TCONS_00052905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052905
Unique NameTCONS_00052905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052905 ID=TCONS_00052905|Name=TCONS_00052905|organism=Clytia hemisphaerica|type=transcript|length=1058bp
CAAAAAAATCATTcctcaaagttctatttcaaaGCTCATTTATGGTAGTG
GCTAATTAAGTCTGAAAttcgactttctcaaaacatggtcatattgcata
ccaaaatATCACATATTTGATGGATTTGGAAAAACATTAATATCATACAT
CAAAAATGAAGTGAATAAAGGTTTTCACCCTTCAAAGCCGTTTTTTGACA
AATACTTACTTCAGTATACTTcagtttgatttgatgatattcATCTGTCC
AGCTCGTTGAGCCCAACACGTGTAATTTGATCGAAAAGAGCATTTGATTC
AGCCAATCTTGTTTGTCGCGACGTAGTGTGAGGTCCGTCGGGTATAGAGC
ACAGAATATATCGAGTCGTTTCTTGGGGCCTATTTGTTTCACTTACTATA
AATGCTGTAACTGCTACTGCCAAAAATGCATGCAACATaccatgaaaact
ttgaaaatgatagtAAATATAGCAAGTTTCTGTTGTCTACCATCTTGGTA
TTGTGGTCGGGCTTACTACTCAAGATTTTCAGAAGAATGTCCGTGAATTA
TAAGTTGGGAAGTAAAACCATACCTTCAACTTCGCAACAAGGGTCACGTG
ACGTTAAtaatgtaaacaaatatggtTTGGATAATTTatgcgagaaaaaa
aataaatactttgTGGTGGGGCAAGTGGTGAAAAGGTGCATCGGATTGTG
AAGTCGCTTTGCGTGGTGGtagaataaataaatattgaattaaGAATAAT
GAGTTTTAAAACATTGTCAGAATTTTGTTGTCAAACAATTGATGCTACAG
CAATTGAAGAACCAAGAGTTCCGAAgttaattttcccaaaaaaatatgTT
CAACCGTTTACTGAAGAAGAACACAACATCAAAGACATCAAAAGCAAAAC
TAAGCCAAAATTCAAACCTCCAAAAAAGTCGACACCAAAGAATAAGCAGG
CAGAGACACTGGATAACACGACGGACAAGAATACCAATTTGAAGTCAAGA
AAGAGAAACATCAAAGATGCCTCGATTAAACAGGCTCTGAAGGACGTGAC
AAATAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_222:282130..283505+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052905 ID=TCONS_00052905|Name=TCONS_00052905|organism=Clytia hemisphaerica|type=transcript|length=1376bp|location=Sequence derived from alignment at scaffold_222:282130..283505+ (Clytia hemisphaerica)
CAAAAAAATCATTcctcaaagttctatttcaaaGCTCATTTATGGTAGTG
GCTAATTAAGTCTGAAAttcgactttctcaaaacatggtcatattgcata
ccaaaatATCACATATTTGATGGATTTGGAAAAACATTAATATCATACAT
CAAAAATGAAGTGAATAAAGGTTTTCACCCTTCAAAGCCGTTTTTTGACA
AATACTTACTTCAGTATACTTcagtttgatttgatgatattcATCTGTCC
AGCTCGTTGAGCCCAACACGTGTAATTTGATCGAAAAGAGCATTTGATTC
AGCCAATCTTGTTTGTCGCGACGTAGTGTGAGGTCCGTCGGGTATAGAGC
ACAGAATATATCGAGTCGTTTCTTGGGGCCTATTTGTTTCACTTACTATA
AATGCTGTAACTGCTACTGCCAAAAATGCATGCAACATaccatgaaaact
ttgaaaatgatagtAAATATAGCAAGTTTCTGTTGTCTACCATCTTGGTA
TTGTGGTCGGGCTTACTACTCAAGATTTTCAGAAGAATGTCCGTGAATTA
TAAGTTGGGAAGTAAAACCATACCTTCAACTTCGCAACAAGGGTCACGTG
ACGTTAAtaatgtaaacaaatatggtTTGGATAATTTatgcgagaaaaaa
aataaatactttgTGGTGGGGCAAGTGGTGAAAAGGTGCATCGGATTGTG
AAGTCGCTTTGCGTGGTGGtagaataaataaatattgaattaaGAATAAT
GAGTTTTAAAACATTGTCAGAATTTTGTTGTCAAACAATTGATGCTACAG
CAATTGAAGAACCAAGAGTTCCGAAgttaattttcccaaaaaaatatgTT
CAACCGTTTACTGAAGAAGAACACAACATCAAAGACATCAAAAGCAAAAC
TAAGCCAAAATTCAAACCTCCAAAAAAGTCGACACCAAAGAATAAGCAGG
CAGAGGCAAGTTTTAAGATCTAGTGATtcgctgtttttttttagtaatga
atagtgatttttttcattttaaggcttttttatgtGATCGTATTTTTAAG
TTATAGCTCCTAAAAAAATCCttgccatgaaattttttgtaattttttta
tcagaaatttTAAGAAGAGCGGGAATCCATGAAAACTTACAATTACGCTT
TCTCTTTAGACACTGGATAACACGACGGACAAGAATACCAATTTGAAGTC
AAGAAAGAGAAACATCAAAGATGCCTCGATTAAACAGGtacatacactct
tttttataagaaccagaaaATTAATCTGTATGTGTAATGTTATTATTGGA
AAATAAAGATTAATAATCTATTAAATCATGTAATATTTTCTATCCTTTAA
GGCTCTGAAGGACGTGACAAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033428XLOC_033428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052905-exon-scaffold_222-1491911889:282130..283084TCONS_00052905-exon-scaffold_222-1491911889:282130..283084Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1510915933:282130..283084TCONS_00052905-exon-scaffold_222-1510915933:282130..283084Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1575043694:282130..283084TCONS_00052905-exon-scaffold_222-1575043694:282130..283084Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1491911889:283289..283366TCONS_00052905-exon-scaffold_222-1491911889:283289..283366Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1510915933:283289..283366TCONS_00052905-exon-scaffold_222-1510915933:283289..283366Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1575043694:283289..283366TCONS_00052905-exon-scaffold_222-1575043694:283289..283366Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1491911889:283481..283505TCONS_00052905-exon-scaffold_222-1491911889:283481..283505Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1510915933:283481..283505TCONS_00052905-exon-scaffold_222-1510915933:283481..283505Clytia hemisphaericaexon
TCONS_00052905-exon-scaffold_222-1575043694:283481..283505TCONS_00052905-exon-scaffold_222-1575043694:283481..283505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:282130..283505 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.281954	0.116351	0.416267	0.203626	0.795273	1.38858	1.92988	1.33267	1.56083	1.07691	0	1.28071	1.85017	2.16519	1.11384	0.933933	1.18407	0.754928	1.71157	1.00816	1.43127	2.70957	0.11494	0.712839	4.71303	4.27447	0.663614	0.746557	0.642119	0.443405
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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