TCONS_00053370-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053370-protein
Unique NameTCONS_00053370-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053370-protein ID=TCONS_00053370-protein|Name=TCONS_00053370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MELSNMNELDIDLDVKSNLISLKEDQAVIGEQSYPAMQTILLTNDDIKQP
TIMGSQHQIPPNVVIHNTIPPPAQFMTNNTLVTIQGDRFQLRQPIATFIQ
QQPVHMPLIANQVIGQPIDLTQTIYNPLNSGLVPTTSIVCQNPEDSLLLP
DPKETAKNLKNYTKKLEKLKDRDIENDKFQKEILTTENLKSLVPELVDVT
PPYFKKAWSDDENSSTSTRSSKSVEMVNMKEGLPKAEPIVKKDDNIIDDY
DDTDIDLKLSTKEDRILTEETHESTVEKEEPISEEEIIEFTKRFKQRRVS
LGFTQADVGLSLGNMLGNLFSQTHVCRFEAMQLSHNSMCNLYPLFSKWLD
EVESKLKGDESSTSGKQKKTNIRAKKRRKRTSLDFGLKGNLEALFMTNQK
PNGSQLSQIANHLKTEKEVVRVWFCNRRQREKKNVEVAGMFPGSMSLQPK
PMFINIDPMEPTS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033684XLOC_033684Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053370TCONS_00053370Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013847POU
IPR001356Homeobox_dom
IPR000327POU_dom
IPR009057Homeobox-like
IPR010982Lambda_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013847POU domainPRINTSPR00028POUDOMAINcoord: 375..395
score: 46.13
coord: 298..315
score: 60.82
coord: 410..425
score: 70.31
coord: 321..334
score: 68.75
coord: 337..352
score: 48.18
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 376..438
e-value: 9.4E-12
score: 55.0
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 377..433
e-value: 2.4E-14
score: 52.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 374..434
score: 15.354
IPR000327POU-specific domainSMARTSM00352poucoord: 279..353
e-value: 2.7E-35
score: 133.2
IPR000327POU-specific domainPFAMPF00157Poucoord: 284..353
e-value: 2.0E-28
score: 98.1
IPR000327POU-specific domainPROSITEPS51179POU_3coord: 279..353
score: 42.502
NoneNo IPR availableGENE3D1.10.10.60coord: 373..437
e-value: 4.5E-14
score: 51.5
NoneNo IPR availableGENE3D1.10.260.40coord: 282..362
e-value: 4.6E-29
score: 99.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..379
NoneNo IPR availableCDDcd00086homeodomaincoord: 377..434
e-value: 3.67262E-9
score: 51.8605
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 375..441
IPR010982Lambda repressor-like, DNA-binding domainSUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 285..353

Blast
[Close]
BLAST of TCONS_00053370-protein vs. Swiss-Prot (Human)
Match: PO3F2 (POU domain, class 3, transcription factor 2 OS=Homo sapiens GN=POU3F2 PE=1 SV=4)

HSP 1 Score: 175.252 bits (443), Expect = 1.104e-49
Identity = 82/173 (47.40%), Postives = 120/173 (69.36%), Query Frame = 0 
Query:  272 HESTVEKEEPISEEEIIEFTKRFKQRRVSLGFTQADVGLSLGNMLGNLFSQTHVCRFEAMQLSHNSMCNLYPLFSKWLDEVESKLKGDESSTSGKQKKTNIRAKKRRKRTSLDFGLKGNLEALFMTNQKPNGSQLSQIANHLKTEKEVVRVWFCNRRQREKKNVEVAGMFPGS 444
            H+   +++ P S++ + +F K+FKQRR+ LGFTQADVGL+LG + GN+FSQT +CRFEA+QLS  +MC L PL +KWL+E +S      S +     K   + +KR+KRTS++  +KG LE+ F+   KP+  +++ +A+ L+ EKEVVRVWFCNRRQ+EK+     G  PG+
Sbjct:  256 HDPHSDEDTPTSDD-LEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADS-----SSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLPGA 422
The following BLAST results are available for this feature:
BLAST of TCONS_00053370-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PO3F21.104e-4947.40POU domain, class 3, transcription factor 2 OS=Hom... [more]
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