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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053099 ID=TCONS_00053099|Name=TCONS_00053099|organism=Clytia hemisphaerica|type=transcript|length=2580bp
TATGACTTACCGCATTTCGTTTCTCATCTAACTTTATACCCCCTGAAATA
TTTATATAGACCATACTAGGAACATTTAGCAATTTTATATACAAAATTAG
GGGGGGTTCTTCAGTCACTAATGCAGTATAAAAGAGCAAATGCCAAAAGT
AAAGCTTCATCAATCAATAAAGCAATCTATCGAAGGCTAACTGAAGATTG
AGCgaacgaaaaaataatgaaGATTACATCTAGCAACATGTAAGTCCTAT
TTTCATCTGGTTCTTTAGTTAGGCTAGAACAAAATTCTTGACTTTGACTA
GTGCACATTTTTATCTTAACAAGcaatacttttatggacctacctgttta
taaaacgaataatgaAAGTTTAATGAAGGCACATGTAGAAACAAAAactg
aataatttaaaattttgcatgTTGGtgccaaaaatcttttttcgaaaaat
tcataTCTAGCACACTGTAATTATacgtctttgtacaaaaaattaggaaa
aactaataaaaagatttttaacaaagtccaaaaaaccctatttttgggcA
TTCTTTGGGCCCAAACTggcccaaaaattattttttttttgaaaatcgaa
ctCCATCACATTTGGTAATCACTATTTTGCACCTTCGTACCAAAAATTAC
agaattcctatgattcaatcccgagaaaagttggtaacaaacgaacggac
gaacagaggttgatttataggacctccagGTTCTCAAGGGTCATCAATGT
CTCCAACAATGAAAGCACCAGAGACTCAAGAAATAAATGCTGACAATGGT
GAGATTGATGCAGAAAACGAGGAGGAGGGTGTTATGACTCAAGAACTCAA
AGATGAAATTGATCAAGACATTTTGGAAGGTGAAAACAACGGCAACGAAG
AAAATGACGATGAGGAAGACCTTGCAAAAAGTCGTGAAAAACGTTTTATT
CGGTTCCGTAGAATTAGAGTACCACTAGCAGGCTGCTATTTTATGGGATG
CGTGCATCCTAGAGTACCACGAATTCGTATTAGCCTTCGAAGGGTCCGGG
ATCAAGTCAAATGCCCCACAAGCTCCTGGTATTGCAAAATTGGCTTGcca
caaaatcaagaaaaattgtAGATGTGGATTTTTCGGATGAACTGTTCAAT
TtgacttataaaattattctatcttttttaaattagatGGGTTAGATTTA
TAGAATATATAAACTTTGATAGATTTacaattaaggtcataatatattga
gaattttggttattttaacgtttttcaagatttaaagttctggcgagaaa
gtcgatttttggctatctttttaattNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNcatcgaatatttcaatttgggaggggttggcagactt
ccaggctatattctgagtcttattggactatttttgaacttttggatcct
cagatcctaaggtcctaattcttaagtttcatgttaaaattcagagttaa
aactctacccttccaacctactttagagcacttccaaatcgattgtggtt
caaaaacttcccggtggatttctcttttttctcaaatattatgaccttga
ttgtagctgatgattgtcgtccatacgggcggcatgaaacttaaagctct
gaaacaataaatcaaagcctctttcttttaatttgaacaaGTTCTGATAT
CATCGAGCACTCTCGGCAGATAGAAGAAAATAGACTTGTAAACTTTGATA
GATAAATTTCAATACTTTGAAAGGCATAAGCCTTGTCCCCTTTCGCCATT
TTAACCTTAATGTTTTGTAGAGTAAGGTAGAGTAAATAAAGGGATTATGA
AACAATTTCATCCTTGTGTGCAAAActaaattcgaaaagttttaaatttc
tcGTTTAAAAGCTCTTGTGCTCATTCTTGAGTATTTACATAGAAGATTTT
TGAAAGGTAATCGGGCCCCCTCTCAAGTCTAAAAATCATATCTATTTACG
AACAAATCACATGTGCCACCCCCTTCTCAtggacccactgggaccccttc
ccactggaaaattggccaaaatatcgcccccagtggaaaattatactcca
atttatGTCCACgtcgaaaataatcaaataagcaaatcctcactgtaaaa
tatCGTGCtagtttttccatccccactgaattttatgggttgaaaacaat
ggaatttaaatccccagccataaaaaacaatATCAATCCCCGTCGATTGT
TTGCCTGTTATTTCCTGTTATTTCTACCCCCACCCTTGGCAGAAACAATC
CtaccggatctgtgagaagggtctgtgagaagggggtatcaTATGGTTAG
CCCCCACCTATACAGGTAGTGAAAATCAATCGATAATACTCTCCACTTAC
TTTCATAGAGCCATTGCATTGACATCCAATCGATCAACGATCACTTCAAA
TACAAAATCAACATCAATTAATGCTTCCTGAAGTGTTTTAGATGTCTCTA
CGTCACCCTACGAAAATAATGGCACATTAGTCCAGTTAATTAAAGAACCT
TCTATCTCTTAGGGTTCGGTTACAAAAGAT Run BLAST on NCBI protein sequence of TCONS_00053099-protein >TCONS_00053099-protein ID=TCONS_00053099-protein|Name=TCONS_00053099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MSPTMKAPETQEINADNGEIDAENEEEGVMTQELKDEIDQDILEGENNGN
EENDDEEDLAKSREKRFIRFRRIRVPLAGCYFMGCVHPRVPRIRISLRRV
RDQVKCPTSSWYCKIGLPQNQEKL Run BLAST on NCBI transcript from alignment at scaffold_226:117737..121296+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053099 ID=TCONS_00053099|Name=TCONS_00053099|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at scaffold_226:117737..121296+ (Clytia hemisphaerica)
TATGACTTACCGCATTTCGTTTCTCATCTAACTTTATACCCCCTGAAATA
TTTATATAGACCATACTAGGAACATTTAGCAATTTTATATACAAAATTAG
GGGGGGTTCTTCAGTCACTAATGCAGTATAAAAGAGCAAATGCCAAAAGT
AAAGCTTCATCAATCAATAAAGCAATCTATCGAAGGCTAACTGAAGATTG
AGCgaacgaaaaaataatgaaGATTACATCTAGCAACATGTAAGTCCTAT
TTTCATCTGGTTCTTTAGTTAGGCTAGAACAAAATTCTTGACTTTGACTA
GTGCACATTTTTATCTTAACAAGcaatacttttatggacctacctgttta
taaaacgaataatgaAAGTTTAATGAAGGCACATGTAGAAACAAAAactg
aataatttaaaattttgcatgTTGGtgccaaaaatcttttttcgaaaaat
tcataTCTAGCACACTGTAATTATacgtctttgtacaaaaaattaggaaa
aactaataaaaagatttttaacaaagtccaaaaaaccctatttttgggcA
TTCTTTGGGCCCAAACTggcccaaaaattattttttttttgaaaatcgaa
ctCCATCACATTTGGTAATCACTATTTTGCACCTTCGTACCAAAAATTAC
agaattcctatgattcaatcccgagaaaagttggtaacaaacgaacggac
gaacagaggttgatttataggacctccaggtaggttcAATAATAAAGAAT
ATGGAAACCTGcccaaaattttcaagaataaCTTTAGAACAATCCGAGCT
TCGGATGcagtagactatgctatagtcaaAGACGAACCACTatttaagaa
aaaagcccaaagctgaagaaaattcGCGAAcagttttttttgccgaaaag
agtttacagtcggtagagttgccagtcgccatttttttccgtataccgcc
ataacgccataccaccatattttcccgcctttactattaCTGTAatggac
gataacatcgtctatttTAGAGGCTGATTTTGAATGTTCGGCAAGTTGAA
AACGATTCGATTTAAAGACCTCAAAATCTTTCCATACTCTAAATCTCCTA
TTCATTCCAGGTTCTCAAGGGTCATCAATGTCTCCAACAATGAAAGCACC
AGAGACTCAAGAAATAAATGCTGACAATGGTGAGATTGATGCAGAAAACG
AGGAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAAGGT
ACGGTTAGAATGATCTCTTTATCAAAAATCCTTTCGAGAATCGGCCCTTA
AAgtgaaaacaatttgaaatttttggattcCTTACAGACATTTTTCCAAG
ATTCGATCGATTTTTGCAAACATTTAAGCCACAACTATCCCCCTTGGTCC
GACCATCAATATGGCTACACTAAAATAAGGAGGGACTAAGGGTTTTTTGG
GGTTTGTGGTGTTCTGATATTCTTTAATATAtacttatttcaattttttg
cttggaaaaaaatctgaaacgttcagtaaaatttttttctcatttcgaAG
AACTCGAGTGATTGGTTACAGCCAAATTCGAAACTCTCTTATTCTTTCTA
TGACTCGAAGAATACTtttgtcccttgaagatcgaattagagagtgtcga
ctattcatgatatgcaccattgcaatgtcttccacggagccaacagttga
ttggttgaaagtgacgtattgactgattttacgtcacttacaaccaatca
gctattgggtccgtgatgtaatctcagaagacattgcaattttccatatc
atgaatataacattattacaatcgcaaattttcTCACACTTCAACAGACA
TTTTGGAAGGTGAAAACAACGGCAACGAAGAAAATGACGATGAGGAAGAC
CTTGCAAAAAGTCGTGAAAAACGTTTTATTCGGTTCCGTAGAATTAGAGT
ACCACTAGCAGGCTGCTATTTTATGGGATGCGTGCATCCTAGAGTACCAC
GAATTCGTATTAGCCTTCGAAGGGTCCGGGATCAAGTCAAATGCCCCACA
AGCTCCTGGTATTGCAAAATTGGCTTGccacaaaatcaagaaaaattgtA
GATGTGGATTTTTCGGATGAACTGTTCAATTtgacttataaaattattct
atcttttttaaattagatGGGTTAGATTTATAGAATATATAAACTTTGAT
AGATTTacaattaaggtcataatatattgagaattttggttattttaacg
tttttcaagatttaaagttctggcgagaaagtcgatttttggctatcttt
ttaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcgaa
tatttcaatttgggaggggttggcagacttccaggctatattctgagtct
tattggactatttttgaacttttggatcctcagatcctaaggtcctaatt
cttaagtttcatgttaaaattcagagttaaaactctacccttccaaccta
ctttagagcacttccaaatcgattgtggttcaaaaacttcccggtggatt
tctcttttttctcaaatattatgaccttgattgtagctgatgattgtcgt
ccatacgggcggcatgaaacttaaagctctgaaacaataaatcaaagcct
ctttcttttaatttgaacaaGTTCTGATATCATCGAGCACTCTCGGCAGA
TAGAAGAAAATAGACTTGTAAACTTTGATAGATAAATTTCAATACTTTGA
AAGGCATAAGCCTTGTCCCCTTTCGCCATTTTAACCTTAATGTTTTGTAG
AGTAAGGTAGAGTAAATAAAGGGATTATGAAACAATTTCATCCTTGTGTG
CAAAActaaattcgaaaagttttaaatttctcGTTTAAAAGCTCTTGTGC
TCATTCTTGAGTATTTACATAGAAGATTTTTGAAAGGTAATCGGGCCCCC
TCTCAAGTCTAAAAATCATATCTATTTACGAACAAATCACATGTGCCACC
CCCTTCTCAtggacccactgggaccccttcccactggaaaattggccaaa
atatcgcccccagtggaaaattatactccaatttatGTCCACgtcgaaaa
taatcaaataagcaaatcctcactgtaaaatatCGTGCtagtttttccat
ccccactgaattttatgggttgaaaacaatggaatttaaatccccagcca
taaaaaacaatATCAATCCCCGTCGATTGTTTGCCTGTTATTTCCTGTTA
TTTCTACCCCCACCCTTGGCAGAAACAATCCtaccggatctgtgagaagg
gtctgtgagaagggggtatcaTATGGTTAGCCCCCACCTATACAGGTAGT
GAAAATCAATCGATAATACTCTCCACTTACTTTCATAGAGCCATTGCATT
GACATCCAATCGATCAACGATCACTTCAAATACAAAATCAACATCAATTA
ATGCTTCCTGAAGTGTTTTAGATGTCTCTACGTCACCCTACGAAAATAAT
GGCACATTAGTCCAGTTAATTAAAGAACCTTCTATCTCTTAGGGTTCGGT
TACAAAAGAT Coding sequence (CDS) from alignment at scaffold_226:117737..121296+ >TCONS_00053099 ID=TCONS_00053099|Name=TCONS_00053099|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_226:117737..121296+ (Clytia hemisphaerica)
ATGTCTCCAACAATGAAAGCACCAGAGACTCAAGAAATAAATGCTGACAA
TGGTGAGATTGATGCAGAAAACGAGGAGGAGGGTGTTATGACTCAAGAAC
TCAAAGATGAAATTGATCAAGACATTTTGGAAGGTGAAAACAACGGCAAC
GAAGAAAATGACGATGAGGAAGACCTTGCAAAAAGTCGTGAAAAACGTTT
TATTCGGTTCCGTAGAATTAGAGTACCACTAGCAGGCTGCTATTTTATGG
GATGCGTGCATCCTAGAGTACCACGAATTCGTATTAGCCTTCGAAGGGTC
CGGGATCAAGTCAAATGCCCCACAAGCTCCTGGTATTGCAAAATTGGCTT
GccacaaaatcaagaaaaattgtAGATGTCTCCAACAATGAAAGCACCAG
AGACTCAAGAAATAAATGCTGACAATGGTGAGATTGATGCAGAAAACGAG
GAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAAGACAT
TTTGGAAGGTGAAAACAACGGCAACGAAGAAAATGACGATGAGGAAGACC
TTGCAAAAAGTCGTGAAAAACGTTTTATTCGGTTCCGTAGAATTAGAGTA
CCACTAGCAGGCTGCTATTTTATGGGATGCGTGCATCCTAGAGTACCACG
AATTCGTATTAGCCTTCGAAGGGTCCGGGATCAAGTCAAATGCCCCACAA
GCTCCTGGTATTGCAAAATTGGCTTGccacaaaatcaagaaaaattgtAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053099-exon-scaffold_226-1491911889:117737..118465 | TCONS_00053099-exon-scaffold_226-1491911889:117737..118465 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1510915933:117737..118465 | TCONS_00053099-exon-scaffold_226-1510915933:117737..118465 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1575043694:117737..118465 | TCONS_00053099-exon-scaffold_226-1575043694:117737..118465 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1491911889:118847..118984 | TCONS_00053099-exon-scaffold_226-1491911889:118847..118984 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1510915933:118847..118984 | TCONS_00053099-exon-scaffold_226-1510915933:118847..118984 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1575043694:118847..118984 | TCONS_00053099-exon-scaffold_226-1575043694:118847..118984 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1491911889:119584..121296 | TCONS_00053099-exon-scaffold_226-1491911889:119584..121296 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1510915933:119584..121296 | TCONS_00053099-exon-scaffold_226-1510915933:119584..121296 | Clytia hemisphaerica | exon |
| TCONS_00053099-exon-scaffold_226-1575043694:119584..121296 | TCONS_00053099-exon-scaffold_226-1575043694:119584..121296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:117737..121296 + |
Blast
The following BLAST results are available for this feature:
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