TCONS_00054911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054911
Unique NameTCONS_00054911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054911 ID=TCONS_00054911|Name=TCONS_00054911|organism=Clytia hemisphaerica|type=transcript|length=1620bp
CAAGAATTTTTTAATCCTTCAAACTGATAAGATTATCATAGTCATAATAA
AATGGGGGCCATTTTAttcttgatgacgtcacagatcTGATGAATGTATC
AACCAAAACGTCGACAAGCGataatgtaataaaaatattttcagaatgat
aaaatagatttttcttaCATAGCCTGACAGATCATTTATTGTAATtgatt
tttaaacctttttctCATGAAATTGCTGACAAATACTTTACAAAACCTCA
GATAAAGTTATACAAAGTCGTTTCGAGCTTTTAAAGAAAGAGTTGTAGTT
TTGGACGTAACAACAATGGCTCAAAAACAGCATCGAGTGGAAATCCCAGC
ACCAGACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTACAACCAAA
ACGCACAACAACCTGTCACAAAGTCCTACATCCGCAACAATATGTCTGAT
GCCATGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAACAaGATCG
TCAGCAGCGACCGGAATTCTTAGCCAAACAACATCAACTGAAATCGAGTG
CTgccaaaaaacaacaacaaaaagatcACGAAGAAAACAACGAACTCTTC
GCAAAACTAAAATCACGATCGCAAGCTATCGATAATGACGAGagacaaaa
agaagaagaagctcAACGTCCAGAGTTTATGAAAGTCAAATTAAAAAGTG
GTCCAAATACTCCCATAGCGTCTTCATAGATACAAACTCATCACTTGAAT
TACCCAGGATTCTCTGTTTGGCGTTGGACTGAAGATGAAACTGGCCTCAG
ATTGGCTGAATTTTCCTCCCCTTGTTTTCTGTGAACGGAAATATGTCGGA
CAAGATACATGTTGGAACTTTGAAATTTCACAcatttcaaacattttgtt
ttaaagATGGTTTTATTTGCTCTCGCAATGGACAGAATCTTGGACAGAAT
CTTCTGTTcgaatcttttgttttttagctTTATGTTGTGTTAAGCTAGGA
TTAATCACAGCTTTGAGCGCCAACGAAGCTGAAACTCTGTCGGCTAAATA
ATGCGAGGAATCGATGAAAAACCAGCGGGGCACAGCTGCAGGGCACTGAC
CCATAACTGGGTGGCTCTGTCTAATTTTGATTCTCAGAAGCGATCGACCA
TTTCAAGATAGTACTTGGTACTGGATTTTGGTAAATACTAAAGTAAATAC
CAGTTACTAAAAAGGGGGCGGTGGTAGTTAAAACAATTCCTTCTGAAAGT
ACCCTATGGATTAGTACCCTGCGGCTGTATCCTTCCCTGtgaaaaaacat
gttttttttattctggttttttttcgaagatttaCTGTTCCATCATTGCT
GAATAGTTTTAGTCAAGCACAGTCTAAATATTCATATGTCTATGGTCAAG
TGTGATTCTAACGAGTTTTAAAGCACTGTTAGTCTTCGCAAACATACTTC
CTATGTAAACCTGAGATGACAGAAGATATATTTCCCTACGAGCGTTCTCC
ATTTTTGTAGATTCTTCAAAATTGTATCGATAAGATttttgtatatatat
tttttctaataaagaattaGTTTTAGTACAAAGTAAATCATTATGTAGTT
TGAAAATATCttactttgaa
Run BLAST on NCBI

transcript from alignment at scaffold_246:127084..130535-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054911 ID=TCONS_00054911|Name=TCONS_00054911|organism=Clytia hemisphaerica|type=transcript|length=3452bp|location=Sequence derived from alignment at scaffold_246:127084..130535- (Clytia hemisphaerica)
CAAGAATTTTTTAATCCTTCAAACTGATAAGATTATCATAGTCATAATAA
AATGGGGGCCATTTTATTCTTGATGACGTCACAGATCTGATGAATGTATC
AACCAAAACGTCGACAAGCGATAATGTAATAAAAATATTTTCAGAATGAT
AAAATAGATTTTTCTTACATAGCCTGACAGATCATTTATTGTAATTGATT
TTTAAACCTTTTTCTCATGAAATTGCTGACAAATACTTTACAAAACCTCA
GATAAAGTTATACAAAGTCGTTTCGAGCTTTTAAAGAAAGAGTTGTAGTT
TTGGACGTAACAACAATGGCTCAAAAACAGCATCGAGGTACTAAATCTGT
TTTGTTTGTTTAGTATCTTTCTTATAATGAAAATAGTTCCATATCCATGA
GTAAAGGTTTTAGTTCAGCCAATTTATAATCAAGGTCAAAGAAAATCTCT
TCAGACAGCTTGAGAGGAATTCCTTGGCATATTTTACGTAATTTTATTCA
TCATTTGATCCGTTTTTTATTGAGGGATTTAGAATAAGTGAATGATGGGG
AACACATTTTCCAGTTGCTTTGTTTCCCATTCAGCCTCTTTTTCTTTCAT
ATTTTATTTACCAGTTTATCAGTTTGAAACTTCTTCTTCAAAATAAGGAA
AAAGAAAGAAAATTTAGGAAAAGGAAATCTTTCATACAAAATTCCTTAAT
TATTTAAAGGAGAGTGTGTTAGGATTTCCAAGGGATATACTTTATTATAG
TCTCACCTCTCACTATATGAGATTCACTTGATGAAAGTTTTGAATGGAAA
TGGATGAAAATCTTATAACACTTTCTTTTTCGTCTTGATGTGTTTAAATC
TTATTCGTTCTGTAAATCTTCTTCTTTGAACATGTGAATAATTAGTAGTT
TCAAGTATTGTTTGTTGTCAAGAGATTACCGGGTGATTAATCAGTAATTG
GCAATTTCCTTCTTCATCTAATTACAAGGCAGTAGAAAGATAATTAGAAG
CATCCATGTATGTTTAAAATTCTTCGTAGCTTTACTACTCGTTTGAAGTG
TTTACATGTTTGATCAGATATTTACGAGAAAAATCAATAAGATAGAAAAG
TCGAGAAGAATTTGATGGGAAATGATAGATCTAAATCTAACCATATTTAG
TTTAGCTAATAGAAGAGGATTTTTATGTTGAAATTAATTTTCGATGCGTT
TGTTCCTATTTCGTAGTTTTTTAAAAGTTGCCACCGTAGGTTACATGGAC
ATGGCAAGGCTTCATGATGTATACTGTCATAAATTTGCCTCCAAGTTCGT
CACTAAATGACGTTAATGATGATATAAAGGACAGCTCTTTACTTTGTGAC
TGCTTTTTAAAATAATTCTTGATAAAAAGCTGGTATTTTGCTATGAATGA
CTTATCAGAATCAAAGGCAGTTTGAAATCCAGGAGTCTAATGTCATGTTT
TTGGTTGTTCTGTTGTTGTTTTTGTCATTGTATACCTGAAATAAATTTCT
CATGAGAGTCATGTTTCTCAATGCTTTCTTTATATATCATGATTGTGAAA
GATCCTTAAGTTGAAAATTTATCAAAGTTTATTTCCAATTCATAGAGAGT
ATAGATGCAGTATTTAGTTTTGTTGAGATGGTTATATTTTGTTTTGAGTG
TAGATTAAATGTGCAACTCTGAAGCTCGATTTGATTACCTCTGCCTTGAG
CCTGTATATTGTTCTTCATAGTTCGCTATATTCTCTTATTTCAGTGGAAA
TCCCAGCACCAGACTACGAAGGAGCACCTTCTTTGCCACCTGTTGATTAC
AACCAAAACGCACAACAACCTGTCACAAAGTCCTACATCCGCAACAATAT
GTCTGATGCCATGAAAGAAATCTCCAAAGATATTAACTTCAGAGCAAAAC
AGTAAGTGTCGTTTACTTATGAAATTTAAAGGAAGAAAAATATGGACAAA
TTTAGTAAACTCTAGACCCTAAATGTGTGGTTTTTGTATACTTAGAGAAA
CTTACAGATGAAAAGTCTGGATGACTGCAATTTGGATTTTAGACGCTTAT
ACCTTTGATCTTAGGGTGGAGAATCGTTCCAATAAAATAGTGACAATAGC
ATATTTCTTACCATGAAATCTTCAAATAAACTCTTCCTTGTTTTGTTATT
TTTCAGAGATCGTCAGCAGCGACCGGAATTCTTAGCCAAACAACATCAAC
TGAAATCGAGTGCTGCCAAAAAACAACAACAAAAAGATCACGAAGAAAAC
AACGAACTCTTCGCAAAACTAAAATCACGATCGCAAGCTATCGATAATGT
ATGTCTTTGATAAATTTTCTCATCTATTTCGTAGTAAGCCTCATAAGCTA
TCGTATACACGTGTTAACTTATAAATCCCTTAAGAGACTAAAGGCACCTC
ATTGAAAGTGTTAATAATCTATTTCGCATTTGAGTACCTCAACAACATTT
CTCTATTCTCATTTTCAGGACGAGAGACAAAAAGAAGAAGAAGCTCAACG
TCCAGAGTTTATGAAAGTCAAATTAAAAAGTGGTCCAAATACTCCCATAG
CGTCTTCATAGATACAAACTCATCACTTGAATTACCCAGGATTCTCTGTT
TGGCGTTGGACTGAAGATGAAACTGGCCTCAGATTGGCTGAATTTTCCTC
CCCTTGTTTTCTGTGAACGGAAATATGTCGGACAAGATACATGTTGGAAC
TTTGAAATTTCACACATTTCAAACATTTTGTTTTAAAGATGGTTTTATTT
GCTCTCGCAATGGACAGAATCTTGGACAGAATCTTCTGTTCGAATCTTTT
GTTTTTTAGCTTTATGTTGTGTTAAGCTAGGATTAATCACAGCTTTGAGC
GCCAACGAAGCTGAAACTCTGTCGGCTAAATAATGCGAGGAATCGATGAA
AAACCAGCGGGGCACAGCTGCAGGGCACTGACCCATAACTGGGTGGCTCT
GTCTAATTTTGATTCTCAGAAGCGATCGACCATTTCAAGATAGTACTTGG
TACTGGATTTTGGTAAATACTAAAGTAAATACCAGTTACTAAAAAGGGGG
CGGTGGTAGTTAAAACAATTCCTTCTGAAAGTACCCTATGGATTAGTACC
CTGCGGCTGTATCCTTCCCTGTGAAAAAACATGTTTTTTTTATTCTGGTT
TTTTTTCGAAGATTTACTGTTCCATCATTGCTGAATAGTTTTAGTCAAGC
ACAGTCTAAATATTCATATGTCTATGGTCAAGTGTGATTCTAACGAGTTT
TAAAGCACTGTTAGTCTTCGCAAACATACTTCCTATGTAAACCTGAGATG
ACAGAAGATATATTTCCCTACGAGCGTTCTCCATTTTTGTAGATTCTTCA
AAATTGTATCGATAAGATTTTTGTATATATATTTTTTCTAATAAAGAATT
AGTTTTAGTACAAAGTAAATCATTATGTAGTTTGAAAATATCTTACTTTG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034602XLOC_034602Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054911-exon-scaffold_246-1575043694:130199..130535TCONS_00054911-exon-scaffold_246-1575043694:130199..130535Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1575043694:128635..128791TCONS_00054911-exon-scaffold_246-1575043694:128635..128791Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1575043694:128238..128379TCONS_00054911-exon-scaffold_246-1575043694:128238..128379Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1575043694:127084..128067TCONS_00054911-exon-scaffold_246-1575043694:127084..128067Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1510915933:130199..130535TCONS_00054911-exon-scaffold_246-1510915933:130199..130535Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1510915933:128635..128791TCONS_00054911-exon-scaffold_246-1510915933:128635..128791Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1510915933:128238..128379TCONS_00054911-exon-scaffold_246-1510915933:128238..128379Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1510915933:127084..128067TCONS_00054911-exon-scaffold_246-1510915933:127084..128067Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1491911889:130199..130535TCONS_00054911-exon-scaffold_246-1491911889:130199..130535Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1491911889:128635..128791TCONS_00054911-exon-scaffold_246-1491911889:128635..128791Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1491911889:128238..128379TCONS_00054911-exon-scaffold_246-1491911889:128238..128379Clytia hemisphaericaexon
TCONS_00054911-exon-scaffold_246-1491911889:127084..128067TCONS_00054911-exon-scaffold_246-1491911889:127084..128067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_246supercontigscaffold_246:127084..130535 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.361055	0.487166	1.17739	0.776831	0	0	0	0.25904	0.640759	0.890692	0.626557	0.800153	1.69956	2.42993	0.629976	0.575615	2.11139	3.60924	3.32027	3.63698	16.1279	20.2664	9.86036	10.0584	2.71741	3.19837	38.9374	41.5222	1.15211	2.70115
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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