TCONS_00053370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053370
Unique NameTCONS_00053370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053370 ID=TCONS_00053370|Name=TCONS_00053370|organism=Clytia hemisphaerica|type=transcript|length=1750bp
AACAGAATTTACCTTAATGTACCTATTAAGGACGATGCTACCAACATCTA
CAAGAGAGAATAAAATAACTAAAATCTAATATGAGAATATAACATGGAAA
CATAATCAATAACGATCAACTGGTAGGTTCCATTGGATCAATATTAATAA
ACATTGGTTTGGGTTGTAAGGACATAGAACCAGGAAACATACCAGCAACT
TCTACGTTTTTCTTTTCACGTTGTCGCCGATTACAAAACCAAACCCTAAC
AACTTCTTTCTCAGTTTTTAAATGATTTGCTATTTGACTCAATTGTGATC
CATTCGGCTTTTGATTTGTCATAAAAAGAGCTTCTAAATTTCCTTTGAGT
CCAAAATCTAAGGAAGTCCGTTTCCTACGTTTCTTAGCTCGAATGTTTGT
CTTCTTTTGCTTTCCGCTAGTGCTGGATTCATCACCTTTTAACTTACTTT
CTACTTCATCCAGCcattttgaaaacaaaggaTACAAGTTACACATACTG
TTATGGCTTAATTGCATTGCTTCAAACCGACAAACATGAGTTTGACTAAA
CAAATTTCCAAGCATATTCCCCAAACTAAGGCCTACATCAGCCTGGGTGA
AGCCAAGACTGACTCTTCTTTGCTTAAACCTTTTAGTGAATTCTATGATT
TCCTCTTCACTGATTGGCTCTTCTTTTTCAACAGTCGATTCATGTGTTTC
TTCAGTTAGAATACGATCCTCTTTGGTACTCAGTTTCAAATCAATATCAG
TATCATCATAGTCATCAATAATGTTGTCATCCTTTTTTACTATAGGTTCT
GCTTTGGGAAGACCTTCTTTCATATTCACCATTTCAACACTTTTGCTGCT
TCTTGTTGAAGTAGAAGAGTTTTCATCATCACTCCATGCTTTTTTGAAAT
ACGGTGGAGTGACATCTACTAACTCAGGTACtaatgattttaaattttca
gttgTTAAAATCTCTTTCTGAAACTTGTCATTTTCAATATCCCTATcctt
taatttttctaatttctttgtgtagtttttcaaatttttcgctgTTTCTT
TAGGGTCTGGAAGTAATAATGAATCTTCTGGATTCTGACACACGATAGAG
GTAGTCGGTACTAACCCAGAATTTAGAGGGTTATAGATAGTTTGGGTGAG
GTCAATAGGTTGACCGATCACTTGGTTAGCTATTAAGGGCATATGAACAG
GTTGTTGTTGAATAAATGTTGCAATAGGCTGTCGCAGTTGAAACCTGTCT
CCTTGTATTGTCACCAAAGTATTATTTGTCATAAATTGTGCAGGTGGCGG
TATAGTGTTATGTATAACAACGTTTGGTGGTATTTGATGTTGGGAACCCA
TAATTGTTGGTTGTTTTATGTCATCATTTGTCAACAGTATCGTTTGCATT
GCTGGATAGGATTGTTCACCGATAACCGCTTGGTCTTCtttcaaagaaat
caaattaCTTTTGACATCAAGGTCAATATCCAATTCATTCATATTGCTCA
ATTCCATGTctagaaatgaaaaagaagaattttagCTCGTACATCCTGAA
AATCAATTGAAAATTGACCATGAAAGTGAAGCCTGTAGCTGTTCAATCAT
CATATTGAAAACTGCATTTTGGTGAAAAACATGCCATGCCATGCAATGAA
AAAATAGAGATTTTAGCATTTTTGCTGTTCATTTTGCAGACGATCCGAAA
ATAAAATGTTGGAATTTTGGTGTTTGCATCCTGTTTACccaatgttttta
Run BLAST on NCBI

protein sequence of TCONS_00053370-protein

>TCONS_00053370-protein ID=TCONS_00053370-protein|Name=TCONS_00053370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MELSNMNELDIDLDVKSNLISLKEDQAVIGEQSYPAMQTILLTNDDIKQP
TIMGSQHQIPPNVVIHNTIPPPAQFMTNNTLVTIQGDRFQLRQPIATFIQ
QQPVHMPLIANQVIGQPIDLTQTIYNPLNSGLVPTTSIVCQNPEDSLLLP
DPKETAKNLKNYTKKLEKLKDRDIENDKFQKEILTTENLKSLVPELVDVT
PPYFKKAWSDDENSSTSTRSSKSVEMVNMKEGLPKAEPIVKKDDNIIDDY
DDTDIDLKLSTKEDRILTEETHESTVEKEEPISEEEIIEFTKRFKQRRVS
LGFTQADVGLSLGNMLGNLFSQTHVCRFEAMQLSHNSMCNLYPLFSKWLD
EVESKLKGDESSTSGKQKKTNIRAKKRRKRTSLDFGLKGNLEALFMTNQK
PNGSQLSQIANHLKTEKEVVRVWFCNRRQREKKNVEVAGMFPGSMSLQPK
PMFINIDPMEPTS
Run BLAST on NCBI

transcript from alignment at scaffold_228:402271..404020

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053370 ID=TCONS_00053370|Name=TCONS_00053370|organism=Clytia hemisphaerica|type=transcript|length=1750bp|location=Sequence derived from alignment at scaffold_228:402271..404020 (Clytia hemisphaerica)
taaaaacattggGTAAACAGGATGCAAACACCAAAATTCCAACATTTTAT
TTTCGGATCGTCTGCAAAATGAACAGCAAAAATGCTAAAATCTCTATTTT
TTCATTGCATGGCATGGCATGTTTTTCACCAAAATGCAGTTTTCAATATG
ATGATTGAACAGCTACAGGCTTCACTTTCATGGTCAATTTTCAATTGATT
TTCAGGATGTACGAGctaaaattcttctttttcatttctagACATGGAAT
TGAGCAATATGAATGAATTGGATATTGACCTTGATGTCAAAAGtaatttg
atttctttgaaaGAAGACCAAGCGGTTATCGGTGAACAATCCTATCCAGC
AATGCAAACGATACTGTTGACAAATGATGACATAAAACAACCAACAATTA
TGGGTTCCCAACATCAAATACCACCAAACGTTGTTATACATAACACTATA
CCGCCACCTGCACAATTTATGACAAATAATACTTTGGTGACAATACAAGG
AGACAGGTTTCAACTGCGACAGCCTATTGCAACATTTATTCAACAACAAC
CTGTTCATATGCCCTTAATAGCTAACCAAGTGATCGGTCAACCTATTGAC
CTCACCCAAACTATCTATAACCCTCTAAATTCTGGGTTAGTACCGACTAC
CTCTATCGTGTGTCAGAATCCAGAAGATTCATTATTACTTCCAGACCCTA
AAGAAAcagcgaaaaatttgaaaaactacacaaagaaattagaaaaatta
aaggATAGGGATATTGAAAATGACAAGTTTCAGAAAGAGATTTTAAcaac
tgaaaatttaaaatcattaGTACCTGAGTTAGTAGATGTCACTCCACCGT
ATTTCAAAAAAGCATGGAGTGATGATGAAAACTCTTCTACTTCAACAAGA
AGCAGCAAAAGTGTTGAAATGGTGAATATGAAAGAAGGTCTTCCCAAAGC
AGAACCTATAGTAAAAAAGGATGACAACATTATTGATGACTATGATGATA
CTGATATTGATTTGAAACTGAGTACCAAAGAGGATCGTATTCTAACTGAA
GAAACACATGAATCGACTGTTGAAAAAGAAGAGCCAATCAGTGAAGAGGA
AATCATAGAATTCACTAAAAGGTTTAAGCAAAGAAGAGTCAGTCTTGGCT
TCACCCAGGCTGATGTAGGCCTTAGTTTGGGGAATATGCTTGGAAATTTG
TTTAGTCAAACTCATGTTTGTCGGTTTGAAGCAATGCAATTAAGCCATAA
CAGTATGTGTAACTTGTAtcctttgttttcaaaatgGCTGGATGAAGTAG
AAAGTAAGTTAAAAGGTGATGAATCCAGCACTAGCGGAAAGCAAAAGAAG
ACAAACATTCGAGCTAAGAAACGTAGGAAACGGACTTCCTTAGATTTTGG
ACTCAAAGGAAATTTAGAAGCTCTTTTTATGACAAATCAAAAGCCGAATG
GATCACAATTGAGTCAAATAGCAAATCATTTAAAAACTGAGAAAGAAGTT
GTTAGGGTTTGGTTTTGTAATCGGCGACAACGTGAAAAGAAAAACGTAGA
AGTTGCTGGTATGTTTCCTGGTTCTATGTCCTTACAACCCAAACCAATGT
TTATTAATATTGATCCAATGGAACCTACCAGTTGATCGTTATTGATTATG
TTTCCATGTTATATTCTCATATTAGATTTTAGTTATTTTATTCTCTCTTG
TAGATGTTGGTAGCATCGTCCTTAATAGGTACATTAAGGTAAATTCTGTT

Coding sequence (CDS) from alignment at scaffold_228:402271..404020

>TCONS_00053370 ID=TCONS_00053370|Name=TCONS_00053370|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at scaffold_228:402271..404020 (Clytia hemisphaerica)
ATGGAATTGAGCAATATGAATGAATTGGATATTGACCTTGATGTCAAAAG
taatttgatttctttgaaaGAAGACCAAGCGGTTATCGGTGAACAATCCT
ATCCAGCAATGCAAACGATACTGTTGACAAATGATGACATAAAACAACCA
ACAATTATGGGTTCCCAACATCAAATACCACCAAACGTTGTTATACATAA
CACTATACCGCCACCTGCACAATTTATGACAAATAATACTTTGGTGACAA
TACAAGGAGACAGGTTTCAACTGCGACAGCCTATTGCAACATTTATTCAA
CAACAACCTGTTCATATGCCCTTAATAGCTAACCAAGTGATCGGTCAACC
TATTGACCTCACCCAAACTATCTATAACCCTCTAAATTCTGGGTTAGTAC
CGACTACCTCTATCGTGTGTCAGAATCCAGAAGATTCATTATTACTTCCA
GACCCTAAAGAAAcagcgaaaaatttgaaaaactacacaaagaaattaga
aaaattaaaggATAGGGATATTGAAAATGACAAGTTTCAGAAAGAGATTT
TAAcaactgaaaatttaaaatcattaGTACCTGAGTTAGTAGATGTCACT
CCACCGTATTTCAAAAAAGCATGGAGTGATGATGAAAACTCTTCTACTTC
AACAAGAAGCAGCAAAAGTGTTGAAATGGTGAATATGAAAGAAGGTCTTC
CCAAAGCAGAACCTATAGTAAAAAAGGATGACAACATTATTGATGACTAT
GATGATACTGATATTGATTTGAAACTGAGTACCAAAGAGGATCGTATTCT
AACTGAAGAAACACATGAATCGACTGTTGAAAAAGAAGAGCCAATCAGTG
AAGAGGAAATCATAGAATTCACTAAAAGGTTTAAGCAAAGAAGAGTCAGT
CTTGGCTTCACCCAGGCTGATGTAGGCCTTAGTTTGGGGAATATGCTTGG
AAATTTGTTTAGTCAAACTCATGTTTGTCGGTTTGAAGCAATGCAATTAA
GCCATAACAGTATGTGTAACTTGTAtcctttgttttcaaaatgGCTGGAT
GAAGTAGAAAGTAAGTTAAAAGGTGATGAATCCAGCACTAGCGGAAAGCA
AAAGAAGACAAACATTCGAGCTAAGAAACGTAGGAAACGGACTTCCTTAG
ATTTTGGACTCAAAGGAAATTTAGAAGCTCTTTTTATGACAAATCAAAAG
CCGAATGGATCACAATTGAGTCAAATAGCAAATCATTTAAAAACTGAGAA
AGAAGTTGTTAGGGTTTGGTTTTGTAATCGGCGACAACGTGAAAAGAAAA
ACGTAGAAGTTGCTGGTATGTTTCCTGGTTCTATGTCCTTACAACCCAAA
CCAATGTTTATTAATATTGATCCAATGGAACCTACCAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033684XLOC_033684Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053370-proteinTCONS_00053370-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053370-exon-scaffold_228-1491911889:402271..404020TCONS_00053370-exon-scaffold_228-1491911889:402271..404020Clytia hemisphaericaexon
TCONS_00053370-exon-scaffold_228-1510915933:402271..404020TCONS_00053370-exon-scaffold_228-1510915933:402271..404020Clytia hemisphaericaexon
TCONS_00053370-exon-scaffold_228-1575043694:402271..404020TCONS_00053370-exon-scaffold_228-1575043694:402271..404020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:402271..404020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86483	1.70625	0.782019	0.688575	12.512	9.49462	10.8333	12.4419	5.49039	6.72864	6.9275	3.5419	4.73128	3.76859	5.07231	5.72395	5.13303	6.02291	2.91234	2.17683	3.00503	3.38751	3.7748	4.89577	8.42894	11.7803	2.33607	1.58346	2.98973	2.44726
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013847POU
IPR001356Homeobox_dom
IPR000327POU_dom
IPR009057Homeobox-like
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00053370 vs. Swiss-Prot (Human)
Match: PO3F2 (POU domain, class 3, transcription factor 2 OS=Homo sapiens GN=POU3F2 PE=1 SV=4)

HSP 1 Score: 170.244 bits (430), Expect = 2.932e-46
Identity = 79/155 (50.97%), Postives = 109/155 (70.32%), Query Frame = -1 
Query:  176 FTKRFKQRRVSLGFTQADVGLSLGNMLGNLFSQTHVCRFEAMQLSHNSMCNLYPLFSKWLDEVESKLKGDESSTSGKQKKTNIRAKKRRKRTSLDFGLKGNLEALFMTNQKPNGSQLSQIANHLKTEKEVVRVWFCNRRQREKKNVEVAGMFPGS 640
            F K+FKQRR+ LGFTQADVGL+LG + GN+FSQT +CRFEA+QLS  +MC L PL +KWL+E +S      S +     K   + +KR+KRTS++  +KG LE+ F+   KP+  +++ +A+ L+ EKEVVRVWFCNRRQ+EK+     G  PG+
Sbjct:  273 FAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS-----SGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGA 422
The following BLAST results are available for this feature:
BLAST of TCONS_00053370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PO3F22.932e-4650.97POU domain, class 3, transcription factor 2 OS=Hom... [more]
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