TCONS_00053677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053677
Unique NameTCONS_00053677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053677 ID=TCONS_00053677|Name=TCONS_00053677|organism=Clytia hemisphaerica|type=transcript|length=1397bp
TATAAATCGACTGAAATTGTTACCGTAATCAAATCTTTTGGAAGGGATAA
CAGAATTCCAAACCTTTCCTACAATGATATGACGATTGGTATTTATTTTA
ATAGAAGAAATTACAAAACATATATCGCGATGAGTTTTCGACATGGTATG
AGTGTGGACGACATCACATTGTCGCATATCGAAAAAGCGCACCAAAACAT
GAAAGACTTATCCAGCACACTCTTCATAGAGACACCATTGGTCCATGGGA
TGGAGAATCGTTTACGTGGAGAAATTCCCAACGTTGATTCGTTGTCGTTG
aaattggaatgtttacaaagcACCGGCTCTTTCAAAATCCGTGGTGTGGT
CAATCAATTTCTCAACTTACGTGACGAAGATCgacaaaaaaagagaacct
tggTCACCATGTCTGCTGGCAATTATGGGAAAGCTTTTGCGTTCGTTTCG
AATCAAGAACACATGCCAGGTGTTGTGTATATGCCCAACGAAGCACCAAA
GGACCGTCAAACTACAATCGAGTCATACGGCTGTACAGTGAATCTTTCAC
CAGTCCAACAACTCGTGGAAAATGTAAACAATGAAATCGAACGAACCGGT
GGAATGTATTTTCATTCTTATGATGATCCTTTCCTTATTCTTGGAAACGC
CAGTGCAGGTATGGAATTGATGGCCCAGACTTCGCGACAACAGCAACCAG
ATATCGTATTGGTGTGCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCT
GCCGCTCTCAAACTATCTGATGGTTGGAAAGATACAAGAATTTATGGTGT
CGAAGCAGAGAATGtGCCGAAAATGTACGAAGCGTTGAAAGCTGATGGCC
CAGTGCCATTCAATCGAAAGCCAACCATCGCGACGGGTCTCGCCCCTCCT
ACCGCTGgtgaGATGACTTACAAGATGATCAAGAAATACACTGAAGGGAT
TCTCCTTGTCTCTGAAGATGAACTCAAAAGGGCAATGAAGACATTGTTTA
GTCTTGGTTTGGTGGTTGAGCCGTCAGGTGCGGCTGCGTTCGCTGCGCTG
CAATCGAATAAAGTACCGGAAGCCGAAGGGAAGAAAGTGACGGTGATTGT
GACCGGTGGAAATGTCACTCTTAAAGATCTCACTCAACACATTGGACTGT
GAaaaacatgaattttttttagtaCGAATAGTTTTCAGGCCAGCAGAAAA
tatatttgatgaaatttgtaatCCAGCTCCTTTTTTAATACTAGATCCAT
ATATTATATAAATACACCATTCACAGACAGATTTAATGTTGGTTCGTTTA
AAGTTTCTCAGGCGATATCATTCGACTTCGACTAATCAGATAGTTTAAAG
TTTCCCTGTCTACAATCTACTGTCCCCTCGTTAAGAAGATAAAACAA
Run BLAST on NCBI

protein sequence of TCONS_00053677-protein

>TCONS_00053677-protein ID=TCONS_00053677-protein|Name=TCONS_00053677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
YKSTEIVTVIKSFGRDNRIPNLSYNDMTIGIYFNRRNYKTYIAMSFRHGM
SVDDITLSHIEKAHQNMKDLSSTLFIETPLVHGMENRLRGEIPNVDSLSL
KLECLQSTGSFKIRGVVNQFLNLRDEDRQKKRTLVTMSAGNYGKAFAFVS
NQEHMPGVVYMPNEAPKDRQTTIESYGCTVNLSPVQQLVENVNNEIERTG
GMYFHSYDDPFLILGNASAGMELMAQTSRQQQPDIVLVCCGGGGLCAGVA
AALKLSDGWKDTRIYGVEAENVPKMYEALKADGPVPFNRKPTIATGLAPP
TAGEMTYKMIKKYTEGILLVSEDELKRAMKTLFSLGLVVEPSGAAAFAAL
QSNKVPEAEGKKVTVIVTGGNVTLKDLTQHIGL
Run BLAST on NCBI

transcript from alignment at scaffold_233:689437..693409-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053677 ID=TCONS_00053677|Name=TCONS_00053677|organism=Clytia hemisphaerica|type=transcript|length=3973bp|location=Sequence derived from alignment at scaffold_233:689437..693409- (Clytia hemisphaerica)
TATAAATCGACTGAAATTGTTACCGTAATCAAATCTTTTGGAAGGGATAA
CAGAATTCCAAACCTTTCCTACAATGATATGACGATTGGTATTTATTTTA
ATAGAAGAAATTACAAAACATATATCGCGATGAGTTTTCGACATGGTATG
AGTGTGGACGACATCACATTGTCGCATATCGAAAAAGCGCACCAAAACAT
GAAAGACTTATCCAGCACACTCTTCATAGAGACACCATTGGTCCATGGGA
TGGAGAATCGTTTACGTGGAGAAATTCCCAACGTTGATTCGTTGTCGTTG
AAATTGGAATGTTTACAAAGCACCGGTTGGTATGGGAGAGCTCTCGAAGT
GTTTTGAAAGTTTTCCATTCGTCAGGTGGCTCGTCTAGCTCAAGATTTTA
ATAAGAATTATAGAATAGGAGTACTTCCTTATCGGGGAAAAAATGTCGGG
GGAAAGTGACGAAAATGCCTGAAATGGCGAAATTTATCCCCGACGAGAAA
AAACAACCGACTAAATAAAATTCCGACATTTTTTCCCCCGATAAGGTATG
TCTAAAAAAAAAGGAAGGGGAAATCTGAAAAACGCCGTTTTAAGATTTTT
CCTGGTGGTATTGTTGCGAGCTTCCGATGTACGATGCTAGTTATGTCTCA
TTCTTTTCTTTCTCTTCTCTATTTTCAAGAAAGGCTCTTTCAAAATCCGT
GGTGTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCGACAAAAAAA
GAGAACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAGCTTTTGCGT
TCGTTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATGCCCAACGAA
GCACCAAAGGACCGTCAAACTACAATCGAGGTTTGTCCACAGGGTCAAGA
TAATTGAAATTGAAAACGTTGGGCTTATGCAATGCTCCCCGCATTTGATT
GAGGAGGTCTCTGAAATTTCGACTAATATTCAAAGAATTCAACAATTGAA
GAAAAAAATTTTTAAACTAAAACTAAACTAAAATCTCTTTAAAAAGTGAC
CACCTATTGCTGTAAAATAGCACATTCTATATTATAGTCACCAAGTAACT
CAATTTGCTTTCTAATTAATGAAAATGACTTTCGCTTTCAGTCATACGGC
TGTACAGTGAATCTTTCACCAGTCCAACAACTCGTGGAAAATGTAAACAA
TGAAATCGAACGAACCGGTGGAATGTATTTTCATTCTTATGATGATCCTT
TCCTTATTCTTGGAAACGCCAGGTCAGTCTTCTTTCTTTTCTTTTGTTCT
CTTGTCCGAAGGTTTTTGCTCACTTAACTACTTCTTTGTCATTTGCATTT
CATTATCAAAATCAGCTACAATTTCAAATCTTTAACTCCTGCGCTTTTTA
CGTTACTTTACTGGGATAAATTTCCGCGGGGATTGAATTTCGCGGTTCAG
CTCATCCGCGAAATTTCAAGATTTCGCGGGGACTTAATATCTAAATATCT
TTCTAAATTTCCATTGGGACTTAGTTTTGGGGATGACACCCAAATCTGCG
AAATTTAGTCCCCGCGAAAATTTATTTTATTAAAGTAGCCCTTATCGTTC
CTTTTGGGTTGGACGTGGGCTGGCTTAAAAGACAAAACGAGTTTTATAAA
TTGAAAGTTCCAGATTATTGTAGTCGATGTTTGGAAAACTCAAACGGCAA
TCAATCTGAAACCCTCTGATGATACCTATAACATATGGAGACATATTTAT
TTGTTACTCTCTCTATTTTCTGTCACAGTGCAGGTATGGAATTGATGGCC
CAGACTTCGCGACAACAGCAACCAGATATCGTATTGGTGTGCTGTGGAGG
TGGTGGTCTTTGTGCTGGTGTGGCTGCCGCTCTCAAACTATCTGATGGTT
GGAAAGATACAAGAATTTATGGTGTCGAAGCAGAGAATGGTGGGTCATGC
AAGCTTGTGAAATATAAAATTGTGGATTACCTTTAATGATTTTTAGGGAG
CTGTTCTAACAGAAAGGATTGCACACTCTTGTCGTAACGAGGAACCACCT
TCTAAGATTTGAGAACTTTTCTGTATTCTTCATAGTAGAGTATCGACCGT
GTTTTTTTTTATTTCCAGTGCCGAAAATGTACGAAGCGTTGAAAGCTGAT
GGCCCAGTGCCATTCAATCGAAAGCCAACCATCGCGACGGGTCTCGCCCC
TCCTACCGCTGGTATGTAATATGGTATTCTAATCTCTGTCGAAATCAATG
TGTATTTTCAATACGACAATGACTAGTATTTGATAGCTGCACTAGGGAAA
TAATACCAAGACAAAAAAAACACGATTCCGTGTATATTGTATAAAATCGT
GTAAAAAAAATTGCTTGAATTATGTTGGTTAAATTTCTCATTCAGTGAAC
AGGACATGTCAACACTGAAACCGACAGTCAGTTCTTGTTTTTTTCATTTT
CAGGTGAGATGACTTACAAGATGATCAAGAAATACACTGAAGGGATTCTC
CTTGTCTCTGAAGATGAACTCAAAAGGTATCCCTCATAATTCATATTGTA
TGTTTTTCTCAATTGAAAGTAGTAGTAAAAGCTAATATGTAGTATGTTCA
GACTGTATTTGATTAGCCGAGACCAATTTGATTAGTTGTTTGACGCCCCC
CCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGACCGACCTTG
AAATTCCACAAATCGAAATATAAATAAAATTCATTTTGGAAGTACATTTT
TATTTTCATTTGCTTTACAGACTCCAAAATTTTCAAAATTTTGGTAGTTT
TTCAAAAGTTTTGAGAAATTTATATTCAATTTTTCATTTCATCCATGGAA
TCGACCTTTACGTGCCTTCTTATTTTCTTTTGCACATTTTTGTCAAGATG
TAGTAGTTTTGCTGCCTTTTTTAGAAGATTTTAAAGGTGAAATTCTACTT
TTATTTTTATATTTTAAATTGTCCTCGCCTTAGAGAGTTTATATCTAAGT
AAAGTAATAACAAAAACTATAAGTTTATAAATCGTCGAAACAAAGTAAAA
AGATGTGAAAGAAAACATCATCTTTTGGTTTTCTGGTTCATTGTGTAAGG
GAGTTTTTATTGCGATTTAATTTATATCCATCCTCGTGCAAATGGTTAAG
TTGTTGATCGATAAACTAATAACTCCATGCATGTACGACGACCAGTTCCA
TTTCCAAAAGTTGATTTATAAGGAACAAGTCAAGAGAAGAAGAGCATTTT
TACAAAATAACCTAGATAGAAGACCAGAAAGACTTGCTATTCAGGTGAAT
GCATTACTTCGTAAAACATTAACTATCTTTAGATAAAATACCTAAATTTT
CGTACTTTATTGTTACGCGCTCGTCGTCCTTTTTGTTTTGTCATTGTTAC
AAAACAGCATCAAGACATAAGTTGAATCGTTGCTCTTCCATCTCTCATTT
TCACAGGGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTGAGCCGT
CAGGTGCGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCGGAAGCC
GAAGGGAAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCACTCTTAA
AGATCTCACTCAACACATTGGACTGTGAAAAACATGAATTTTTTTTAGTA
CGAATAGTTTTCAGGCCAGCAGAAAATATATTTGATGAAATTTGTAATCC
AGCTCCTTTTTTAATACTAGATCCATATATTATATAAATACACCATTCAC
AGACAGATTTAATGTTGGTTCGTTTAAAGTTTCTCAGGCGATATCATTCG
ACTTCGACTAATCAGATAGTTTAAAGTTTCCCTGTCTACAATCTACTGTC
CCCTCGTTAAGAAGATAAAACAA

Coding sequence (CDS) from alignment at scaffold_233:689437..693409-

>TCONS_00053677 ID=TCONS_00053677|Name=TCONS_00053677|organism=Clytia hemisphaerica|type=CDS|length=8064bp|location=Sequence derived from alignment at scaffold_233:689437..693409- (Clytia hemisphaerica)
GGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTGAGCCGTCAGGTG
CGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCGGAAGCCGAAGGG
AAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCACTCTTAAAGATCT
CACTCAACACATTGGACTGTGAGTGAGATGACTTACAAGATGATCAAGAA
ATACACTGAAGGGATTCTCCTTGTCTCTGAAGATGAACTCAAAAGTGCCG
AAAATGTACGAAGCGTTGAAAGCTGATGGCCCAGTGCCATTCAATCGAAA
GCCAACCATCGCGACGGGTCTCGCCCCTCCTACCGCTGTGCAGGTATGGA
ATTGATGGCCCAGACTTCGCGACAACAGCAACCAGATATCGTATTGGTGT
GCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCTGCCGCTCTCAAACTA
TCTGATGGTTGGAAAGATACAAGAATTTATGGTGTCGAAGCAGAGAATGT
CATACGGCTGTACAGTGAATCTTTCACCAGTCCAACAACTCGTGGAAAAT
GTAAACAATGAAATCGAACGAACCGGTGGAATGTATTTTCATTCTTATGA
TGATCCTTTCCTTATTCTTGGAAACGCCAGGCTCTTTCAAAATCCGTGGT
GTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCGACAAAAAAAGAG
AACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAGCTTTTGCGTTCG
TTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATGCCCAACGAAGCA
CCAAAGGACCGTCAAACTACAATCGAGTATAAATCGACTGAAATTGTTAC
CGTAATCAAATCTTTTGGAAGGGATAACAGAATTCCAAACCTTTCCTACA
ATGATATGACGATTGGTATTTATTTTAATAGAAGAAATTACAAAACATAT
ATCGCGATGAGTTTTCGACATGGTATGAGTGTGGACGACATCACATTGTC
GCATATCGAAAAAGCGCACCAAAACATGAAAGACTTATCCAGCACACTCT
TCATAGAGACACCATTGGTCCATGGGATGGAGAATCGTTTACGTGGAGAA
ATTCCCAACGTTGATTCGTTGTCGTTGAAATTGGAATGTTTACAAAGCAC
CGGGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTGAGCCGTCAGG
TGCGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCGGAAGCCGAAG
GGAAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCACTCTTAAAGAT
CTCACTCAACACATTGGACTGTGAGTGAGATGACTTACAAGATGATCAAG
AAATACACTGAAGGGATTCTCCTTGTCTCTGAAGATGAACTCAAAAGTGC
CGAAAATGTACGAAGCGTTGAAAGCTGATGGCCCAGTGCCATTCAATCGA
AAGCCAACCATCGCGACGGGTCTCGCCCCTCCTACCGCTGTGCAGGTATG
GAATTGATGGCCCAGACTTCGCGACAACAGCAACCAGATATCGTATTGGT
GTGCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCTGCCGCTCTCAAAC
TATCTGATGGTTGGAAAGATACAAGAATTTATGGTGTCGAAGCAGAGAAT
GTCATACGGCTGTACAGTGAATCTTTCACCAGTCCAACAACTCGTGGAAA
ATGTAAACAATGAAATCGAACGAACCGGTGGAATGTATTTTCATTCTTAT
GATGATCCTTTCCTTATTCTTGGAAACGCCAGGCTCTTTCAAAATCCGTG
GTGTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCGACAAAAAAAG
AGAACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAGCTTTTGCGTT
CGTTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATGCCCAACGAAG
CACCAAAGGACCGTCAAACTACAATCGAGTATAAATCGACTGAAATTGTT
ACCGTAATCAAATCTTTTGGAAGGGATAACAGAATTCCAAACCTTTCCTA
CAATGATATGACGATTGGTATTTATTTTAATAGAAGAAATTACAAAACAT
ATATCGCGATGAGTTTTCGACATGGTATGAGTGTGGACGACATCACATTG
TCGCATATCGAAAAAGCGCACCAAAACATGAAAGACTTATCCAGCACACT
CTTCATAGAGACACCATTGGTCCATGGGATGGAGAATCGTTTACGTGGAG
AAATTCCCAACGTTGATTCGTTGTCGTTGAAATTGGAATGTTTACAAAGC
ACCGGGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTGAGCCGTCA
GGTGCGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCGGAAGCCGA
AGGGAAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCACTCTTAAAG
ATCTCACTCAACACATTGGACTGTGAGTGAGATGACTTACAAGATGATCA
AGAAATACACTGAAGGGATTCTCCTTGTCTCTGAAGATGAACTCAAAAGT
GCCGAAAATGTACGAAGCGTTGAAAGCTGATGGCCCAGTGCCATTCAATC
GAAAGCCAACCATCGCGACGGGTCTCGCCCCTCCTACCGCTGTGCAGGTA
TGGAATTGATGGCCCAGACTTCGCGACAACAGCAACCAGATATCGTATTG
GTGTGCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCTGCCGCTCTCAA
ACTATCTGATGGTTGGAAAGATACAAGAATTTATGGTGTCGAAGCAGAGA
ATGTCATACGGCTGTACAGTGAATCTTTCACCAGTCCAACAACTCGTGGA
AAATGTAAACAATGAAATCGAACGAACCGGTGGAATGTATTTTCATTCTT
ATGATGATCCTTTCCTTATTCTTGGAAACGCCAGGCTCTTTCAAAATCCG
TGGTGTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCGACAAAAAA
AGAGAACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAGCTTTTGCG
TTCGTTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATGCCCAACGA
AGCACCAAAGGACCGTCAAACTACAATCGAGTATAAATCGACTGAAATTG
TTACCGTAATCAAATCTTTTGGAAGGGATAACAGAATTCCAAACCTTTCC
TACAATGATATGACGATTGGTATTTATTTTAATAGAAGAAATTACAAAAC
ATATATCGCGATGAGTTTTCGACATGGTATGAGTGTGGACGACATCACAT
TGTCGCATATCGAAAAAGCGCACCAAAACATGAAAGACTTATCCAGCACA
CTCTTCATAGAGACACCATTGGTCCATGGGATGGAGAATCGTTTACGTGG
AGAAATTCCCAACGTTGATTCGTTGTCGTTGAAATTGGAATGTTTACAAA
GCACCGGGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTGAGCCGT
CAGGTGCGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCGGAAGCC
GAAGGGAAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCACTCTTAA
AGATCTCACTCAACACATTGGACTGTGAGTGAGATGACTTACAAGATGAT
CAAGAAATACACTGAAGGGATTCTCCTTGTCTCTGAAGATGAACTCAAAA
GTGCCGAAAATGTACGAAGCGTTGAAAGCTGATGGCCCAGTGCCATTCAA
TCGAAAGCCAACCATCGCGACGGGTCTCGCCCCTCCTACCGCTGTGCAGG
TATGGAATTGATGGCCCAGACTTCGCGACAACAGCAACCAGATATCGTAT
TGGTGTGCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCTGCCGCTCTC
AAACTATCTGATGGTTGGAAAGATACAAGAATTTATGGTGTCGAAGCAGA
GAATGTCATACGGCTGTACAGTGAATCTTTCACCAGTCCAACAACTCGTG
GAAAATGTAAACAATGAAATCGAACGAACCGGTGGAATGTATTTTCATTC
TTATGATGATCCTTTCCTTATTCTTGGAAACGCCAGGCTCTTTCAAAATC
CGTGGTGTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCGACAAAA
AAAGAGAACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAGCTTTTG
CGTTCGTTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATGCCCAAC
GAAGCACCAAAGGACCGTCAAACTACAATCGAGTATAAATCGACTGAAAT
TGTTACCGTAATCAAATCTTTTGGAAGGGATAACAGAATTCCAAACCTTT
CCTACAATGATATGACGATTGGTATTTATTTTAATAGAAGAAATTACAAA
ACATATATCGCGATGAGTTTTCGACATGGTATGAGTGTGGACGACATCAC
ATTGTCGCATATCGAAAAAGCGCACCAAAACATGAAAGACTTATCCAGCA
CACTCTTCATAGAGACACCATTGGTCCATGGGATGGAGAATCGTTTACGT
GGAGAAATTCCCAACGTTGATTCGTTGTCGTTGAAATTGGAATGTTTACA
AAGCACCGGGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTGAGCC
GTCAGGTGCGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCGGAAG
CCGAAGGGAAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCACTCTT
AAAGATCTCACTCAACACATTGGACTGTGAGTGAGATGACTTACAAGATG
ATCAAGAAATACACTGAAGGGATTCTCCTTGTCTCTGAAGATGAACTCAA
AAGTGCCGAAAATGTACGAAGCGTTGAAAGCTGATGGCCCAGTGCCATTC
AATCGAAAGCCAACCATCGCGACGGGTCTCGCCCCTCCTACCGCTGTGCA
GGTATGGAATTGATGGCCCAGACTTCGCGACAACAGCAACCAGATATCGT
ATTGGTGTGCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCTGCCGCTC
TCAAACTATCTGATGGTTGGAAAGATACAAGAATTTATGGTGTCGAAGCA
GAGAATGTCATACGGCTGTACAGTGAATCTTTCACCAGTCCAACAACTCG
TGGAAAATGTAAACAATGAAATCGAACGAACCGGTGGAATGTATTTTCAT
TCTTATGATGATCCTTTCCTTATTCTTGGAAACGCCAGGCTCTTTCAAAA
TCCGTGGTGTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCGACAA
AAAAAGAGAACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAGCTTT
TGCGTTCGTTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATGCCCA
ACGAAGCACCAAAGGACCGTCAAACTACAATCGAGTATAAATCGACTGAA
ATTGTTACCGTAATCAAATCTTTTGGAAGGGATAACAGAATTCCAAACCT
TTCCTACAATGATATGACGATTGGTATTTATTTTAATAGAAGAAATTACA
AAACATATATCGCGATGAGTTTTCGACATGGTATGAGTGTGGACGACATC
ACATTGTCGCATATCGAAAAAGCGCACCAAAACATGAAAGACTTATCCAG
CACACTCTTCATAGAGACACCATTGGTCCATGGGATGGAGAATCGTTTAC
GTGGAGAAATTCCCAACGTTGATTCGTTGTCGTTGAAATTGGAATGTTTA
CAAAGCACCGGGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTGAG
CCGTCAGGTGCGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCGGA
AGCCGAAGGGAAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCACTC
TTAAAGATCTCACTCAACACATTGGACTGTGAGTGAGATGACTTACAAGA
TGATCAAGAAATACACTGAAGGGATTCTCCTTGTCTCTGAAGATGAACTC
AAAAGTGCCGAAAATGTACGAAGCGTTGAAAGCTGATGGCCCAGTGCCAT
TCAATCGAAAGCCAACCATCGCGACGGGTCTCGCCCCTCCTACCGCTGTG
CAGGTATGGAATTGATGGCCCAGACTTCGCGACAACAGCAACCAGATATC
GTATTGGTGTGCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCTGCCGC
TCTCAAACTATCTGATGGTTGGAAAGATACAAGAATTTATGGTGTCGAAG
CAGAGAATGTCATACGGCTGTACAGTGAATCTTTCACCAGTCCAACAACT
CGTGGAAAATGTAAACAATGAAATCGAACGAACCGGTGGAATGTATTTTC
ATTCTTATGATGATCCTTTCCTTATTCTTGGAAACGCCAGGCTCTTTCAA
AATCCGTGGTGTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCGAC
AAAAAAAGAGAACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAGCT
TTTGCGTTCGTTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATGCC
CAACGAAGCACCAAAGGACCGTCAAACTACAATCGAGTATAAATCGACTG
AAATTGTTACCGTAATCAAATCTTTTGGAAGGGATAACAGAATTCCAAAC
CTTTCCTACAATGATATGACGATTGGTATTTATTTTAATAGAAGAAATTA
CAAAACATATATCGCGATGAGTTTTCGACATGGTATGAGTGTGGACGACA
TCACATTGTCGCATATCGAAAAAGCGCACCAAAACATGAAAGACTTATCC
AGCACACTCTTCATAGAGACACCATTGGTCCATGGGATGGAGAATCGTTT
ACGTGGAGAAATTCCCAACGTTGATTCGTTGTCGTTGAAATTGGAATGTT
TACAAAGCACCGGGCAATGAAGACATTGTTTAGTCTTGGTTTGGTGGTTG
AGCCGTCAGGTGCGGCTGCGTTCGCTGCGCTGCAATCGAATAAAGTACCG
GAAGCCGAAGGGAAGAAAGTGACGGTGATTGTGACCGGTGGAAATGTCAC
TCTTAAAGATCTCACTCAACACATTGGACTGTGAGTGAGATGACTTACAA
GATGATCAAGAAATACACTGAAGGGATTCTCCTTGTCTCTGAAGATGAAC
TCAAAAGTGCCGAAAATGTACGAAGCGTTGAAAGCTGATGGCCCAGTGCC
ATTCAATCGAAAGCCAACCATCGCGACGGGTCTCGCCCCTCCTACCGCTG
TGCAGGTATGGAATTGATGGCCCAGACTTCGCGACAACAGCAACCAGATA
TCGTATTGGTGTGCTGTGGAGGTGGTGGTCTTTGTGCTGGTGTGGCTGCC
GCTCTCAAACTATCTGATGGTTGGAAAGATACAAGAATTTATGGTGTCGA
AGCAGAGAATGTCATACGGCTGTACAGTGAATCTTTCACCAGTCCAACAA
CTCGTGGAAAATGTAAACAATGAAATCGAACGAACCGGTGGAATGTATTT
TCATTCTTATGATGATCCTTTCCTTATTCTTGGAAACGCCAGGCTCTTTC
AAAATCCGTGGTGTGGTCAATCAATTTCTCAACTTACGTGACGAAGATCG
ACAAAAAAAGAGAACCTTGGTCACCATGTCTGCTGGCAATTATGGGAAAG
CTTTTGCGTTCGTTTCGAATCAAGAACACATGCCAGGTGTTGTGTATATG
CCCAACGAAGCACCAAAGGACCGTCAAACTACAATCGAGTATAAATCGAC
TGAAATTGTTACCGTAATCAAATCTTTTGGAAGGGATAACAGAATTCCAA
ACCTTTCCTACAATGATATGACGATTGGTATTTATTTTAATAGAAGAAAT
TACAAAACATATATCGCGATGAGTTTTCGACATGGTATGAGTGTGGACGA
CATCACATTGTCGCATATCGAAAAAGCGCACCAAAACATGAAAGACTTAT
CCAGCACACTCTTCATAGAGACACCATTGGTCCATGGGATGGAGAATCGT
TTACGTGGAGAAATTCCCAACGTTGATTCGTTGTCGTTGAAATTGGAATG
TTTACAAAGCACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033854XLOC_033854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053677-exon-scaffold_233-1575043694:693085..693409TCONS_00053677-exon-scaffold_233-1575043694:693085..693409Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1575043694:692530..692726TCONS_00053677-exon-scaffold_233-1575043694:692530..692726Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1575043694:692138..692268TCONS_00053677-exon-scaffold_233-1575043694:692138..692268Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1575043694:691471..691631TCONS_00053677-exon-scaffold_233-1575043694:691471..691631Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1575043694:691199..691291TCONS_00053677-exon-scaffold_233-1575043694:691199..691291Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1575043694:690884..690956TCONS_00053677-exon-scaffold_233-1575043694:690884..690956Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1575043694:689437..689853TCONS_00053677-exon-scaffold_233-1575043694:689437..689853Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1510915933:693085..693409TCONS_00053677-exon-scaffold_233-1510915933:693085..693409Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1510915933:692530..692726TCONS_00053677-exon-scaffold_233-1510915933:692530..692726Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1510915933:692138..692268TCONS_00053677-exon-scaffold_233-1510915933:692138..692268Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1510915933:691471..691631TCONS_00053677-exon-scaffold_233-1510915933:691471..691631Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1510915933:691199..691291TCONS_00053677-exon-scaffold_233-1510915933:691199..691291Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1510915933:690884..690956TCONS_00053677-exon-scaffold_233-1510915933:690884..690956Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1510915933:689437..689853TCONS_00053677-exon-scaffold_233-1510915933:689437..689853Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1491911889:693085..693409TCONS_00053677-exon-scaffold_233-1491911889:693085..693409Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1491911889:692530..692726TCONS_00053677-exon-scaffold_233-1491911889:692530..692726Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1491911889:692138..692268TCONS_00053677-exon-scaffold_233-1491911889:692138..692268Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1491911889:691471..691631TCONS_00053677-exon-scaffold_233-1491911889:691471..691631Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1491911889:691199..691291TCONS_00053677-exon-scaffold_233-1491911889:691199..691291Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1491911889:690884..690956TCONS_00053677-exon-scaffold_233-1491911889:690884..690956Clytia hemisphaericaexon
TCONS_00053677-exon-scaffold_233-1491911889:689437..689853TCONS_00053677-exon-scaffold_233-1491911889:689437..689853Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053677-proteinTCONS_00053677-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:689437..693409 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.668	28.1314	20.5582	17.2681	13.2899	11.3293	12.9772	13.5869	16.6594	11.6581	18.1836	18.2779	27.7461	28.3609	42.3766	42.9471	27.597	23.8053	15.2378	15.2809	12.2136	11.1964	15.1344	13.1368	8.62496	8.47018	7.61645	8.04108	9.44663	9.82724
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001926TrpB-like_PLP-dep
IPR000634Ser/Thr_deHydtase_PyrdxlP-BS
Vocabulary: Biological Process
TermDefinition
GO:0006520cellular amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0030170 pyridoxal phosphate binding
Blast
[Close]
BLAST of TCONS_00053677 vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.920e-31
Identity = 98/335 (29.25%), Postives = 167/335 (49.85%), Query Frame = 1 
Query:  163 ITLSHIEKAHQNMKDLSSTLFIETPLVHGMENRLRGEIPNVDSLSLKLECLQSTGSFKIRGVVNQFLNL-RDEDRQKKRTLVTMSAGNYGKAFAFVSNQEHMPGVVYMPNEAPKDRQTTIESYGCT-VNLSPVQQLVENVNNEI-ERTGGMYFHSYDDPFLILGNASAGMELMAQTSRQQQPDIXXXXXXXXXXXXXXXXXXKLSDGWKDTRIYGVEAENVPKMYEALKADGPVPFNRKP--TIATGLAPPTAGEMTYKMIKKYTEGILLVSEDELKRAMKTLFS-LGLVVEPSGAAAFAALQSN--KVPEAEGKKVTVIVTGGNVTLKDLTQHI 1143
            I+ + +EKAH N++D   ++ +   L   + N+L G      +L  K E  Q TGSFKIRG +N   +L  D   +K + +VT S+GN+G+A  + +  E +P  + +P  AP  ++  I++YG + V   P  +  ENV   + E T G+  H   +P +I G  +  +E++ Q      P +  +    GG       A+ +       ++Y  E  N    Y++ K  G +  N  P  TIA G+   + G  T+ +I+   + I  V+EDE+K A + ++  + L++EP+     AA+ S   +    E K + ++++GGNV   DLT  I
Sbjct:    7 ISFADVEKAHINIRD---SIHLTPVLTSSILNQLTGR-----NLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQV-----PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQS-KLKGKLMPNLYPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNV---DLTSSI 323
The following BLAST results are available for this feature:
BLAST of TCONS_00053677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRR5.920e-3129.25Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1[more]
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