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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054781 ID=TCONS_00054781|Name=TCONS_00054781|organism=Clytia hemisphaerica|type=transcript|length=2404bp
CTAAACAAAAATCAAGAGATCTCGTCATAAGAAATGTGAAATCTTTAGAA
ATAACATATCGAAAAGATATTTCCGTAACCCTAATACCGTGTACAGATAA
ATATAAGATTTATCTATAAGATAAATATAAAGCAACAGTGTGGAGGTTTA
AGTTTCTGGGGAAATATCCCACGGGTAGGGGAACGGAGAGATGTCTTCAT
CTGATCATCAAATCTTGGAGGCTGGAGATCAGCCTCATCCTACATGTTCC
TGCGTATTCGATACCTCTGGAACACATGCTGCTCTATCTCCATGACAACT
AACGCATCATCATGTCATTAAGTTATCAGGTTTTAAGGCACATACCAAAG
GAAATTATATTGGAACTAAAATCGCAATATTTTTTTCCGTGCCGATAATG
TCAAAAAATGTGCGAACCTGGTTTTCTTGACCTGTGAAACTTTCCCTGAT
TAAATGCCCTTTTTGTACAttccaaattatttttgaaaaaatacactTAG
AGGTCCTTTAAAGTTTCTTAAAACGAATTTGATGTTTTAACAAGAGTCGA
GATAATTATCTTTGCAAAAAACAAGAGGTTTTTGTAGTAAGAGAAAGAGA
GAACGATTATCATAGCATAGCACTGACGTCTAAGTTGTTATGACAACCTA
AATCATAAATATTTATGATAAGTCTTTTGTCAATGATTGTTCAAAGACAA
TAGCTTCCTTATAAGGCACAATACGGTTGGAAAATAAGACAGAAACCATA
AAACTGGGAAACGAGAACGAAAAGTTCAGTTCATGAATAGAGCGAGAGAG
TTCGGTCAAGTTCGTTTTTGAAAAGTCGGCAGCGGATATTAGACTAAGTG
AAACATTTACAGATGACCTGGAGCGCGAATATGATTCCACTAAATGATGG
AACAGATTTGAGGGTTTCTTCTATGATCGATCGCATACCTAATCTACCAT
GCTCAGATTCACAAGTATCTTGTATGCCAGATGAAAAAGTTTACACATCA
CAACAAATCACCGTCAATAGCTCAACTCCGAATAACGAAGACTGGCGAAC
GACTTTGAATGAGATGGACGTATACCTTGCTGAGGACGAATTCACTCgtc
aaaatgttttcaacaGATCACCAAATAAACCAGTTTGTCTACCTACTTCA
ACCATTGTTTCAACACGCCAGCGACGCCCATCCGTCGGCCGTGTGGAAGA
ATTTTGCAGTGAAAGCGAAAGTGATTCTTCTTCTACAACATACGATGAAC
CAATGCATGAAAGCAATTCCCTCATAGAACACGAGCAAACACCAATGGGA
AGCCCTGTTTTTCACTGTGCTTCAAACACCGTCAAAACAGAAGTACCTCC
GACTTATTTCGAAAGTATGAAATGTGAGCCCACCAGCCCTTCAACCATTT
TTACCTCCACCACGACACTTTTCTCACAAAAACTTAACAATACAACATCT
TCTCTACAAAAATCATTCATCAATCAACCTCCAATCAACGTTCGTCCGCC
ACCTTACCTAGATGCAGCCACTATGGCTGCTAAACGTCAAACATATCGAC
AAACAATACCTACAACGAGAGCATTTCCCATCAACTTTAGTTGTGCTCCA
CTTAGAGACACTCAAAGtgaaatcatcaaaaataagaaaacacaTAGATG
CGATTATCCAAACTGCAATAAAGTATACACAAAATCGTCGCACTTGAAAG
CTCATTTCCGTACACATACCGGTGAAAAACCGTACGAATGTCAATGGGAA
GGCTGTGATTGGAAGTTTGCTCGATCTGACGAGCTGACGAGGCATTATCG
TAAACATACTGGCGACAAACCATTCAAATGTGCACATTGCGATAAAGCTT
TTTCACGATCAGATCACTTAGCTCTTCACAATAGAAAGCATACCAACCAA
AACCATTAAAATGAAAACGATGAATGatgaaaaaacaataaaacgaAAAA
TTAAGCTGGATTTGATTTTAGTTTCTTAGAAGTTTGACAAAATGTACTTT
GTTGCTTTATGCAACTCTCCTTATTTTCGAGGTTGGGCGGAGAGCCCGCG
ATGCCTTCTTTGTGTTCTGGTTTCTCCGCCCTCCCGCCATAGTTAGTATT
TTTCTGTTTAAAAGTTTATATTGTATATAGTATAGAGTATGAAAAAGCAA
ACCTTAATGAACATTTTTGTAAGTATTTGTACATAACAACAAAATCgaga
attttttcttataacaaaacttTAACGCAGATATTATAAATAGATTTTAT
GAGCCACTACACTGCTACCACAGCAGTTAGTCAAAATAACTTACTTTGtt
tcaaaatagaaatagaaaattgaagaaatgaaaaataagtttgttatTTA
CATCCTTAACTCTGGTCATTCCCGCCCCAGCGaaacaatttatttttgtc
CCTC Run BLAST on NCBI transcript from alignment at scaffold_245:472155..476329+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054781 ID=TCONS_00054781|Name=TCONS_00054781|organism=Clytia hemisphaerica|type=transcript|length=4175bp|location=Sequence derived from alignment at scaffold_245:472155..476329+ (Clytia hemisphaerica)
CTAAACAAAAATCAAGAGATCTCGTCATAAGAAATGTGAAATCTTTAGAA
ATAACATATCGAAAAGATATTTCCGTAACCCTAATACCGTGTACAGATAA
ATATAAGATTTATCTATAAGATAAATATAAAGCAACAGTGTGGAGGTTTA
AGTTTCTGGGGAAATATCCCACGGGTAGGGGAACGGAGAGATGTCTTCAT
CTGATCATCAAATCTTGGAGGCTGGAGATCAGCCTCATCCTACATGTTCC
TGCGTATTCGATACCTCTGGAACACATGCTGCTCTATCTCCATGACAACT
AACGCATCATCATGTCATTAAGTTATCAGGTTTTAAGGCACATACCAAAG
GAAATTATATTGGAACTAAAATCGCAATATTTTTTTCCGTGCCGATAATG
TCAAAAAATGTGCGAACCTGGTTTTCTTGACCTGTGAAACTTTCCCTGAT
TAAATGCCCTTTTTGTACAttccaaattatttttgaaaaaatacactTAG
AGGTCCTTTAAAGTTTCTTAAAACGAATTTGATGTTTTAACAAGAGTCGA
GATAATTATCTTTGCAAAAAACAAGAGGTTTTTGTAGTAAGAGAAAGAGA
GAACGATTATCATAGCATAGCACTGACGTCTAAGTTGTTATGACAACCTA
AATCATAAATATTTATGATAAGTCTTTTGTCAATGATTGTTCAAAGACAA
TAGCTTCCTTATAAGGCACAATACGGTTGGAAAATAAGACAGAAACCATA
AAACTGGGAAACGAGAACGAAAAGTTCAGTTCATGAATAGAGCGAGAGAG
TTCGGTCAAGTTCGTTTTTGAAAAGTCGGCAGCGGATATTAGACTAAGTG
AAACATTTACAGATGACCTGGAGCGCGAATATGATTCCACTAAATGATGG
AACAGATTTGAGGGTTTCTTCTATGATCGATCGCATACCTAATCTACCAT
GCTCAGATTCACAAGTATCTTGTATGCCAGATGAAAAAGTTTACACATCA
CAACAAATCACCGTCAATAGCTCAACTCCGAATAACGAAGACTGGCGAAC
GGTAAGACTCGCTTCTCGTTTTTTTCTCgactatttttttctttctctaa
ttttttcttactttcttaTTTTAGTTAGTTCCATGTTCCTGTTAGTTCCA
TCTCAATCTTGAAATGTATCTTAAGTGATGGAAATACTTTTCTGTAGAGA
AATCATGTCACGGTTAAAGCAACCTTGAATGTTAgaacttgaattttttt
gttttttactttcTCTTTTTGATGTTAAAGTACCATAACAGCGTGTGCTA
GCTAAgtcaaataaataaacaaacatGAAGCTACCCCTCAGAGatcagat
ttttttgttttctcttaaCCTTTCAACGTTACACTTAATTTCCATAACAA
CACTACATACAAATTCTTGCTTCAAAACACCGTTGAACTTATTATGAAGG
CATTCTCATTATAATGACATGACATTtctttaattaatttttctcctttt
gaATTGCTTTCTCCTATTGTCCTAATGCCGCTTAATGACAGCTTTTTGCA
AATTAAATACAATAATGAGGCATCATTTGTTTTGCTTTTCCTTGCATTAA
TCACCAGTTTGAAGAGAGGGGCACTTCGAGCTCAAAATGTTCTTTCTAGC
CTCGAGAAAGCCTTCGTTAAGAAAAAGTAGCTACTATAAATTTTTAATTG
ATCCTTTAGTTTTAAGTTTAGTAGTAAGATTAAGAATTCTATTCCATTTG
TTTCTGTTGGATAGCTCCCTTCGTGAAAGGGAGAGTTCCATAACTTTctt
ctgaattttttgatgtgcagaaaaagaacaaaacatgaCGAAATTTACTT
TTCTCTTCTTTACAGACTTTGAATGAGATGGACGTATACCTTGCTGAGGA
CGAATTCACTCgtcaaaatgttttcaacaGATCACCAAATAAACCAGTTT
GTCTACCTACTTCAACCATTGTTTCAACACGCCAGCGACGCCCATCCGTC
GGCCGTGTGGAAGAATTTTGCAGTGAAAGCGAAAGTGATTCTTCTTCTAC
AACATACGATGAACCAATGCATGAAAGCAATTCCCTCATAGAACACGAGC
AAACACCAATGGGAAGCCCTGTTTTTCACTGTGCTTCAAACACCGTCAAA
ACAGAAGTACCTCCGACTTATTTCGAAAGTATGAAATGTGAGCCCACCAG
CCCTTCAACCATTTTTACCTCCACCACGACACTTTTCTCACAAAAACTTA
ACAATACAACATCTTCTCTACAAAAATCATTCATCAATCAACCTCCAATC
AACGTTCGTCCGCCACCTTACCTAGATGCAGCCACTATGGCTGCTAAACG
TCAAACATATCGACAAACAATACCTACAACGAGAGCATTTCCCATCAACT
TTAGTTGTGCTCCACTTAGAGACACTCAAAGtgaaatcatcaaaaataag
aaaacacaTAGATGCGATTATCCAAACTGCAATAAAGTATACACAAAATC
GTCGCACTTGAAAGCTCATTTCCGTACACATACCGGTGAAAAACCGTACG
AATGTCAATGGGAAGGCTGTGATTGGAAGTTTGCTCGATCTGACGAGCTG
ACGAGGCATTANAAAAGCCTTCGTTAAGAAAAAGTAGCTACTATAAATTT
TTAATTGATCCTTTAGTTTTAAGTTTAGTAGTAAGATTAAAAATTCTATT
CCATTTGTTTCTGTTGGATAGCTCCCTTCGTGAAAGGGAGAGTTCCATAA
CTTTCTTCTGAATTTTGTGATGTGcagaaaaagaacaaaacatgaCGAAA
TTTACTTTTCTCTTCTTTACAGACTTTGAATGAGATGGACGTATACCTTG
CTGAGGACGAATTCACTCgtcaaaatgttttcaacaGATCACCAAATAAA
CCAGTTTGTCTACCTACTTCAACCATTGTTTCAACACGCCAGCGACGCCC
ATCCGTCGGCCGTGTGGAAGAATTTTGCAGTGAAAGCGAAAGTGATTCTT
CTTCTACAACATACGATGAACCAATGCATGAAAGCAATTCCCTCATAGAA
CACGAGCAAACACCAATGGGAAGCCCTGTTTTTCACTGTGCTTCAAACAC
CGTCAAAACAGAAGTACCTCCGACTTATTTCGAAAGTATGAAATGTGAGC
CCACCAGCCCTTCAACCATTTTTACCTCCACCACGACACTTTTCTCACAA
AAACTTAACAATACAACATCTTCTCTACAAAAATCATTCATCAATCAACC
TCCAATCAACGTTCGTCCGCCACCTTACCTAGATGCAGCCACTATGGCTG
CTAAACGTCAAACATATCGACAAACAATACCTACAACGAGAGCATTTCCC
ATCAACTTTAGTTGTGCTCCACTTAGAGACACTCAAAGtgaaatcatcaa
aaataagaaaacacaTAGATGCGATTATCCAAACTGCAATAAAGTATACA
CAAAATCGTCGCACTTGAAAGCTCATTTCCGTACACATACCGGTGAAAAA
CCGTACGAATGTCAATGGGAAGGCTGTGATTGGAAGTTTGCTCGATCTGA
CGAGCTGACGAGGCATTATCGTAAACATACTGGCGACAAACCATTCAAAT
GTGCACATTGCGATAAAGCTTTTTCACGATCAGATCACTTAGCTCTTCAC
AATAGAAAGCATACCAACCAAAACCATTAAAATGAAAACGATGAATGatg
aaaaaacaataaaacgaAAAATTAAGCTGGATTTGATTTTAGTTTCTTAG
AAGTTTGACAAAATGTACTTTGTTGCTTTATGCAACTCTCCTTATTTTCG
AGGTTGGGCGGAGAGCCCGCGATGCCTTCTTTGTGTTCTGGTTTCTCCGC
CCTCCCGCCATAGTTAGTATTTTTCTGTTTAAAAGTTTATATTGTATATA
GTATAGAGTATGAAAAAGCAAACCTTAATGAACATTTTTGTAAGTATTTG
TACATAACAACAAAATCgagaattttttcttataacaaaacttTAACGCA
GATATTATAAATAGATTTTATGAGCCACTACACTGCTACCACAGCAGTTA
GTCAAAATAACTTACTTTGtttcaaaatagaaatagaaaattgaagaaat
gaaaaataagtttgttatTTACATCCTTAACTCTGGTCATTCCCGCCCCA
GCGaaacaatttatttttgtcCCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054781-exon-scaffold_245-1491911889:472155..473205 | TCONS_00054781-exon-scaffold_245-1491911889:472155..473205 | Clytia hemisphaerica | exon |
| TCONS_00054781-exon-scaffold_245-1510915933:472155..473205 | TCONS_00054781-exon-scaffold_245-1510915933:472155..473205 | Clytia hemisphaerica | exon |
| TCONS_00054781-exon-scaffold_245-1575043694:472155..473205 | TCONS_00054781-exon-scaffold_245-1575043694:472155..473205 | Clytia hemisphaerica | exon |
| TCONS_00054781-exon-scaffold_245-1491911889:474977..476329 | TCONS_00054781-exon-scaffold_245-1491911889:474977..476329 | Clytia hemisphaerica | exon |
| TCONS_00054781-exon-scaffold_245-1510915933:474977..476329 | TCONS_00054781-exon-scaffold_245-1510915933:474977..476329 | Clytia hemisphaerica | exon |
| TCONS_00054781-exon-scaffold_245-1575043694:474977..476329 | TCONS_00054781-exon-scaffold_245-1575043694:474977..476329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_245 | supercontig | scaffold_245:472155..476329 + |
Blast
BLAST of TCONS_00054781 vs. Swiss-Prot (Human)
Match: KLF5 (Krueppel-like factor 5 OS=Homo sapiens GN=KLF5 PE=1 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 3.811e-47 Identity = 83/140 (59.29%), Postives = 105/140 (75.00%), Query Frame = 2
Query: 1487 NVRPPPYLDAATMAAKRQTYRQTIPTTRAFPINF-SCAPLRDTQ--SEIIKNKKTHRCDYPNCNKVYTKSSHLKAHFRTHTGEKPYECQWEGCDWKFARSDELTRHYRKHTGDKPFKCAHCDKAFSRSDHLALHNRKHTN 1897
N+ PPP AAT+A+K + +PTT P+N + P+R + + ++ ++ H CDYP C KVYTKSSHLKAH RTHTGEKPY+C WEGCDW+FARSDELTRHYRKHTG KPF+C C+++FSRSDHLALH ++H N
Sbjct: 321 NLTPPPSY-AATIASKLAIHNPNLPTT--LPVNSQNIQPVRYNRRSNPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 457
The following BLAST results are available for this feature:
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