XLOC_033539 (gene) - C. hemisphaerica

Overview
NameXLOC_033539
Unique NameXLOC_033539
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_226:117737..121296+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033539 ID=XLOC_033539|Name=XLOC_033539|organism=Clytia hemisphaerica|type=gene|length=3560bp|location=Sequence derived from alignment at scaffold_226:117737..121296+ (Clytia hemisphaerica)
TATGACTTACCGCATTTCGTTTCTCATCTAACTTTATACCCCCTGAAATA
TTTATATAGACCATACTAGGAACATTTAGCAATTTTATATACAAAATTAG
GGGGGGTTCTTCAGTCACTAATGCAGTATAAAAGAGCAAATGCCAAAAGT
AAAGCTTCATCAATCAATAAAGCAATCTATCGAAGGCTAACTGAAGATTG
AGCgaacgaaaaaataatgaaGATTACATCTAGCAACATGTAAGTCCTAT
TTTCATCTGGTTCTTTAGTTAGGCTAGAACAAAATTCTTGACTTTGACTA
GTGCACATTTTTATCTTAACAAGcaatacttttatggacctacctgttta
taaaacgaataatgaAAGTTTAATGAAGGCACATGTAGAAACAAAAactg
aataatttaaaattttgcatgTTGGtgccaaaaatcttttttcgaaaaat
tcataTCTAGCACACTGTAATTATacgtctttgtacaaaaaattaggaaa
aactaataaaaagatttttaacaaagtccaaaaaaccctatttttgggcA
TTCTTTGGGCCCAAACTggcccaaaaattattttttttttgaaaatcgaa
ctCCATCACATTTGGTAATCACTATTTTGCACCTTCGTACCAAAAATTAC
agaattcctatgattcaatcccgagaaaagttggtaacaaacgaacggac
gaacagaggttgatttataggacctccaggtaggttcAATAATAAAGAAT
ATGGAAACCTGcccaaaattttcaagaataaCTTTAGAACAATCCGAGCT
TCGGATGcagtagactatgctatagtcaaAGACGAACCACTatttaagaa
aaaagcccaaagctgaagaaaattcGCGAAcagttttttttgccgaaaag
agtttacagtcggtagagttgccagtcgccatttttttccgtataccgcc
ataacgccataccaccatattttcccgcctttactattaCTGTAatggac
gataacatcgtctatttTAGAGGCTGATTTTGAATGTTCGGCAAGTTGAA
AACGATTCGATTTAAAGACCTCAAAATCTTTCCATACTCTAAATCTCCTA
TTCATTCCAGGTTCTCAAGGGTCATCAATGTCTCCAACAATGAAAGCACC
AGAGACTCAAGAAATAAATGCTGACAATGGTGAGATTGATGCAGAAAACG
AGGAGGAGGGTGTTATGACTCAAGAACTCAAAGATGAAATTGATCAAGGT
ACGGTTAGAATGATCTCTTTATCAAAAATCCTTTCGAGAATCGGCCCTTA
AAgtgaaaacaatttgaaatttttggattcCTTACAGACATTTTTCCAAG
ATTCGATCGATTTTTGCAAACATTTAAGCCACAACTATCCCCCTTGGTCC
GACCATCAATATGGCTACACTAAAATAAGGAGGGACTAAGGGTTTTTTGG
GGTTTGTGGTGTTCTGATATTCTTTAATATAtacttatttcaattttttg
cttggaaaaaaatctgaaacgttcagtaaaatttttttctcatttcgaAG
AACTCGAGTGATTGGTTACAGCCAAATTCGAAACTCTCTTATTCTTTCTA
TGACTCGAAGAATACTtttgtcccttgaagatcgaattagagagtgtcga
ctattcatgatatgcaccattgcaatgtcttccacggagccaacagttga
ttggttgaaagtgacgtattgactgattttacgtcacttacaaccaatca
gctattgggtccgtgatgtaatctcagaagacattgcaattttccatatc
atgaatataacattattacaatcgcaaattttcTCACACTTCAACAGACA
TTTTGGAAGGTGAAAACAACGGCAACGAAGAAAATGACGATGAGGAAGAC
CTTGCAAAAAGTCGTGAAAAACGTTTTATTCGGTTCCGTAGAATTAGAGT
ACCACTAGCAGGCTGCTATTTTATGGGATGCGTGCATCCTAGAGTACCAC
GAATTCGTATTAGCCTTCGAAGGGTCCGGGATCAAGTCAAATGCCCCACA
AGCTCCTGGTATTGCAAAATTGGCTTGccacaaaatcaagaaaaattgtA
GATGTGGATTTTTCGGATGAACTGTTCAATTtgacttataaaattattct
atcttttttaaattagatGGGTTAGATTTATAGAATATATAAACTTTGAT
AGATTTacaattaaggtcataatatattgagaattttggttattttaacg
tttttcaagatttaaagttctggcgagaaagtcgatttttggctatcttt
ttaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcgaa
tatttcaatttgggaggggttggcagacttccaggctatattctgagtct
tattggactatttttgaacttttggatcctcagatcctaaggtcctaatt
cttaagtttcatgttaaaattcagagttaaaactctacccttccaaccta
ctttagagcacttccaaatcgattgtggttcaaaaacttcccggtggatt
tctcttttttctcaaatattatgaccttgattgtagctgatgattgtcgt
ccatacgggcggcatgaaacttaaagctctgaaacaataaatcaaagcct
ctttcttttaatttgaacaaGTTCTGATATCATCGAGCACTCTCGGCAGA
TAGAAGAAAATAGACTTGTAAACTTTGATAGATAAATTTCAATACTTTGA
AAGGCATAAGCCTTGTCCCCTTTCGCCATTTTAACCTTAATGTTTTGTAG
AGTAAGGTAGAGTAAATAAAGGGATTATGAAACAATTTCATCCTTGTGTG
CAAAActaaattcgaaaagttttaaatttctcGTTTAAAAGCTCTTGTGC
TCATTCTTGAGTATTTACATAGAAGATTTTTGAAAGGTAATCGGGCCCCC
TCTCAAGTCTAAAAATCATATCTATTTACGAACAAATCACATGTGCCACC
CCCTTCTCAtggacccactgggaccccttcccactggaaaattggccaaa
atatcgcccccagtggaaaattatactccaatttatGTCCACgtcgaaaa
taatcaaataagcaaatcctcactgtaaaatatCGTGCtagtttttccat
ccccactgaattttatgggttgaaaacaatggaatttaaatccccagcca
taaaaaacaatATCAATCCCCGTCGATTGTTTGCCTGTTATTTCCTGTTA
TTTCTACCCCCACCCTTGGCAGAAACAATCCtaccggatctgtgagaagg
gtctgtgagaagggggtatcaTATGGTTAGCCCCCACCTATACAGGTAGT
GAAAATCAATCGATAATACTCTCCACTTACTTTCATAGAGCCATTGCATT
GACATCCAATCGATCAACGATCACTTCAAATACAAAATCAACATCAATTA
ATGCTTCCTGAAGTGTTTTAGATGTCTCTACGTCACCCTACGAAAATAAT
GGCACATTAGTCCAGTTAATTAAAGAACCTTCTATCTCTTAGGGTTCGGT
TACAAAAGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053099TCONS_00053099Clytia hemisphaericatranscript
TCONS_00053100TCONS_00053100Clytia hemisphaericatranscript
TCONS_00053101TCONS_00053101Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00053099-proteinTCONS_00053099-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:117737..121296 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.71	0.98	1.41	1.31	1.27	1.04	0.48	0.86	0.54	0.52	0.67	0.66	0.64	0.71	0.7	0.5	0.55	0.69	0.37	0.49	1.8	1.97	12.84	94.03	15.74	81.92	7.22	7.25	4.84	3.83