TCONS_00054426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054426
Unique NameTCONS_00054426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054426 ID=TCONS_00054426|Name=TCONS_00054426|organism=Clytia hemisphaerica|type=transcript|length=585bp
CCAGAAAATGATTTGCTCGATTTACCAAAAGGAAAAGATTTACTTGACCA
AGAATACATCTTTGATGACTTATGGGAAAAAGTGAAATCTGCAGCCAGCA
GATTGGTCGATTCAGTAAAAGCATCAACACAAAAAATCATCGAACAATAT
AAACCTCAAATCCTTGCTGctttggaaaatgtcaaaaaagttgtcattaa
aggAGTCAAAGACTTGATCCTCGAAGTTGTCAATGGAATTGTCAAAATCA
TTATCGATGGTGTATCTTCAACATCAGATGGCAAAGATCATCCAGAATTT
GATCTTGTTTCATTTCCGATCTTTGAAGTAATTGATAGCTCTTCCATTCC
AACAATCAACTTTGTTACTGATGCATGGAAGAAAGTCACCGATGCTTTCG
AAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAA
TACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATAAT
TGACGAGGGAAAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGA
TTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTT
Run BLAST on NCBI

transcript from alignment at scaffold_242:1609301..1611050-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054426 ID=TCONS_00054426|Name=TCONS_00054426|organism=Clytia hemisphaerica|type=transcript|length=1750bp|location=Sequence derived from alignment at scaffold_242:1609301..1611050- (Clytia hemisphaerica)
CCAGAAAATGATTTGCTCGATTTACCAAAAGGAAAAGATTTACTTGACCA
AGAATACATCTTTGATGACTGTAAGTTAAATATTAAAGTAGTTTAGAAAT
TACCAACATGTTCTTGAAAGGACCAATTTGTTGTGGCAAACAATCTAAGT
AAATCCTAAAGACAGAGATTCTGTGGGAACCTTTGTGGAATTTCATTTGA
TGTACATAAATTAAAGTCAGAACTGATATTTTTTTTCAAATAATTATTAC
AGTATGGGAAAAAGTGAAATCTGCAGCCAGCAGATTGGTCGATTCAGTAA
AAGCATCAACACAAAAAATCATCGAACAATATAAACCTCAAATCCTTGCT
GCTTTGGAAAATGTCAAAAAAGTTGTCATTAAAGGAGTCAAAGACTTGAT
CCTCGAAGTTGTCAATGGAATTGTCAAAATCATTATCGATGGTGTATCTT
CAACATCAGATGGCAAAGATCATCCAGAATTTGATCTTGTTTCATTTCCG
ATCTTTGAAGTAATTGATAGCTCTTCCATTCCAACAATCAACTTTGTTAC
TGATGGTACGTAATTTTGACGGTTCAAACTTGTTTCCTGCTCGCCTCTGA
AATAAAAAAATAGATAAGTTGCAAATACTTTTTCAAAATCATGTAATATT
AATTCTATCTTCAAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAA
AAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATA
CAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTG
ACGAGGGAAAGAGAATCGTTATTGAAATCATTGGTGATATTGTCAAGATT
GTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCT
TTCCGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAATGTA
AAGATGATATTTTATTCACAAAAACACAAATCCTATCCGGGGTCTAAGAT
TACTCAAATAATTCCGGTTTTTAAAGAGCCAAAACAACTTTCCCAATTAG
AAAACGTTATAGTAGTCTTGAAAACCTTTCAAAGAAATCTCTATCAATTT
TCTCTTTAGTATGGGAAAAGGTGAAAACTGCAGCCAACAGATTGTTCGAT
TCAGTAAAAGCAACAACACAAAAAATCATCGAACTATACAAACCTCAAAT
CCTTGCTGCTTTGGAAAATGTCCAAAAAGTTGTCATCAAAGGAGCAAAAG
ATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGATGGT
GTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTGTCTC
ATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATCAATT
TTGTTACCGATGGTAAGTTATTTTGACGATTCGAACTTGTTTTCCTGTTA
GTCTCTGTAATAAAGAAAATAATCAAAATAGATCAATTGCAAATACCTTT
TTCAAAATCATAATATTAATTTTATCTTCAAATTTCAGCATGGAAGAAAG
TCACCGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGA
GCTTTGATCGAGAAATACAAACCAAAAGTAACAGATGCTTTGACCAGAGT
CAAGAAAGTGATAATTGACGAGGGAAAGAGAATCGTTATTGAAATCATCG
GAGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034299XLOC_034299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054426-exon-scaffold_242-1575043694:1610981..1611050TCONS_00054426-exon-scaffold_242-1575043694:1610981..1611050Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1575043694:1610496..1610798TCONS_00054426-exon-scaffold_242-1575043694:1610496..1610798Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1575043694:1609301..1609512TCONS_00054426-exon-scaffold_242-1575043694:1609301..1609512Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1510915933:1610981..1611050TCONS_00054426-exon-scaffold_242-1510915933:1610981..1611050Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1510915933:1610496..1610798TCONS_00054426-exon-scaffold_242-1510915933:1610496..1610798Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1510915933:1609301..1609512TCONS_00054426-exon-scaffold_242-1510915933:1609301..1609512Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1491911889:1610981..1611050TCONS_00054426-exon-scaffold_242-1491911889:1610981..1611050Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1491911889:1610496..1610798TCONS_00054426-exon-scaffold_242-1491911889:1610496..1610798Clytia hemisphaericaexon
TCONS_00054426-exon-scaffold_242-1491911889:1609301..1609512TCONS_00054426-exon-scaffold_242-1491911889:1609301..1609512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1609301..1611050 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.132001	0.010873	0	0	0	0	0.05051	0.0867275	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.265926	0.323567	0.51935	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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