatcT
AGAAGACGAAAGCTTGCCCTTCACTTCCTTTCCATTCCCAAGCAAAAGTC
TCGGATTaaccaaaatataaattttttgacagCCTTTGTCATCCAAATGA
AAGATGAGAAACCTTTAGCCTACTTTCAAGTGCTCCTGCTTATGTAACCA
ACGTTCCTAACTTTCTTCCTAACTGTCCAGTCTACCTTCCCCAGACCCCC
TTTAGATTACCACTTTCCCTATCTGACTAACTTAACCAAAATATATCGTT
GTGCTCATTAAGAAGTCTCCTTTCTAAGAAGAATACATCGAGGTCTTGTG
ATAATAGTTTTATTTTAGGATTTAATGCCGGCCATTATTTTCCTTGATCA
CAATAAAACAGTTTTCACATCATGACTTCTTTGGTTTTTTAGAATTTGGA
AATTTCTAATTTAGGCAGCCATTGTATCACCAGTTTATAATcaatatttg
attttattcttgaaacttttttgttgccatttttaatctttttttttcct
tgaaaaatatttttcatttttttattgaattcaaggaaaaatagaaattg
gTTGTAGAGAAATTCTTTTGTGGAAAATATATTGTAATACTAAAACTATG
GGGtgagaatttgataaaaaagtttcttttattgaatgACAATATGCTTT
T
Run BLAST on NCBI

transcript from alignment at scaffold_248:31684..35514+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054992 ID=TCONS_00054992|Name=TCONS_00054992|organism=Clytia hemisphaerica|type=transcript|length=3831bp|location=Sequence derived from alignment at scaffold_248:31684..35514+ (Clytia hemisphaerica)
AGATAGAGAAACtcagaaaaactaaaaaaacggAGTACAAAagttgttgg aaagatattcgcGAATACAATTATTCAAGATCAGTTTTAATTCTGCATTC TATAAAACGTTTTGGagttcgttggaaagatatttatgAGCAAAATGGTT CGAATGAGCGTAGAAGAAGTTTATGTTGATGGATATTGTTATGTCAATTA TCCTGTTTTTCACAGGGGTAAACCGTCTTTCATGTTTCAATACAAATTTA GAGGCTTCTCATAAAATAGTTTGGTttattgaggggaaaatttaatgttg aaaatttgggTATGAAATATATCAAGATTCTCTTTTAATTGTAATAATCA AAATCGTTACATATCGTCAATAATCATTATgatgacttttgaaaatattc taaaaatgatatttttactacaatcagggacaaaatatttggcacaaaaa ggaaattcaccggggtgttttgaaaccacaatcgatttgtaagtgctcta aagtaggttcgaagggtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNaagttgaaggcctaaaaattgacattctcgctcgaacttcaattttcg aaaaattgtaaattagccaaaagtgccaatatattatgaccctgattgta gcaccaatttttaagattttggctTAATAAAGTGGAAGTCCTCTCTCCAT CCATATTCTGCAGTCTAGTGTTTCACAAAACAcaataaagttttattttt taaacattttctcaacttttgtaaattttctttaaaagcatAATGAGGGT GCTGGCATCCTCAAATAAATATGAAATACAAAGTTCTTGTTTCATAGAAA GGATGCTTAATACATTGTGCCTAAGAAATGATATTTTACAAAACATACCT AGagatataacacccctgtctcacagccccggtggaacattattcctcag tggggataaaaattcctatatGCCTATCCATGCGAAGCTGACTCAGCAGA TTAGAAGGTCATGGTACtaaacaatatttttctttctttttttacagaTA GTGACGATGCGAACGAGGTTGGGGTCTTCGGAACGTACAAAGAATACAAG GAACAAATGCAGCAACAACAACTAGCCTCTGATATCCGAAAAATCATCGA AAATTATCAAGAACCTACCAGGCTGTTAAAGATTTCCGATTTCTTAGCGC TGCGAACTGCAGGTGATGTATTGAATCTATCTCACTGTGAACCTTATGGA TTGAAAGGATGCAAATTGATTTTGCTTGTCAATGACGGTGCAGAGGAATT CAATCTGGGTACACTTTATCCAGAAAAAGGTATCTTCTCAACATTTGAAA TCACTTTAGTGTTACATTTGAAACGCAGTCCGTGTCGGAAATTACCGTTT TTCAGATGCCGTCAACAAACAATGCACATCTTAGAACAATATGAGTTACG TAAGGAAAAGATGTATACCAGCAAAAGTCGTCGATCTTCACCCACTTACT GTAGGTGATACGATTTCAAGAACAAAGTAGAAAAGTTTTAAGAGGAGGAG AAAACGGAGAAAAAATTTGAACGCTGGATTTTCAGCACTACCTATAATGG GTGCACCATCTTTACAAAGctgctgaaaaaaaagaaaatatttctaaatC GTATCGATTAAATTATCCAACTTGCTGCAACTTGTTAAACTTGGTATTTT TTAAAGGAGATTGAAGttgttttttattactttatggATGGATGGCAATA ATTCAATAATTGAGTTTGTTCGTAACTCTATAGGatggaaaaatatcaaa acacacaaaaaacaaccCCAAAAAGACGACCAACTTTTTGGTTGCCCTAC AGACTTCAGTTGTTATCATACTCTAACACCTGAACTCTTTTTAACTCAAT AATTTATTTACCCCCAAatcacaaaaaacaaaatttttgttcattaccat ttatttacattattttttGCCCTTTCCTTagtaaaattttgatatcttgc tcaaaaatttcataaaaaggataaaattttctcaaaaatttattctatat aactttttaatattctttttttatttacttttttaaacaatttttcgtta cttttttttgactttgaatgcAAGATTTCATTATGTTTAGTGAATGTGCA GAATTTAGACAGGTCATCTAAGAACTTACATAATTTTTAAAAGTAGGGTC gaaaacataaataaaaaagtCCTTTCGATTCGTTTTACGGGGAAATGTAT CTCacgtttccaaattttgacatttccAATTTATAATTTGGTTTGTTGAT TGCATCAAAACACAGACCATTGTCTTTTAGttatcaaatttctcagaact ctgtgttttttttttcatattatttttcatttacacAAATTTAATCACac taatatattttttagttTATTTCACGTAATTAactttaattttactttat taATCACAAAATATAATAGAAaagtaatttttaaatttttatcaattatc tTGTTAACACacttttagaaatatttcttcGCTAGTAAACGAAatcaata gaaatctctttgtTTTCGTTTTGAGTAAAAGAATCTTTTTGCAATGAGAG TTTTATCATAATTGAAATTTATTctggtcttttttttttttacattcggA CTATAAATTTGAAATCCTTTTTCATGCACTTGTATTTTAGTTAGCTATTT TCTATTGCAActtattcattatttttatcTAGAAGACGAAAGCTTGCCCT TCACTTCCTTTCCATTCCCAAGCAAAAGTCTCGGATTaaccaaaatataa attttttgacagCCTTTGTCATCCAAATGAAAGATGAGAAACCTTTAGCC TACTTTCAAGTGCTCCTGCTTATGTAACCAACGTTCCTAACTTTCTTCCT AACTGTCCAGTCTACCTTCCCCAGACCCCCTTTAGATTACCACTTTCCCT ATCTGACTAACTTAACCAAAATATATCGTTGTGCTCATTAAGAAGTCTCC TTTCTAAGAAGAATACATCGAGGTCTTGTGATAATAGTTTTATTTTAGGA TTTAATGCCGGCCATTATTTTCCTTGATCACAATAAAACAGTTTTCACAT CATGACTTCTTTGGTTTTTTAGAATTTGGAAATTTCTAATTTAGGCAGCC ATTGTATCACCAGTTTATAATcaatatttgattttattcttgaaactttt ttgttgccatttttaatctttttttttccttgaaaaatatttttcatttt tttattgaattcaaggaaaaatagaaattggTTGTAGAGAAATTCTTTTG TGGAAAATATATTGTAATACTAAAACTATGGGGtgagaatttgataaaaa agtttcttttattgaatgACAATATGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034651XLOC_034651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054992-exon-scaffold_248-1491911889:31684..31900TCONS_00054992-exon-scaffold_248-1491911889:31684..31900Clytia hemisphaericaexon
TCONS_00054992-exon-scaffold_248-1510915933:31684..31900TCONS_00054992-exon-scaffold_248-1510915933:31684..31900Clytia hemisphaericaexon
TCONS_00054992-exon-scaffold_248-1575043694:31684..31900TCONS_00054992-exon-scaffold_248-1575043694:31684..31900Clytia hemisphaericaexon
TCONS_00054992-exon-scaffold_248-1491911889:33181..35514TCONS_00054992-exon-scaffold_248-1491911889:33181..35514Clytia hemisphaericaexon
TCONS_00054992-exon-scaffold_248-1510915933:33181..35514TCONS_00054992-exon-scaffold_248-1510915933:33181..35514Clytia hemisphaericaexon
TCONS_00054992-exon-scaffold_248-1575043694:33181..35514TCONS_00054992-exon-scaffold_248-1575043694:33181..35514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_248supercontigscaffold_248:31684..35514 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.68699 3.25646 12.7757 12.5965 0.620374 0.468749 1.93042 1.85818 1.32042 5.95588 2.38917 3.90304 4.25386 2.51931 4.29296 5.86248 5.08422 8.73755 5.35763 12.6686 0.699054 0.722517 6.43712 4.51889 1.66341 1.41543 129.169 90.0126 21.9938 14.6653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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