XLOC_033428 (gene) - C. hemisphaerica

Overview
NameXLOC_033428
Unique NameXLOC_033428
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_222:282127..292810+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033428 ID=XLOC_033428|Name=XLOC_033428|organism=Clytia hemisphaerica|type=gene|length=10684bp|location=Sequence derived from alignment at scaffold_222:282127..292810+ (Clytia hemisphaerica)
GTACAAAAAAATCATTcctcaaagttctatttcaaaGCTCATTTATGGTA
GTGGCTAATTAAGTCTGAAAttcgactttctcaaaacatggtcatattgc
ataccaaaatATCACATATTTGATGGATTTGGAAAAACATTAATATCATA
CATCAAAAATGAAGTGAATAAAGGTTTTCACCCTTCAAAGCCGTTTTTTG
ACAAATACTTACTTCAGTATACTTcagtttgatttgatgatattcATCTG
TCCAGCTCGTTGAGCCCAACACGTGTAATTTGATCGAAAAGAGCATTTGA
TTCAGCCAATCTTGTTTGTCGCGACGTAGTGTGAGGTCCGTCGGGTATAG
AGCACAGAATATATCGAGTCGTTTCTTGGGGCCTATTTGTTTCACTTACT
ATAAATGCTGTAACTGCTACTGCCAAAAATGCATGCAACATaccatgaaa
actttgaaaatgatagtAAATATAGCAAGTTTCTGTTGTCTACCATCTTG
GTATTGTGGTCGGGCTTACTACTCAAGATTTTCAGAAGAATGTCCGTGAA
TTATAAGTTGGGAAGTAAAACCATACCTTCAACTTCGCAACAAGGGTCAC
GTGACGTTAAtaatgtaaacaaatatggtTTGGATAATTTatgcgagaaa
aaaaataaatactttgTGGTGGGGCAAGTGGTGAAAAGGTGCATCGGATT
GTGAAGTCGCTTTGCGTGGTGGtagaataaataaatattgaattaaGAAT
AATGAGTTTTAAAACATTGTCAGAATTTTGTTGTCAAACAATTGATGCTA
CAGCAATTGAAGAACCAAGAGTTCCGAAgttaattttcccaaaaaaatat
gTTCAACCGTTTACTGAAGAAGAACACAACATCAAAGACATCAAAAGCAA
AACTAAGCCAAAATTCAAACCTCCAAAAAAGTCGACACCAAAGAATAAGC
AGGCAGAGGCAAGTTTTAAGATCTAGTGATtcgctgtttttttttagtaa
tgaatagtgatttttttcattttaaggcttttttatgtGATCGTATTTTT
AAGTTATAGCTCCTAAAAAAATCCttgccatgaaattttttgtaattttt
ttatcagaaatttTAAGAAGAGCGGGAATCCATGAAAACTTACAATTACG
CTTTCTCTTTAGACACTGGATAACACGACGGACAAGAATACCAATTTGAA
GTCAAGAAAGAGAAACATCAAAGATGCCTCGATTAAACAGGtacatacac
tcttttttataagaaccagaaaATTAATCTGTATGTGTAATGTTATTATT
GGAAAATAAAGATTAATAATCTATTAAATCATGTAATATTTTCTATCCTT
TAAGGCTCTGAAGGACGTGACAAATAAACCATCAAGCCCGTCAAGCACTT
AGACTGAATgtgaaaagaagagaaagaaaagcaaaattgatttcaaactA
GTAAGTAGgatattctttttttgattATACCGATTTATACGCTTTAACTT
TATTAGCATTTGCGACGATTTCTGCATAATCTGGTAAACAAAGCCACGCT
AAACTAAAGACTCGCTGACATAATGTCCCCCACCCAAGGGTGCAGCAAGA
TGCCTTGACATTGAAATGAATAAGGAAATAAGGTTAGGGTGGTAAATATT
TCCTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATT
TCGTATGTCAGAGGGAATACTGTTGAAGAGTTTTGGACCCTGTACAGCTA
AGCTCTCACAAATAAATTTGCGAAAGCTACTTTGTTCGATTGTTCGTAGT
TGGCATTTTCGACCATGACGGCTTGTAGTTGAAGACGAGACACCACCTTT
TACAGTGCTGTTTCCTTCAGtgtggctgaaattttgtactATACCCTCTA
GTATCgacaaaatataaataattctGTATCTCTCCCTCCTCCTTTGCAga
gaatatattttcaaaattctcaatTGTTCCCAATAATCGAAAGCACTAAg
gcctttgattttattgaagaagTTCTTTTGTACGGATTCAATCTGTTCAA
TTTGGTGGATGCTGTTTGGTGACCaaagctgagaacagtagtcgAGGTGA
GGGAAAACTAAGAATTTCCATAACGTTATCATAATATCACTGCTTCTGTT
GTCGAATGTTCTCAACAAGAAATGTCCTTAGCTTTTGCTATCATTTTATT
GATGTGATCTGTAAATGAGCAGTCACTACTCATCCACACTCCAAGATCTT
TGACagagtttttgttttcaattacaGTTTTGTTGTTAGTGAAATAGGtt
gataaactttttgattCAGTATCTTTACCGTATTTTAAATGTTCGAATTT
ACAACTATTTAGTTTCATGTTATTGTTCTCAGTCCAATCATAAACTATGT
TGAGATCATGTTGCAACTTGAACGTGTCAATTATTCCTTGGATTTCTTTA
AGCATTCTAGTATCGTCAGCAAAGCTTGCAAGGATTGAATACCTGATAAA
TTATCATCAATATCAGAAATCATCAGAAGAAACAAAATTGGCCCAAGTAC
TGTTCCTTGAGGTTTTCCTGGTATGACAGGGACACTGACGGATTTGAAGC
CATTTAAAACAACAGATTGTTTTCTGCCTTTCAAAAACGATTCAATCCAT
CGCAATAGCTTTCCTTTGATCCCGAGCTGAGACAATTTATGTAGCAAAAT
TGCATGATCAACTTTGTCGAATTCCTTACTGAAGTCCAAATAGATTGTGT
CGACATTAATACCTCTCTCAAGGTATGATAGTAATTGTATCATAATGTTC
AAGGAGTTGACTCAAACAAGATCTACCTTGTCGAAAGCCATGTTGggagt
cattaaaaatgttattctcttctaccgggtgcaccaaaaaaaagtataca
ggtatGTCGNTTAAAAATGTTATTCTcttctaccgggtgcaccaaaaaaa
agtatacaggtatGTCAacatattgtgagcttcaggatttaaattttttg
ttcattcttttttttatcgtatagaggatgctttaacttaaattttgagc
tatcatatattaaatttgaaaaagtagtttgaaagttattttaaaaaaac
tgaGTTTTTTTGGGATGAGccggagtttttacaagatacttcactaattg
gtcatttgaagtgatagagatgacgagttctttagaaaaagtaacaaaat
tgttttattactggttaacgaccaaccaaatcaaataagagcttgtaaaa
actccagcttgtcccgtttttttccatgtcgaaatttcaaaaaatcatta
aaaacagcaatcacgctataaataagacaaaatgtaaaaaaacacaattt
tattgtttttttttattctttcttttcttatttatatttcCCCGCAACag
tttctccatcttatttgcacgtcatgaacattcccaaaacaagcaaactc
aatacagacccaagttctttgagcaactagtcgaggaatggtgatttatt
ttttaaaagtttttctcacATACcacacacataacatcaaaaccactctt
ggagatttccaaaactttttttcagctttttcaaaaatattatcctacat
gggaatagcttgttttaccatattctcaAATTCCATAacaagttttgatg
aacacagttgcattttttggtatttttatgtgcaAAGAAGataagtgtca
agagaaaagtttgctcgctgtttttgatgattttttgaaatttcgacatt
aaaaaaaagtcagtttttttaaaataattttcgaactaccttttcaaacc
taatgtatgatagctcaaaattcaaattaaagcatcctctatacaattaa
aaaagaatgaacaaaaaaattaaatcctgaagctcaatCTTGATGGATGA
CCGTGAGATGAGTCATCTGGTTGTCGATAAATAACAGATATCAACATGTT
TAATTTCTTGGAGTGAACAATTAGCAGTTCATTCACACCGTTTGAATACT
GCAACACTGGTTTAAAGGTTGAACTTATGTCGTTTCTAATGTATAGTGCT
ACTCCTCCACTAAACAGgcgcaattgcattatgggtatggaatcctgaaa
aatacaaaatattgttttgggaatggatttctagcaagtatttgatcaat
tgaatcacggttcagcacctgaattgcaattttacagtttcagtaagttg
tgaGCAAGGGATCAATGTTTGTAGGTTACTTACTTGTGTTACTTGTGTAG
TTGTTTGAGCATCCTGCTTCAGGTAAGGTTCTTGGTGAACCACGCCTCCG
TGTGATCAATCTGTCGAGAGAAAAATAATCTcagcagatatttttcatgt
caattattgaatttgaattagctCTCCTGCACCCAGTATATCCATGGATC
TGGGGTTCATCTGGGATAGACTTAAGGTGTGTGTCCAGGGCTCTTTTGAA
TTTAtcgatagaaatatttttgaggtTTCTGATGCTCTTTGGCATAGCAT
TAAAATGTTTTGCACCTTGCACTGCAAGTGTGCTGTctctaaattttgat
gtttggttctTTGGAATTGACAGTGTACACATCCGGCCCAGCCGGGGGTT
TTCAGTGGTTTTGATACCATTTACAGTAGGTACAATCTTTTCCATCACCT
TCAAGACATACATTCTTCTATAGCGTTCTCTTCGCCTTTGAAGTGAGtaa
atttttgtctgttttagacACTCCCAATAATTGTTTGGGGTGCCATTTAT
CTTTCATAAGAAGGACTTTTGAATATCTTCAAGTCTCTGAATGAGACCAA
CTGCATTTGGGCTCCACAGAACGGAGCAATATTCTAATATTGGTATCACC
AATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGTACGA
TCATACAATTTAAAGATCGTGAAGAAAAAGTTCTCAGGATCCAAGATGTT
AAGTTTTTAGCCTTTTCGATTACTGCAGTAATTTGCTTCTGAAATGTCTT
TCACAACATCATTGTTTTCAATCTCAACACCAGACGGTGATGTATAGCTT
GTTTGAGTCTTGATCTCATGGTTCTTTCCATAGCGCAAGagttcaaattt
tatatcatttagCTTAGCTTCATATTGTTGTCATCCGTCCATTTATATAT
TCTATCAAGATCGTTTTGAAGTAGGAcaggttttaaggtgtattagtgta
ggttttaaggtgtaatttgattttaacgtacagttttgaaaatatttacc
aATGATCTAATTTTAGCGTTAGTAACTTttcagtgaatcactgttcaaaa
tttgagaccaaaaggactattttataaaaagttgttcaagaaaaccattt
tgtaggttttaaggggtaaatcgctaaaattgcattttttcacaaagcaa
taaaatttttcttagcagcttttacaaaataccatagccagggaagaaat
tcataggtagcctagactcaccagaaaaagtttcagcccttactgttttc
tctatcaggatatagggggtacctttttttgttgtaggttttaggggtat
ccactggtatagGAAAGGGTCGGATATTATCTTGgttatgttttgaaatt
taattcttctgtaaaacaatgaaatgtgTGATTGAAGTAAAGATGGTGGG
TGAAGCGAAGGATGGAATTGGATAAAATTCCAACAAGTTTACAACTTTCC
AACTCAAAATAGTCGGAAAATTAGGAGTCGGTCGGACAATGCGAACACAA
GTTATATTTGTGATTGTGGCCTATAATGTCGAAACCCCACCCTCTTCAAA
TTTCAACACCTTTTTTATTTAAGAGTTGGGAATAATAGGAGGGTCCAAAT
CGCTGGTTGAAActatatttctttgcttagccATCAGAGagaagaaaatc
ttttgtttatcAGCGATTCCAACCTTTCTTGGTATTATtcacatctttta
taagcaaccatgtgcttataaaaattgaaagttccGACTTTGGGCCCCTT
GGctaaacccgacttttcttaaattttgggaagcttaggctttcaagagt
caagaaattggatttagctgtttttacgacccttcttttttttttggggg
gggggctggaattAAAGTTTGTGATTTACAACTCTTCATAGCATAATTCT
GAACGTGCAAAAAGgtgcattctttttgctatctcagtgaaaaaccctta
ttcaatattcgacactctaaaatcttttgtttttgaacAAAAGTGACGTC
GAAAAAAAAGACTTCTAGATTGtaaatttaataataataataaagcttta
caggtttgcaggccaccgtgaagacacatgggcctctataaaccgttcgt
actttttacaatgatcttttttaAATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNttttccgtcacggcgcaaCGCAAAC
TTTAAAGTACACTAAAAAATTACcttggtgttttagagtgaaTTCTTTTA
GTGATTCTCAACAGTCCTATAAGTCTAATAttgtaaacatttaaaaactg
aaaaaattctgctttgttcaattttatttagaaattatgattttccgtca
cggcgcaaCAGAATTTTAGACCCCAAAAAAACTCCATTGGACATCTGAAA
TGATTTAATTTCTTCAGTAACttcaaaattatcaatatttaaaaacattt
ggtaAGGTAAACTACTTTGTAGCCTTTATATGCTCATTATGTTCATACAT
AATCAGACATAATGAACCTGCTGGAAAATTGCTCACCTGGACCCCCGAAG
AAGATCGACGTGTTGGTAGACCGAACATCACCCTGCGACAAATCCTTGAA
GATGACACTGGACTCAGTGGCAAAGACCTCGTTACAGCCATGTCCGATCG
TGAAAAATGGAGAAAAGACTTTGTATACTTCACCTAACGGATGCATCAAG
TACAAGTAATATGctcattttgtaaaaatcttaatttttgtgAGCTTTCC
AGggattttagcctggaaatcgGGAATCTGGTCATAACTTTTCAATGGAG
CATGTTCCTGCTCTGATTTTTTCACATATTGCTCATGAAATGATATTCTT
TATgtctaaataaaattttttgacattttgaaaacttcattttttgccat
ttttcagattttttgggacgagctttttgcttattgctacgtcttgtgct
ttcaaatggtttatttcttcgtcctgccttttcattatattctcacaggc
tttgatttcgtttttgaatccttcaatttttgatgtttcatttgaattat
acctttccattacctgtggtgcgattttggtacagttttgACACTGGAAA
CTTCTTGATTTGTATGACAAGCATATCTGCATCTGGTAAAGTGGCAGTTC
TGAACAAAGATAATGGACTAAACGGTGGCACTTCCTGCATTGTAGGGTAT
CTTTTAGtgcgttttcttcatttatgatgcactttGACAGGCTGCAAAAG
TCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
AAAGTCgtttattgatggtgatttttgattattttcttgaattttttccg
ccatctttgtgcatttttcagacgacaaccgttcagttttgtatttgacg
tcaacaatttattttatagattcggactattatACTGTCGGAccagaaag
tgtcggactagtgacatgctgACGACCCCCCTGCTGCATGCCTGGACTGG
AATCAATCGATTGGTTTATCGATTGTTTGTGGGAAGGGAAGGAAGAGAGT
CTGGATTAAAATACACTCAATGTCAGAAAGcctatttcaaatttaaattc
aaaCACTTACATTAAATTTACCTGATCTGCTGATGGTTCTGgttttattt
gaatatttgtCGTACCTGGTAATTGCAAGTTCCATGcttttgatttaact
ttctCATCAACAGGTAAGAATTGTGATTTTGAATGTCTTTTTATTGAACT
TGACTGTAAGATGCTTGTAGGGGTAGTATATAGACATCCTGAtaacaaaa
tacaaattttcaatgATGAGTTTGAGAAAAGAGTTcttgaaagaataaaa
aatgaagataagAAGGTTATTATTATGGGAGATTACAATATAAATTTAAT
GAACTGTGAATCTCATCGTCACACAAGTAATTTCTTTGACAAGATGgttt
catttaattttcttcCATACATAATCCAACCAACTAGATTTAATGGTAAC
TCTCACACTCTTATcgacaatattttttataacgACATTTCCAATGAATG
TATCAGTGGTAACTTAATTCCTCATATCACTGATCATTTGCCAAATTTCC
TTTTTGTACCTCATTCTGATAATAAAAtaacacaaaaatttaaaaaaata
tcaaaaagagaCTTCTCTGATTTTGATATCTTACGCTTTAGGgaagatct
ttcaaatattGACTTCACCAACAAATTCCTTCAGATGGAAGATGCTAACC
TAATGTATGAATTTTTTCATAAAGGCATGAATCTTTTATTTGACATACAT
GCCCCATTTAAActattgacaaaaaatcaaagaagaaaagaaaaaaaccc
ctGGATGACCAATAAGATTCTtaacaaaataaatataaaagatGCACTAT
ATGGGCAGTTTATGAAAGACAAAGACcaacaaattttcaaagaatatcaT
GAGATCTTGCGAGAGTTAAACAAAGACATACGTAAAGCAAAATTCATCTA
CCTCAAAAACAAATTTACACAATCAAAGaatgacatcaaaaaattttgga
aaaatatcaaCACCTTCCTTGGTAGAAATAAGACCAATCATTACCCAAGA
ACTATGACTCATCAAGATAAAACATTTACTGACTCTCATCAGATTAGTGA
AGCTTTTAATAAATACTTTTCAGAGGTTGCTCCAAATCTTctcaaaaaaa
ttcctaaaaacaCAACTCTTAAACACAAAAACTACCTTACTAGGATGCAG
TATAACAACTCTAGCTTCTTTTTCCAACGAACCAATAGGTATGAAGTCTT
AACACACCTTAACAACATAAACAGTAATAAAGCCAAGGATATTTATGATT
TCCCTACACGGATTATCAAAGGTATTGCTGATCTACTAGCTGATCCTCTT
GCTATTATGATAAACAACTCCCTATCCACAGGTGTTTTCCCTGAACTTTT
AAAACATGCTAAAGTAACTCCTCTCTTCAAAAGTGGACTTAGAAATGATA
TAAAAAACTACAGGCCAATATCTGTTCTCCCAATTTTTGACaagatcttt
gaaaaaattgttcATGAAAGAATAACTAAATTTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00052904TCONS_00052904Clytia hemisphaericatranscript
TCONS_00052905TCONS_00052905Clytia hemisphaericatranscript
TCONS_00052906TCONS_00052906Clytia hemisphaericatranscript
TCONS_00052907TCONS_00052907Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00052906-proteinTCONS_00052906-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:282127..292810 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38	1.4	2.26	2.11	3.98	3.15	4.12	3.7	3.01	3.18	3.41	2.95	3.66	3.15	1.89	1.8	1.87	1.55	2.6	1.64	2.99	3.73	0.84	1.75	6.6	6.62	2.4	1.47	1.44	1.11