TCONS_00054418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054418
Unique NameTCONS_00054418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054418 ID=TCONS_00054418|Name=TCONS_00054418|organism=Clytia hemisphaerica|type=transcript|length=2384bp
AAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGA
TGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTG
TCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATC
AATTTTGTTACCGATGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGC
TGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAAC
CAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAG
GGAAAGAGAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGT
TGAAGATCTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAG
AAGATTCTGAATTGATGGATGCTGAATTCTTTTTCTCTGAATTATGGGAA
AAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCTACAAC
ACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTttggaaa
atgtccaaaaagtTGTCATCAAAGGAGTCAAAGATTTGATCATCGAAGTT
GTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACATCAGA
TGGCAAAGACCATCCAGAGTTTGCTATTGTCTCATTTTCAATCTTTGAAG
AGATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACTGATGCATGG
AAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCA
AACCAGAGCTTTGGTCGAGAAATACAAACCAAAAGTAACAGATGCTTTGA
CCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAAAGAATCGTTATTGAA
ATCATTGGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGA
GATTGTTAGAGAGCTTGCTGCTCTTCCAGAAGATTCTGAATTGATGGATG
CTGAATTCTTCTTCTCTGAATTATGGGAAAAGGTGAAAACTGCAGCCAAC
AGCTTGGTCGATTCAGTAAAAGcaacaacacaaaaaatcaTCGAACAATA
CAAACCTCAAATACTTGCTGCTTTGGAAAATGTCCAGAAAGTTATCATCA
AAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATC
ATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTT
TGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTC
CAAGAATCAATTTTGTTACCGATGCATGGAAAAAAGTCACAGATGCTTTC
GAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGAGAA
ATACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCA
TTGACGAGGGAAAGAGAATCGTTATTGAAATCATAGGTGATATTGTCAAA
ATTGTTGTTGGAGATCTTTCAGAGGACAAAATTGTGTTGGccaaaagaaa
cattttaaccGATTTATGGCAAAAAGTGAAATCCGCAGCTCAACACTTAT
CATCTCAAATCAGAACATACGCCGAAAAGATGCTTCAGAAATACCGACCA
CAGATCATGACCACCTTAAAGGTTGTTGGTGAAGTCGTCATCGATCAAGT
CCGCAAAATCATCATTCGCATTATCAAAGATGGTATTGTAGGTATTTTCG
TGAACGGTGAGGCAGTGACATCTGATGGCAGTGCTTTTATGTTGCCAGAG
AAAAGGATTTACGCTGTTTTGGATCAATCACCACCTCAAATCAACATCTT
CAAGGATGCTTGGTCAAAGGTCAAGGCTTTCGTTGAAGACAAGGTGAACA
AGATCAGCTCAAGCGTGAAAGCCATCATCGAGAAATATCGTCCACAGATT
GAAGAAGGTTTGGAGAAAGCCAAGAAGATCGTCATCAAACACGGAAAATT
GATCATTATCGAAATCATTGGTGTCGTCATCTCCATCATCGTTCTTTAAA
CGTCCTGATAACGTccataacgttagatgaatgttgaaacaacgtcctGC
TAACGTCCATCTCTTCTTATCAATACCGATTCTATTGGAGAAGAAgatgg
aaagaaattttgatttatttttaaatatatttttgtgttttttagtATTC
TTGTCGATTCTATTTGAAGATTCGTCACTTTTTTAGGAACAAAAAAGAGA
AATAGTCTTGTTAAATAAATGGTGTTCGGTAGTAATCTCCCAACTCCCAA
TATTTTTCCAACAACTTCAACTTTTACCTCAAGTTAAtgtaaattttccc
ttttttcgaGTGTCGCGTATAGAATTTGTCGTca
Run BLAST on NCBI

transcript from alignment at scaffold_242:1602410..1608069-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054418 ID=TCONS_00054418|Name=TCONS_00054418|organism=Clytia hemisphaerica|type=transcript|length=5660bp|location=Sequence derived from alignment at scaffold_242:1602410..1608069- (Clytia hemisphaerica)
AAAGATTTGATCATCGAAGTTGTCAATGGAATTGTCAAAATCATTACTGA
TGGTGTATCTTCAACATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTG
TCTCATTTTCAATCTATGAAGAAATTGATAGCTCTTCCATTCCAAGAATC
AATTTTGTTACCGATGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCT
GTTAGTCTCTGTAATAAAGAAAATAATCAAAATAGATAAATTGCAAATAC
CTTTTTCAAAATCATAATACTAATTTCATCTTCAAATTTCAGCATGGAAG
AAAGTCACTGATGCTTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAAC
CAGAGCTTTGATCGAGAAATATAAACCAAAAGTAACAGATGCTTTGACCA
GAGTCAAGAAAGTGATCATTGACGAGGGAAAGAGAATCGTTATTGAAATC
ATTGGTGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATGAGAT
TGTTAGAGAGCTTGCTGCTCTTTCAGAAGATTCTGAATTGATGGATGCTG
AATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACACAAA
TCCTGCTCTCTTGATCTAAAGTTATTAGAATTACTCCGATTTTAAAGAGC
CAAAAAAACATTCCCAATGAGAAAAAATTATAGTAGTCTTGAAAACCTTT
CAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAATCT
GCAGCTAACAGATTGATCGACTCAGTAAAAGCAACAACACAAAAAATCAT
CGAACAGTACAAACCTCAAATCCTTGCTGCTTTGGAAAATGTCCAAAAAG
TTGTCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAATT
GTCAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATCA
CCCAGAGTTTGCTGTTGTCTCATTTTCAATCTATGAAGAAATTGATAGCT
CTTCCATTCCAAGAATCAATTTTGTTACCGATGGTAAGTTATTTTGACGA
TTCGAACTTGTTTTCCTGTTAGTCTCTGTAATAAAGAAAATAATCAAAAT
AGATCAATTGCAAATACCTTTTTCAAAATCATAATATTAATTTCATCTTC
AAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGAGAC
AAGATTAGCAACCAAACCAGAGCTTTGATCGAGAAATACAAACCAAAAGT
AACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAAAGA
GAATCGTTATTGAAATCATCGGAGATATTGTCAAGATTGTTGTTGAAGAT
CTTCAAGAGGATGAGATTGTTAAAGAACTTGCTGCTCTTTCAGAAGATTC
TGAATTGATGGATGCTGAATTCTTTTTCTCTGAATGTAAGATAATATTTT
ATTCACAAAAACACAAATCCTATCCGGGGTCTAATATTTCTCAAATAATT
CCGGTTTTTAAAGAGCCAAAAAAACTTTCCCAATGAGAAAACGTTATAGT
AGTCTTTAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGTATG
GGAAAAGGTGAAAGCTGCAGCCAACAGCTTGGTCGATTCAGTAAAAGCTA
CAACACAAAAAATCATCGAACAATACAAACCTCAAATCCTTGCTGCTTTG
GAAAATGTCCAAAAAGTTGTCATCAAAGGAGTCAAAGATTTGATCATCGA
AGTTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAACAT
CAGATGGCAAAGACCATCCAGAGTTTGCTATTGTCTCATTTTCAATCTTT
GAAGAGATTGATGGCTCTTCCATTCCAAGAATCAACTTTGTTACTGATGG
TAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTTTGTCTGTGTAATAA
AGAAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCATAT
AATATTAATTCCATCTTCAAATTTCAGCATGGAAAAAAGTCACTGATGCT
TTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCGA
GAAATATAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGA
TCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATTGGTGATATTGTC
AAGATTGTTGTTGAAGATCTTCAAGAGGATGAGATTGTTAGAGAGCTTGC
TGCTCTTTCAGAAGATTCTGAATTGATGGATGCTGAATTCTTCTTCTCTG
AATGTAAGANGATATTGTCAAGATTGTTGTTGAAGATCTTCAAGAGGATG
AGATTGTTAAAGAACTTGCTGCTCTTTCCGAAGATTCTGAATTGATGGAT
GCTGAATTCTTCTTCTCTGAATGTAAGATAATATTTTATTCACAAAAACA
CAAATTCTATCCGGGTTCTGTTCTCTTAAATAATTCCGGTTTTTAAAGAG
CCAAAAAAACTTTCCCAATGAGAAAACGTTATAGTAGCCTTGAAAACCTT
TCAAAGAAATCTCTATCAATTTTCTCTTTAGTATGGGAAAAGGTGAAAAC
TGCAGCCAACAGATTGGTCGATTCAGTAAAAGCAACAAAACAAAAAATCA
TCGAACAATACAAACCTCAAATCCTTGCTGCTTTGAAAAATGTCCAGAAA
GTTATCATCAAAGGAGCAAAAGATTTGATCATCGAAGTTGTCAATGGAAT
TGTCAAAATCATTACTGATGGTGTATCTTCAACATCAGATGGCAAAGATC
ACCCAGAGTTTGCTGTTGTTTCATTTTCAATCTTTGAAGTAATTGATGGC
TCTTCCATTCCAAGAATCAACTTTGTTACCGATGGTAAGTTATTTTGACG
ATTCAAACTTGTTTTCCTGTTTGTCTCTGTAATAAAGAAAATAATCAAAA
TAGATCAATTGCAAATACCTTTTTCAAAATCATATAATATTAATTCCATG
TTCAAATTTCAGCATGGAAGAAAGTCACCGATGCTTTCGAAAAAGCTGGA
GACAAGATTAGCAACCAAACCAGAGCTTTGGTCGAGAAATACAAACCAAA
AGTAACAGATGCTTTGACCAGAGTCAAGAAAGTGATCATTGACGAGGGAA
AAAGAATCGTTATTGAAATCATTGGTGATATTGTCAAGATTGTTGTTGAA
GATCTTCAAGAGGATGAGATTGTTAGAGAGCTTGCTGCTCTTCCAGAAGA
TTCTGAATTGATGGATGCTGAATTCTTCTTCTCTGAATGTAAGATAATAT
TTTATTCACAAAAACACAAATCCTATCCGGGGTCTAAGATTACTCAAATA
ATTCCGGTTTTTAAAGAGCCAAAAAAACTTTCTCAATTAGAAAACGTTAT
AGTAGTCTTGAAAACCTTTCAAAGAAATCTCTATCAATTTTCTCTTTAGT
ATGGGAAAAGGTGAAAACTGCAGCCAACAGCTTGGTCGATTCAGTAAAAG
CAACAACACAAAAAATCATCGAACAATACAAACCTCAAATACTTGCTGCT
TTGGAAAATGTCCAGAAAGTTATCATCAAAGGAGCAAAAGATTTGATCAT
CGAAGTTGTCAATGGAATTGTCAAAATCATTACTGATGGTGTATCTTCAA
CATCAGATGGCAAAGATCACCCAGAGTTTGCTGTTGTCTCATTTTCAATC
TATGAAGAAATTGATAGCTCTTCCATTCCAAGAATCAATTTTGTTACCGA
TGGTAAGTTATTTTGACGATTCAAACTTGTTTTCCTGTTAGTCTCTGTAA
TAAAGAAAATAATCAAAATAGATCAATTGCAAATACCTTTTTCAAAATCA
TAATATTAATTTCATCTTCAAATTTCAGCATGGAAAAAAGTCACAGATGC
TTTCGAAAAAGCTGGAGACAAGATTAGCAACCAAACCAGAGCTTTGATCG
AGAAATACAAACCAAAAGTAACAGATGCTTTGACCAGAGTCAAGAAAGTG
ATCATTGACGAGGGAAAGAGAATCGTTATTGAAATCATAGGTGATATTGT
CAAAATTGTTGTTGGAGATCTTTCAGAGGACAAAATTGTGTTGGCCAAAA
GAAACATTTTAACCGATTGTGAGTACTACATAATCCTAACATTTAAATAA
TATCTAAAGTAATATTCCAAACTAGATACCATCTTCAAATTGAGTTGATT
CTTTGACAACATCTTTGAGTATAAATCTAATAATTTCAGAAAATTACAGT
CGAATCTCCATAACTCGAACCTCCATCCTTTGAATGTCTCCTTAACTCGA
ACCAGTTTACCGTTCCTTTCAGATAAGAAACCCCAGTAAACAATTCACCA
TAACTCGAACTTTCCATAACTCGAACTAATTTGCTTGCCCTGTGCGTGTT
CGAGTTATGAAGAATCAAAAGACCTTTTTATAAATTACGTCACAAACAAC
ACTTGCCTCGTTTTAAAATTATTGCCATGGTGATTAACTCCCAGCGGATT
TTATTAAAACTAATTTCTATTCATAAAAGGATCACCACGGTAATTATTTG
AATACGAGGCAAGTGATGTTCCTGAGGTAATTTATGAAAAAGTCTATTGT
ATCTAGAAAAATATGTTCTTAAGCTAAAATAATGTGTCCTTTAATTTTGT
AGTATGGCAAAAAGTGAAATCCGCAGCTCAACACTTATCATCTCAAATCA
GAACATACGCCGAAAAGATGCTTCAGAAATACCGACCACAGATCATGACC
ACCTTAAAGGTTGTTGGTGAAGTCGTCATCGATCAAGTCCGCAAAATCAT
CATTCGCATTATCAAAGATGGTATTGTAGGTATTTTCGTGAACGGTGAGG
CAGTGACATCTGATGGCAGTGCTTTTATGTTGCCAGAGAAAAGGATTTAC
GCTGTTTTGGATCAATCACCACCTCAAATCAACATCTTCAAGGATGGTAA
GTGTTTATAACTTTCACAAAAAATCGATGGGGATCGATGGTCGATAAAGA
CATAAATGTTGTCATCAATTTCATAACTGTTCAATTTAATCTCCCAGATT
TAATTAGAAGCAGTTCAACGAGTACCAACTATATAGTTACCATTAAATGC
CAACAAGTTTTGAATCCATTTCACTTTCTTCCAGCTTGGTCAAAGGTCAA
GGCTTTCGTTGAAGACAAGGTGAACAAGATCAGCTCAAGCGTGAAAGCCA
TCATCGAGAAATATCGTCCACAGATTGAAGAAGGTTTGGAGAAAGCCAAG
AAGATCGTCATCAAACACGGAAAATTGATCATTATCGAAATCATTGGTGT
CGTCATCTCCATCATCGTTCTTTAAACGTCCTGATAACGTCCATAACGTT
AGATGAATGTTGAAACAACGTCCTGCTAACGTCCATCTCTTCTTATCAAT
ACCGATTCTATTGGAGAAGAAGATGGAAAGAAATTTTGATTTATTTTTAA
ATATATTTTTGTGTTTTTTAGTATTCTTGTCGATTCTATTTGAAGATTCG
TCACTTTTTTAGGAACAAAAAAGAGAAATAGTCTTGTTAAATAAATGGTG
TTCGGTAGTAATCTCCCAACTCCCAATATTTTTCCAACAACTTCAACTTT
TACCTCAAGTTAATGTAAATTTTCCCTTTTTTCGAGTGTCGCGTATAGAA
TTTGTCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034299XLOC_034299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054418-exon-scaffold_242-1575043694:1607904..1608069TCONS_00054418-exon-scaffold_242-1575043694:1607904..1608069Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1575043694:1606635..1606910TCONS_00054418-exon-scaffold_242-1575043694:1606635..1606910Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1575043694:1606171..1606473TCONS_00054418-exon-scaffold_242-1575043694:1606171..1606473Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1575043694:1604782..1605057TCONS_00054418-exon-scaffold_242-1575043694:1604782..1605057Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1575043694:1604318..1604620TCONS_00054418-exon-scaffold_242-1575043694:1604318..1604620Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1575043694:1603952..1604191TCONS_00054418-exon-scaffold_242-1575043694:1603952..1604191Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1575043694:1603124..1603417TCONS_00054418-exon-scaffold_242-1575043694:1603124..1603417Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1575043694:1602410..1602935TCONS_00054418-exon-scaffold_242-1575043694:1602410..1602935Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1607904..1608069TCONS_00054418-exon-scaffold_242-1510915933:1607904..1608069Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1606635..1606910TCONS_00054418-exon-scaffold_242-1510915933:1606635..1606910Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1606171..1606473TCONS_00054418-exon-scaffold_242-1510915933:1606171..1606473Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1604782..1605057TCONS_00054418-exon-scaffold_242-1510915933:1604782..1605057Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1604318..1604620TCONS_00054418-exon-scaffold_242-1510915933:1604318..1604620Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1603952..1604191TCONS_00054418-exon-scaffold_242-1510915933:1603952..1604191Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1603124..1603417TCONS_00054418-exon-scaffold_242-1510915933:1603124..1603417Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1510915933:1602410..1602935TCONS_00054418-exon-scaffold_242-1510915933:1602410..1602935Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1607904..1608069TCONS_00054418-exon-scaffold_242-1491911889:1607904..1608069Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1606635..1606910TCONS_00054418-exon-scaffold_242-1491911889:1606635..1606910Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1606171..1606473TCONS_00054418-exon-scaffold_242-1491911889:1606171..1606473Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1604782..1605057TCONS_00054418-exon-scaffold_242-1491911889:1604782..1605057Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1604318..1604620TCONS_00054418-exon-scaffold_242-1491911889:1604318..1604620Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1603952..1604191TCONS_00054418-exon-scaffold_242-1491911889:1603952..1604191Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1603124..1603417TCONS_00054418-exon-scaffold_242-1491911889:1603124..1603417Clytia hemisphaericaexon
TCONS_00054418-exon-scaffold_242-1491911889:1602410..1602935TCONS_00054418-exon-scaffold_242-1491911889:1602410..1602935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:1602410..1608069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0606649	0	0.0725654	0.126372	0	0.0671514	0.0332521	0.0629938	0.0714894	0.0630214	0	0	0	0.0472775	0	1.39994	1.54794	0.987021	1.72815	3.55184	3.12344	26.107	36.0453	5.59025	4.59366	0	0	0	0.148713
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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