TCONS_00052651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052651
Unique NameTCONS_00052651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052651 ID=TCONS_00052651|Name=TCONS_00052651|organism=Clytia hemisphaerica|type=transcript|length=523bp
TTTCGAGCTATTTGTAGTTTGACCACGGATCAATTAAAATCCTTTTTACT
CAAGACGCGAAGCGGTAAAAAAAGCTCACAAAAACACGATTTCAACTAGC
AGAATCCAGCAACTTTCTGAAATTACCTCGTAAATAAATCCTAACAATGG
CTTACACAAGTGGAggaagcaaaaagaaaatttgttacTATTATGATGGT
GATGTTGGAAACTATTATTACGGACAAGGCCATCCAATGAAACCTCACCG
TATTCGCATGACacacaatttacttttgaactATGGACTTTATAGAAAGA
TGGAAATCTACAGACCACACAAGGCTTCTTTTGAAGAAATGACAAAATAT
CATTCTGATGATTACATCAAATTTCTACGAACAATTAGACCAGAAAATAC
TTCAGAATATAACAAGCAAATGCAGAGATGTAAGTTACAAATCATCAAAT
AATTAACATGTTTGTTTTCAAGTTTCTTGTAATTTCTTTGAAGGGctgtt
attatttatttttaaaagagtAT
Run BLAST on NCBI

protein sequence of TCONS_00052651-protein

>TCONS_00052651-protein ID=TCONS_00052651-protein|Name=TCONS_00052651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MAYTSGGSKKKICYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYR
KMEIYRPHKASFEEMTKYHSDDYIKFLRTIRPENTSEYNKQMQRCKLQII
K
Run BLAST on NCBI

transcript from alignment at scaffold_218:897252..903908+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052651 ID=TCONS_00052651|Name=TCONS_00052651|organism=Clytia hemisphaerica|type=transcript|length=6657bp|location=Sequence derived from alignment at scaffold_218:897252..903908+ (Clytia hemisphaerica)
TTTCGAGCTATTTGTAGTTTGACCACGGATCAATTAAAATCCTTTTTACT
CAAGACGCGAAGCGGTAAAAAAAGCTCACAAAAACACGATTTCAACTAGC
AGAATCCAGCAACTTTCTGAAATTACCTCGTAAATAAATCCTAACAATGG
CTTACACAAGTGGAggaagcaaaaagaaaatttgttacTATTATGATGGT
AAGAGATTGTACTTTTTACGTTAATAGTTTTAGCCAAGGTTTCCACTTTT
TAGACAGAAGCACATCTGGTATTTTTCTGGCAgttagagtcccctgccca
gttggagACCGgtccagttggcgaccgaacgtctttgaacctagaaaagt
catacaaaaacaaacctctggagaatttcttttggtagtaatctgccttg
acctatttcccgtactgtgtaaaaaaaattctagaaaagaACGAGTAcaa
tccgaaagatccaactttgcaacgacccacggcatggcccgaacatgttc
gggcctgttcggaccatgctcgggccacaaaaaagtatcattgaatcggc
ccgaacattttgttcggaccatgttcgggccatgtatttacaattaGCTA
TCATGTCTTTAAAGGAACATCATAGGAatagtagaatttaattttattta
cctttcctggtttatcatcatccattgttaaatattttcattagacNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgcttcgaat
aggagaagaccacgagaaaagggaacgggataaagaataaaaagaagacc
atattatgtaagattcaaatcattctttttaataattttccaaacttaat
tggaaaaatgatgattaacttttatattagaacaatatatatttgaataa
agatgaagatttttaaatttgtttgctaaaataaggaatttaaaatataa
atattgggtcctgaaattacacccGCGATCGTAGCAAGTATTTNNNNNNN
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NNNNNNTTGACGGTAGccatcaaagcagcaaaatctCCACTCtcctactc
taccatttttgttttgagataactttgtattttaatgaccagccaggtca
ttcatttgagggctatccATTATAGCCTCAACTGATGGAAGTTACCCGAC
CTCACGGtacattgggaaattccctaactgcaattgcgcacatgttaccg
tcaactgctctaacatgggactatctgacaaaagatgggcagtgtagacc
taactcttcatacaaaaattacgggaaacacatatttggactttgtaccc
tatgctgcacgccaGCACTTTAAAGCTGAAGTCCCGGAAAAGCGggataa
aaatcagttttttgcagtttgcaaaaaaatgccacatagaagatctttca
aattcagtatgtgaataaatagagcagtaaaaaatacaacttttctattt
ttccttttttttgcaaaagttctagaaatgaaaataaaaggataatgata
attgaatactatccactgatgatccgagGTGCCATCgcaaagctagaatc
gcttcgcgtactcttcgcttgagaaaatgattgacagattaaatttTTCC
CCCACGCGGGAGTTCGCGGGCGTTCTGCGAGCGGTATGCGAGCTGTAtgc
gagcgttctcggctcaatcctcagaccgtgttaaaaatggtagactcagc
tgtgacagatcatttcgatggaagttgttggtatgtttacaagactcttg
acagaaaatcttttgttttattgtcaatgatgacagtgccgttattaatt
ttgttagatctgatatattgatgtttgtaagtgcactttatagttttgat
tcccatttgaagaatcatattctggttttcatgttattagatgctgtttt
agagctttagagagCTACACTGATGGGACGGCAAGtcggccaccatttca
tcgaacctccaaagtcatttgatttgagttaaggaatggcgtatttaaaa
atacacgatttctctttcgattttacagtaagtgaaaatacagaccagat
atgcaacagtcccatgttttgaccaatcgtcccaaattagagcagttgac
ggtagcttttttaggcttatgcaaataaatggatAGAAACATCTAATTCC
TTCTTTCCAATTTAATCACACAAAACGCTCATAAAACGAGAAAGCAAATA
TTTTCAGTTCTTATTTCAGTTTATGTTGATAAAACAGACACCCAGTTCAT
GCTCAAAACTTCCTGTTTGTGCATATTTTTTTATAGATATGGTTtttgca
gaaaatgtttttgagaatgCCAtggataataaaaataaatggtttttaca
attttaaatgCTTTACACACTTAAGTTTCACTTtgtgaatatttaaaaca
tagtaaaaaagtttgataatttATTCTTATACTGTAACCTTTTTTATGGG
AATTCTTTAATTTTAGCAAATAGAATTCTAGCTTGGCTGACAaccaaaca
aaaacttttcatgttgaGTTTTCTCTAGTTTGTTACACTACAAAATAATT
AACTAGAAATGTTTACATTATAGTCCGGCGGCGAAAAGGGCCTTTTTGCA
TCAACCCttacaagtagtaaatatgggtttttattttattttctcccttg
ggaccccaaaaccggtttttgtCAAGCTGGCAAAgcgggggaaaattttt
tatgggggcttgaagtactatcgattagaggggtcatttataaggtttcc
taggctagatcatgagatatttgagtttgaaattttgctgattaagcgtt
tttcaactttttagcccttttctgctgagtcagcaaaatttcaaactcta
atatctcatgatctagcctaggaaaccctataaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGGTtgtaaaaatc
gaatttttttatttggggaaattcctttttgctatatttagggaaaatga
gcctaacatgggttttttggactttggggAAGATCACCTTTTATCATCAA
TACAATAAAATATTCATTCACCCCAGTATCTACGACTATAAGTCATACGA
CTTTAACTATACTTCACAGACTGTTGATATTAatttgagctgtgatactc
acgataatctattcaagctgctcactacAGTTTTTTATTCTCTTGCTAGT
TGTCCTATCTTTATCTGATTCTCGTCATCAGGTAGGTCctttcagcatgt
tgcttgttgtttttgtatatacATGTTTTTACCTCAAAAGTTTTTCTACC
AAAAAGGTAGAACTTGGGTTTGTTGATTGAGCTTCTTAAATAAGTACTGG
CGTTAAATTACTTCAATTTTAAGTCAATTCTATGAGTGCTTCAAAAAACT
GAGTTTTGGGATCGAAAGCCAGCCAGCTGGGTGAGTTTTTTTGGTCACCC
AGTGATTATTTTACTTTCATtgaagaaaagttttatttcttGCAGGTGAT
GTTGGAAACTATTATTACGGACAAGGCCATCCAATGAAACCTCACCGTAT
TCGCATGACacacaatttacttttgaactATGGACTTTATAGAAAGATGG
AAATCTACGTAAGTATTTGAGTATTTTTCTATCCTGTGTCAAAGGTTTCA
TGAAACTAAAAATTCGCTCACTGTATTTGCAGCTCATGGCCTAGAAAAGC
AGCTAGCAGTAACTCTCTTTGCATTAAGTACTTCATTACCTATATAAAAA
ATAGTTTAACACTcgtgttttttggacctacctggaggttctataaatta
aaacctgtgttcgtctgttcgtctgttaccaacttttctcgggattgaat
catagggattttgtgatttttggtacaaaggtgcaaaatggtgaatacta
aaatgtgatggagcccaatttttgaaaaaaaaattttgggctaATTTGGG
CccaaaaatgcctaaaaatagggttttttggacttaaaTAATCTGTTCAT
TTGTTGTTCCTAATTAACAGTGTGCTAAACATGAaaaagttcatatttat
aaaaaaaattttggcaccaacttgcaaaattttaaattattcagtTTTTG
TTTCTACATTGCCTTCATTAAGCttttattatttgttttataAACGGTAG
TATCGCTTGTTATGTTGAGAAATCACATTCTTGATTTCTCTTTAGAGACC
ACACAAGGCTTCTTTTGAAGAAATGACAAAATATCATTCTGATGATTACA
TCAAATTTCTACGAACAATTAGACCAGAAAATACTTCAGAATATAACAAG
CAAATGCAGAGATGTAAGTTACAAATCATCAAATAATTAACATGTTTGTT
TTCAAGTTTCTTGTAATTTCTTTGAAGGGctgttattatttatttttaaa
agagtAT

Coding sequence (CDS) from alignment at scaffold_218:897252..903908+

>TCONS_00052651 ID=TCONS_00052651|Name=TCONS_00052651|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_218:897252..903908+ (Clytia hemisphaerica)
ATGGCTTACACAAGTGGAggaagcaaaaagaaaatttgttacTATTATGA
TGGTGATGTTGGAAACTATTATTACGGACAAGGCCATCCAATGAAACCTC
ACCGTATTCGCATGACacacaatttacttttgaactATGGACTTTATAGA
AAGATGGAAATCTACAGACCACACAAGGCTTCTTTTGAAGAAATGACAAA
ATATCATTCTGATGATTACATCAAATTTCTACGAACAATTAGACCAGAAA
ATACTTCAGAATATAACAAGCAAATGCAGAGATGTAAGTTACAAATCATC
AAATAAATGGCTTACACAAGTGGAggaagcaaaaagaaaatttgttacTA
TTATGATGGTGATGTTGGAAACTATTATTACGGACAAGGCCATCCAATGA
AACCTCACCGTATTCGCATGACacacaatttacttttgaactATGGACTT
TATAGAAAGATGGAAATCTACAGACCACACAAGGCTTCTTTTGAAGAAAT
GACAAAATATCATTCTGATGATTACATCAAATTTCTACGAACAATTAGAC
CAGAAAATACTTCAGAATATAACAAGCAAATGCAGAGATGTAAGTTACAA
ATCATCAAATAAATGGCTTACACAAGTGGAggaagcaaaaagaaaatttg
ttacTATTATGATGGTGATGTTGGAAACTATTATTACGGACAAGGCCATC
CAATGAAACCTCACCGTATTCGCATGACacacaatttacttttgaactAT
GGACTTTATAGAAAGATGGAAATCTACAGACCACACAAGGCTTCTTTTGA
AGAAATGACAAAATATCATTCTGATGATTACATCAAATTTCTACGAACAA
TTAGACCAGAAAATACTTCAGAATATAACAAGCAAATGCAGAGATGTAAG
TTACAAATCATCAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033268XLOC_033268Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052651-proteinTCONS_00052651-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052651-exon-scaffold_218-1491911889:897252..897449TCONS_00052651-exon-scaffold_218-1491911889:897252..897449Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1510915933:897252..897449TCONS_00052651-exon-scaffold_218-1510915933:897252..897449Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1575043694:897252..897449TCONS_00052651-exon-scaffold_218-1575043694:897252..897449Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1491911889:902997..903109TCONS_00052651-exon-scaffold_218-1491911889:902997..903109Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1510915933:902997..903109TCONS_00052651-exon-scaffold_218-1510915933:902997..903109Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1575043694:902997..903109TCONS_00052651-exon-scaffold_218-1575043694:902997..903109Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1491911889:903697..903908TCONS_00052651-exon-scaffold_218-1491911889:903697..903908Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1510915933:903697..903908TCONS_00052651-exon-scaffold_218-1510915933:903697..903908Clytia hemisphaericaexon
TCONS_00052651-exon-scaffold_218-1575043694:903697..903908TCONS_00052651-exon-scaffold_218-1575043694:903697..903908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:897252..903908 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
285.517	260.134	535.511	495.378	499.464	426.109	181.868	186.446	89.0228	104.372	100.963	89.4703	105.051	99.6539	91.7451	95.1517	121.46	116.234	32.1887	35.1914	75.3768	78.168	132.657	144.278	139.262	159.907	59.9567	44.1463	75.7453	75.3837
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003084His_deacetylse_1
IPR023801His_deacetylse_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004407histone deacetylase activity
Vocabulary: Biological Process
TermDefinition
GO:0016575histone deacetylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016575 histone deacetylation
molecular_function GO:0004407 histone deacetylase activity
Blast
[Close]
BLAST of TCONS_00052651 vs. Swiss-Prot (Human)
Match: HDAC2 (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.784e-40
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 3 
Query:  147 MAYTSGGSKKKICXXXXXXXXXXXXXXXHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASFEEMTKYHSDDYIKFLRTIRPENTSEYNKQMQR 428
            MAY+ GG KKK+CYYYDGD+GNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA+ EEMTKYHSD+YIKFLR+IRP+N SEY+KQMQR
Sbjct:    1 MAYSQGGGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQR 94
The following BLAST results are available for this feature:
BLAST of TCONS_00052651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC21.784e-4087.23Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=... [more]
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