TCONS_00053201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053201
Unique NameTCONS_00053201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053201 ID=TCONS_00053201|Name=TCONS_00053201|organism=Clytia hemisphaerica|type=transcript|length=3769bp
CTGAACGTTATTTATATATTCACAACAGCTACTTTTGAGATTACCAAttt
caactatcctagttttcaTTTTGAATGAGTAGGTTGCATTTTCTTGAAGG
GAAAGTAGTTAAAACATGATTTTTTTGGAGGTATGTTATTTCTCATTTCT
GTGTTCTGCAATGTTGACAGAACACTTTTCTTGGNTAGTCAAAACATGAT
TTTTTTGGAGGTATGTTATTTCTCATTTCTGTGTTCTGCAATGTTGACAG
AACACTTTTCTTGGTAGattcaaaatggctgccgaTTCATATTTCACAAC
ATCAACACTGAGCAAGTAGGTGATGTGTACCTCGCTGGGTAAGAAAATCT
CTCTCTAATCATGGCTGTTTTCATTAAATCCAcaccttttatttttttag
tcaaaatattacaaaataatGGAAAAACCATTTAAATGGGCTGGAATCAT
CAATATCGGGGAATCAGTGAATGATTTGAGATGGAAATCAACGCATGGTA
CAATGAAATACCGCAACAAATTCATTTCCAAAAGAACTTTTGGCAATTAT
GAGATATTTTTTGAAGTACATCAATCTACTCTCAACTCACCTCTATTTGT
AATCAAGCTTTTCAAAACTGTTTTAGTAGACGATGAAGTAGAAAGTGTTC
AAGAGAAGACGTTTAATTGTAAGGCTTCGACAACGGCAGTCAAGAAAATG
TTGGGTTATTTAAAAGTGGAAATCAAGGGTAAGATTGTCGGCAACTCTTA
TTATGGTTTTTACAAAGATGAATATGTTGATGGAGTTAAAGCAGCTGAAA
TAATTTCTAAACAAGCCTCAGAAGCAGTAGAGAATAATGTTGACAGCGGT
GATGCTGATAATGTGAGCTCATCATCTACAGGTGATTCAATTTTTGCCAC
TTCATCAGGTATGTCAAGAACTTCAAATTGGCTGGATGTGGTTGAGTGGG
GAATTAGAAAAGACCACCCTGCGTTTATTAAAAATACAGGCCGTAAGCAA
GATAGCAAGAAAATTTATCTCCAGCCAGGTTATCATGCATTACGCACTAT
CAAGCTTGTTAGCGGAGAGATGATGACCGTGAATCTGAAAATCAAGGAAG
AAGATAATAAACCAAAATATGTCATATCTTCTGAGCATGATGAAATATGT
GAAGAATCATTCATAATTGGTACATGCCTTTCCAACTTTTTAGATAAGGC
TAAAGCAGTTCGCACGAAAAAAAACTGGTctggttttgaatttttcggtA
TGCAAAGAACTGACGTACAACGTAAGCTGGTTGCCGAGCTTGATGAGCAT
CTTGAAGGTTATTGTCCAGGTGAGATAAGTGAGGATGATGGTGGTGATGA
TACAAACCATGCTCAATTAATCAAGTCCCAACCACttatgaaaaacattt
tgaatatcAGGAAAAGAAACGCTGGACCGACCAGCAGTTTATGTCCTAAA
GCAATCAAAGCCCGCAATGAGGTCATTCATAATGTTGTGAAGTATGTGTC
GTTTGGCGATGAAAAGtCATTTGTTCAACATCTCATCACTGAGTGTCCAG
ATGTAATCGAATCAGCTTTGGAACTTAATGAAGATTACCTTTGTCGAATT
ATTTCAAAACTTAATTTGAAGACTAAACCAAAAACTTTGAACGAGAAGGA
TACAGCTGAGATGCTCATTGGGAAAGCTGATATTTCTCAACGAGGCTATG
GGAATATTCGTACCATCCTTGCTGCAAAATCTGTTAATATTCCTTCTtac
aaaaatgtgaaaacatATGTGAATGAGTTGAATGTTGGAAATATTGCCCC
AATACATGAAAGTGAAAGCAATTGTAAATGTATGGGGTACTTTTGTACAG
TTACTGAGACACTTCAAATGATTGCTTCATGTAatgatcttttttcaaaa
atgaagtttttctctattgaaagacaaaataaaatcagaaaatttttgat
ttcaaaagatGAAGACCTGTACCACAATTTTGATAGTCACAAAAAAACCA
TATTTTTGAGAGACACTGGAGACAACTTCCGAGCAGCGTCAAAATACCCG
ACTGAACAGACATCATTCAGTGTACTAAACATTGAAGAGCTAATCACATG
TCCATATGGACAGTTTATTTCTACCTTATGGAGAGGAAAGGAGTCACGGG
AAACTTTGCGTACACATGTCTCAAGAATTTACAACGAGCTTACAGATTTG
GTGAAATATGGTGTAGATTTAACTGTTGGTGatgaaaaagaacattttaa
tattGTAGTAATAAGTGTTACTGATTTAagttttacaaaagaaatgttgG
GAAAGTGCCAGTGTACTCACACATTTGGATGTATTCATTGTGAGTTAAAT
AGTAAAGAATGGTGTTCTCTGCAACCAAAAGTTGGTCAGTCGCAATCGTA
CAAGAAAATGATAGCACGAGGAGAAGAAGCCCTTGAGAAGTTGGGCAATT
GCCCAGACAAAGGTAGTCAAATCTACAAAAAGTTTACATCAGATCATTTT
GCTCAATGGgcaCCAGTCTTATTCAAAGGAACTATTGTCGAATTAACTCC
ACCTTGTGCTCTACATATGATATTGGCCCACCATCGCTATCTCTGGAAAT
TTCTACATCAAACGGTCACCAAAAGAAATCAAACGCACCTTATCCCAGTA
GCTTTGAGAAAAATCGGTTGCACTTATCTTGCTTTCCAAATTGAATCCTA
CCATAATAGCAAAAATAAATCGTACGATGGATCTGACACACTTAAGATGA
TTGGCAACGATTGCAAATTAATGGAACAAAATATCGATACGTTCTTGAAT
GTCTTTGTAGAAGAGCTCAATCAATCCTGGAATTCTAACAAGACGAATTC
ATTGAGAAgGATCTCAGAGCTACCCATGCTGACGAAACAAGAATAGAATC
GTTTCAAAGAAGAGTAGAAGCCTTTGTTCAGCTTTTTCTAATCCAGTCTC
CAAAGAAAGTCGTGGATAAGATGCCATATCTCCATTACCTGAGGAATCAT
GTTAGTGACCTAATGAAACTCTTCATGCACCTATTCGATTGGGGTTATGG
CTACTTTTCAACAAATGCTGGTGAGCATTTAAATAAACGTATCAAACAAA
CTGAGCTCTCTCACACTAACATGGACACACAACGATTCCGCAcaatcata
catattttacgtACCAAACAATTTAAGTTTACTGCTTCCATCATGTCTTC
AAAGAAGAAAACCAGCATCACTTGCTCAGCTTGTAACCAAACGGGACATA
ACAAGAGGAACAAGTCATGTCCAATGCATGAATCCCATCCACCTATTATC
TTTGATGATACAGATGAAGAATCTGGAAGTGAAGATTAACATTTTACCAT
TTTCGAAATTGTATTCTAGAGTTTTTTTCGAATTGTAGCCTAGTTcctta
ttttattgttttaaaaagttgaGACATCATTGTATTTTATGCCCtttgtt
tcgaaaaaaaaaaggtaCAGGTGAGAGCCGTGGATCGAATCCATACTTGG
CTGGGTGTACCAACTTTATCAAAAGTACAGCCAAATTCTAATGCAAATCA
TATCGAAACAGAGTTTTAGGATTATTTTACTTATTAGATTTGTATTTTTT
GCCCTTTGtttcgaaaaaataaacaagcgATACCTGGTTATCTGGAgaac
aaaatataattttgctcattttcttacaaaaaacacATCTCGCAACGGAA
ATTCACGTCTAAATACAAATACACTCTTTCAAATTACTCACCCCCGTATC
ACAGACCGGTGGgacccca
Run BLAST on NCBI

transcript from alignment at scaffold_227:59484..64683+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053201 ID=TCONS_00053201|Name=TCONS_00053201|organism=Clytia hemisphaerica|type=transcript|length=5200bp|location=Sequence derived from alignment at scaffold_227:59484..64683+ (Clytia hemisphaerica)
CTGAACGTTATTTATATATTCACAACAGCTACTTTTGAGATTACCAAttt
caactatcctagttttcaTTTTGAATGAGTAGGTTGCATTTTCTTGAAGG
GAAAGTAGTTAAAACATGATTTTTTTGGAGGTATGTTATTTCTCATTTCT
GTGTTCTGCAATGTTGACAGAACACTTTTCTTGGNTAGTCAAAACATGAT
TTTTTTGGAGGTATGTTATTTCTCATTTCTGTGTTCTGCAATGTTGACAG
AACACTTTTCTTGGTAGattcaaaatggctgccgaTTCATATTTCACAAC
ATCAACACTGAGCAAGTAGGTGATGTGTACCTCGCTGGGTAAGAAAATCT
CTCTCTAATCATGGCTGTTTTCATTAAATCCAcaccttttatttttttag
tcaaaatattacaaaataatGGAAAAACCATTTAAATGGGCTGGAATCAT
CAATATCGGGGAATCAGTGAATGATTTGAGATGGAAATCAACGCATGGTA
CAATGAAATACCGCAACAAATTCATTTCCAAAAGAACTTTTGGCAATTAT
GAGATATTTTTTGAAGTACATCAATCTACTCTCAACTCACCTCTATTTGT
AATCAAGCTTTTCAAAACTGTTTTAGTAGACGATGAAGTAGAAAGTGTTC
AAGAGAAGACGTTTAATTGTAAGGCTTCGACAACGGCAGTCAAGAAAATG
TTGGGTTATTTAAAAGTGGAAATCAAGGGTAAGATTGTCGGCAACTCTTA
TTATGGTTTTTACAAAGATGAATATGTTGATGGAGTTAAAGCAGCTGAAA
TAATTTCTAAACAAGCCTCAGAAGCAGTAGAGAATAATGTTGACAGCGGT
GATGCTGATAATGTGAGCTCATCATCTACAGGTGATTCAATTTTTGCCAC
TTCATCAGGTATGTCAAGAACTTCAAATTGGCTGGATGTGGTTGAGTGGG
GAATTAGAAAAGACCACCCTGCGTTTATTAAAAATACAGGCCGTAAGCAA
GATAGCAAGAAAATTTATCTCCAGCCAGGTTATCATGCATTACGCACTAT
CAAGCTTGTTAGCGGAGAGATGATGACCGTGAATCTGAAAATCAAGGAAG
AAGATAATAAACCAAAATATGTCATATCTTCTGAGCATGATGAAATATGT
GAAGAATCATTCATAATTGGTACATGCCTTTCCAACTTTTTAGATAAGGC
TAAAGCAGTTCGCACGAAAAAAAACTGGTctggttttgaatttttcggtA
TGCAAAGAACTGACGTACAACGTAAGCTGGTTGCCGAGCTTGATGAGCAT
CTTGAAGGTTATTGTCCAGGTGAGATAAGTGAGGATGATGGTGGTGATGA
TACAAACCATGCTCAATTAATCAAGTCCCAACCACttatgaaaaacattt
tgaatatcAGGAAAAGAAACGCTGGACCGACCAGCAGTTTATGTCCTAAA
GCAATCAAAGCCCGCAATGAGGTCATTCATAATGTTGTGAAGTATGTGTC
GTTTGGCGATGAAAAGtgtaaatatatatatatatatttttttttaactc
tcCCAAAATAGGTACAAATTCTGAATCACGAGGTAGTTATTAGTTCAAGC
AACCCaatatttcaataattttctttaaGGTCAGAAAAGTAGAACACAAT
GGTGATGTTAAGGCTGATGTCCAATTTGCGTGAAGCGCGCGTAAAACCTT
TTTTAAGTTAACGTAATTAGTTGATTGAAAATAGAAACAATTCCACCGGT
CAAAATTGACATAAccgttgaaaaaattaaatttcctttaaccttttttt
gtttgcctgaagttattaatttattattaatttattttaagTAAATTAAT
TATTTGGCAattattttttaacctttcttttTCCCTTTTAGCATTTGTTC
AACATCTCATCACTGAGTGTCCAGATGTAATCGAATCAGCTTTGGAACTT
AATGAAGATTACCTTTGTCGAATTATTTCAAAACTTAATTTGAAGACTAA
ACCAAAAACTTTGAACGAGAAGGATACAGCTGAGATGCTCATTGGGAAAG
CTGATATTTCTCAACGAGGCTATGGGAATATTCGTACCATCCTTGCTGCA
AAATCTGTTAATATTCCTTCTtacaaaaatgtgaaaacatATGTGAATGA
GTTGAATGTTGGAAATATTGCCCCAATACATGAAAGTGAAAGCAATTGTA
AATGTATGGGGTACTTTTGTACAGTTACTGAGACACTTCAAATGATTGCT
TCATGTAatgatcttttttcaaaaatgaagtttttctctattgaaagaca
aaataaaatcagaaaatttttgatttcaaaagatGAAGACCTGTACCACA
ATTTTGATAGTCACAAAAAAACCATATTTTTGAGAGACACTGGAGACAAC
TTCCGAGCAGCGTCAAAATACCCGACTGAACAGACATCATTCAGTGTACT
AAACATTGAAGAGCTAATCACATGTCCATATGGACAGTTTATTTCTACCT
TATGGAGAGGAAAGGAGTCACGGGAAACTTTGCGTACACATGTCTCAAGA
ATTTACAACGAGCTTACAGATTTGGTGAAATATGGTGTAGATTTAACTGT
TGGTGatgaaaaagaacattttaatattGTAGTAATAAGTGTTACTGATT
TAagttttacaaaagaaatgttgGGAAAGTGCCAGTGTACTCACACATTT
GGATGTATTCATTGTGAGTTAAATAGTAAAGAATGGTGTTCTCTGCAACC
AAAAGTTGGTCAGTCGCAATCGTACAAGAAAATGATAGCACGAGGAGAAG
AAGCCCTTGAGAAGTTGGGCAATTGCCCAGACAAAGGTAGTCAAATCTAC
AAAAAGTTTACATCAGATCATTTTGCTCAATGGGTAGGTGCAATATAATT
TTGCTGTACAGAAAAGGTTTAATTTTCACGCTTACTAATTTTCAGGGAAC
TTATTTCCCTGCTAAGAGGGTCTAAAATATCTATATTTCGCAGAACTAAT
AATCACGCTTGACACCCACTTTTTGCTAAAGTTTtctcattttcctaggg
gtatttgaaattatttgacAAAACTGCATATTGCGGGACTAATGTTTTCG
ATAGACACCCAGAGACAcccaaaaacgcaaaaattaattcccacaaaaat
tagttccgcaaaaattaattaccACAAAAACTAGTTTCCTTAAGGTATAT
GGAttactcttctgtgcttaattgaCTTTTCTCGCAAAGGTGTCAAAAAC
CTTAATTTTCCCACCAAAATCACTCCAATATCCCTTAATTATGACCCCCa
ccccattttatgatttttctaccAGAGTGTCCACTTATCAGACCCCCCTC
ctcctacaattaagcacagaagagtacCGGATTATGGATaaccctttttt
ctttttttcaggcaCCAGTCTTATTCAAAGGAACTATTGTCGAATTAACT
CCACCTTGTGCTCTACATATGATATTGGCCCACCATCGCTATCTCTGGAA
ATTTCTACATCAAACGGTCACCAAAAGAAATCAAACGCACCTTATCCCAG
TAGCTTTGAGAAAAATCGGTTGCACTTATCTTGCTTTCCAAATTGAATCC
TACCATAATAGGTAGttattgttttaaagaaaataattttatcagctATT
TTTGTGATACCATTATTTACAATGCATTGCTGAACAAggatatttttgaa
tgaaaatttctgccagcacaggattttaaattttataactacacgttttt
tataagcatataacaCTTATAAGCATACCCAGGCTCAAATCTTGGAATAC
TTAGCATAACGAGGCTCACAAAAATTTACcctgtgcttataaaaaaggtg
tataATAATTAAAATTCGAGATTTTAGAGTTTAATTTTGTTTTCCCATAG
CAAAAATAAATCGTACGATGGATCTGACACACTTAAGATGATTGGCAACG
ATTGCAAATTAATGGAACAAAATATCGATACGTTCTTGAATGTCTTTGTA
GAAGAGCTCAATCAATCCTGGAATTCTAACAAGACGAATTCATTGAGAAG
TATATTGAAGTTGTATAATGCATTTAGTGATATTGCAAGGTatcttttct
caaatttttgctgATATAATTAATTCTGATTTTATGTTAAAGATGTTTAT
TCTAACCCAATCTTTGAGAATTTTGAAGAGCAAGTATCTTTCAGAAAATT
CAATAGAGACCCGTAGTATACAGTTATTAAAATTCTAATAAtgaatttag
aaaaaacaatCGCTAAACGtacaaattatttctttttaggGATCTCAGAG
CTACCCATGCTGACGAAACAAGAATAGAATCGTTTCAAAGAAGAGTAGAA
GCCTTTGTTCAGCTTTTTCTAATCCAGTCTCCAAAGAAAGTCGTGGATAA
GATGCCATATCTCCATTACCTGAGGAATCATGTTAGTGACCTAATGAAAC
TCTTCATGCACCTATTCGATTGGGGTTATGGCTACTTTTCAACAAATGCT
GGTGAGCATTTAAATAAACGTATCAAACAAACTGAGCTCTCTCACACTAA
CATGGACACACAACGATTCCGCAcaatcatacatattttacgtACCAAAC
AATTTAAGTTTACTGCTTCCATCATGTCTTCAAAGAAGAAAACCAGCATC
ACTTGCTCAGCTTGTAACCAAACGGGACATAACAAGAGGAACAAGTCATG
TCCAATGCATGAATCCCATCCACCTATTATCTTTGATGATACAGATGAAG
AATCTGGAAGTGAAGATTAACATTTTACCATTTTCGAAATTGTATTCTAG
AGTTTTTTTCGAATTGTAGCCTAGTTccttattttattgttttaaaaagt
tgaGACATCATTGTATTTTATGCCCtttgtttcgaaaaaaaaaaggtaCA
GGTGAGAGCCGTGGATCGAATCCATACTTGGCTGGGTGTACCAACTTTAT
CAAAAGTACAGCCAAATTCTAATGCAAATCATATCGAAACAGAGTTTTAG
GATTATTTTACTTATTAGATTTGTATTTTTTGCCCTTTGtttcgaaaaaa
taaacaagcgATACCTGGTTATCTGGAgaacaaaatataattttgctcat
tttcttacaaaaaacacATCTCGCAACGGAAATTCACGTCTAAATACAAA
TACACTCTTTCAAATTACTCACCCCCGTATCACAGACCGGTGGgacccca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033584XLOC_033584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053201-exon-scaffold_227-1491911889:59484..61000TCONS_00053201-exon-scaffold_227-1491911889:59484..61000Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1510915933:59484..61000TCONS_00053201-exon-scaffold_227-1510915933:59484..61000Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1575043694:59484..61000TCONS_00053201-exon-scaffold_227-1575043694:59484..61000Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1491911889:61375..62366TCONS_00053201-exon-scaffold_227-1491911889:61375..62366Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1510915933:61375..62366TCONS_00053201-exon-scaffold_227-1510915933:61375..62366Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1575043694:61375..62366TCONS_00053201-exon-scaffold_227-1575043694:61375..62366Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1491911889:62895..63094TCONS_00053201-exon-scaffold_227-1491911889:62895..63094Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1510915933:62895..63094TCONS_00053201-exon-scaffold_227-1510915933:62895..63094Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1575043694:62895..63094TCONS_00053201-exon-scaffold_227-1575043694:62895..63094Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1491911889:63384..63532TCONS_00053201-exon-scaffold_227-1491911889:63384..63532Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1510915933:63384..63532TCONS_00053201-exon-scaffold_227-1510915933:63384..63532Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1575043694:63384..63532TCONS_00053201-exon-scaffold_227-1575043694:63384..63532Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1491911889:63773..64683TCONS_00053201-exon-scaffold_227-1491911889:63773..64683Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1510915933:63773..64683TCONS_00053201-exon-scaffold_227-1510915933:63773..64683Clytia hemisphaericaexon
TCONS_00053201-exon-scaffold_227-1575043694:63773..64683TCONS_00053201-exon-scaffold_227-1575043694:63773..64683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:59484..64683 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.29806	8.26748e-09	0.255018	0	0.00356334	0	0	1.13779e-07	0	0	0	0	0	0	0	0	0	0.0289061	0.0563975	0	0.342813	0	4.90827e-08	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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