TCONS_00052450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052450
Unique NameTCONS_00052450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052450 ID=TCONS_00052450|Name=TCONS_00052450|organism=Clytia hemisphaerica|type=transcript|length=1447bp
ttttttttgaacgtTTAACTTTCATATCATTTTAGTGAATTAAAATAGGA
ATTCatataaagttataaaaaatGGCAGGTGAACTTGATCGACAGTATAA
ACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTGACCATTC
AATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTATAGAAGAT
TCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATTTAGATAt
TCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAGAACAATATA
TGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGACAAATCA
AGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCGTGTAAAAGA
CAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGATTTGGAAA
ATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACGAAAATTA
AAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAACGTCGACGC
AGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACGAAGTCATCG
AATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATTTTGTAAATT
GGAAAAAGGAAGGAAGAAACATTATTACCAGCCaaattctttttcacaaa
aaaaattatccacgTTGTAATAGTcatcatcaaatttttcaatcaatcta
CTGCAAGGATCAGGGATCCTCGTTTCTATAATCTATACAGGCTAAAGCAA
AAGAACCGACCCAATATAACATGTGCTGTCAGtgatgtttttttaaaaaa
cgaaGTGAATCAAAGTTGATGAACTCTATCGACTGGATTTTAAAGCCAGA
TACTGGACAATGTGTAAACATAAACAATATATGAAAGTACATAGAGAGAA
AAactaattattattattataactattattattcaatttcattttacaat
tttttgatttttttgtgcctttttttagttctttttttttcaatttatta
tgTTGAACCATACAAATCAATTATCCTTTTACCGcatgaataaaaaattt
acccaaactttgtatttttttgagtTAGGGTCTAGTTTTCTGGTCAACTA
TTTTTTAATATACGATGAGGCTTTGTGGGTagcattttttgatttctttt
gcaaattaaCTGATCGTATTTTGGTTTTGTAAAAAGATGTAAATTAACCT
TTTAGATGACGTTCTGTTCAATTGAAAGGTAAATTTTTACTTGAATAATA
TGaataaacattaaaataattttttttgtttttcatgaaatatattttat
caacgaACTTTTTTCCTGCCTAATTGTACATAAAGAAAAATTACTCTCAC
TGCACtttgtctttttttaaagaagtgtGTGAACCCACATTAAAATA
Run BLAST on NCBI

protein sequence of TCONS_00052450-protein

>TCONS_00052450-protein ID=TCONS_00052450-protein|Name=TCONS_00052450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MAGELDRQYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIEDSYRKQCV
IDDRVAHLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDKSSFDEIPR
FHTQILRVKDKDEFPMILVGNKSDLENERTVSTAEAQELGRKLKISYLES
SAKQRINVDAAFHDLVRSIRRSNEVIESPVKGKKKKKCIIL
Run BLAST on NCBI

transcript from alignment at scaffold_214:129661..132347+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052450 ID=TCONS_00052450|Name=TCONS_00052450|organism=Clytia hemisphaerica|type=transcript|length=2687bp|location=Sequence derived from alignment at scaffold_214:129661..132347+ (Clytia hemisphaerica)
ttttttttgaacgtTTAACTTTCATATCATTTTAGTGAATTAAAATAGGA ATTCatataaagttataaaaaatGGCAGGTGAACTTGATCGACAGTATAA ACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTGACCATTC AATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTATAGAAGAT TCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATTTAGATAG TAAGTATAATGTTCTGAAAATCATTTCTCTTGTTTATAATAAATGTACCT GTTAAACTTATTTCAAGGCTTAGTTCTTAATTGCTTTACATTTTCTTCAG GTTAGAGAAAATGAAagtactttttgttttctttataataatgtttcttg ttttattttctttcagtTCTCGATACAGCTGGACAAGAGGTAAAACTTCT TGCTTTTTTCAATCGTTGTATGTTTTACATTGCCGTTTATCTAACAGAAT AATGATGTCCGATATATATTGTTCTGATTACAAAAGATTGTGTAAACCTT ATGTCCTACTTTAATACGAAATACTACGGATCACatttactttttcattt tacCAACAAGTTTTTATAGTGGAGACACACTTCTCTCATATCTCTGCATC ACAGATTTATTTTAATTCATCTTTAATTATGGATGTCTGTTTTATCACGA AAATCTTCCAAAGTCTGTTTTAATAAGGCACTTACGACTTTAATCTTCTT AATTCTGATGTATTTCTTCTTCGAATAGGAATTCAGTGCTATGAGAGAAC AATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGAC AAATCAAGGTATATTTATGACATGTTTTGCTAACTATCCCTAAAAAATGA ACTCgacatcaaaacatttttttgccaaattctatgcattcaaaaatttc aaccaaatccagAACCTTTTTAACAAGTTTTTGCTTAGAATAGAACTTGT TATTTATAACATCTATGTCTTTTCCTTTCAGTTTCGACGAAATACCAAGG TTTCACACACAAATTCTTCGTGTAAAAGACAAGTGAGTGGCTATAATATA TTTTAGTGATCTTCTTTTTCAACGATTTTAAATTCTGTGATTATTAGCAT TGTAATTTTAAGGATCACATATAAAGTATCAAACTTCTAAAGAAGCACGC TTACCGTTTTCTGTCACAACCAAAACCATCACCACTTGATGATAGTGCTA TAGAAATTCCACTTCACAAAAGAGAAGGAAACCTCTATCGAACCCACACC CTTCTGTGTTACAATAACCGAAATAACAtgcctttttttcttgtgttgga cggtgaaaaagaatgcggctattatattttgatttttcccgacatgtttc ggactcggtccgttctcaagggaatgatCAAATgccttttttctttaatt tcagaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGATTTGGAA AATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACGAAAATT AAAAGTAAGACATTTTGTTTTTTGAGAAAACACTTGTAACTTGATTTAAG CTCTTTTCGCATACTTTGCGGTCATCTCTTTATGATTTTATGTACTCAGA AGTTAAAGTGAATCTGTCGCATTTCTTAAGTAACCATTTTGTAAATACCC TTCCTTGCCTCTAAATTccaatttgtttttattttcttttaagatTTCTT ATTTGGAGTCTAGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCAC GATTTGGTTCGATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGt caaaggaaagaaaaagaagaagtgtATTATTTTGTAAATTGGAAAAAGGA AGGAAGAAACATTATTACCAGCCaaattctttttcacaaaaaaaattatc cacgTTGTAATAGTcatcatcaaatttttcaatcaatctaCTGCAAGGAT CAGGGATCCTCGTTTCTATAATCTATACAGGCTAAAGCAAAAGAACCGAC CCAATATAACATGTGCTGTCAGtgatgtttttttaaaaaacgaaGTGAAT CAAAGTTGATGAACTCTATCGACTGGATTTTAAAGCCAGATACTGGACAA TGTGTAAACATAAACAATATATGAAAGTACATAGAGAGAAAAactaatta ttattattataactattattattcaatttcattttacaattttttgattt ttttgtgcctttttttagttctttttttttcaatttattatgTTGAACCA TACAAATCAATTATCCTTTTACCGcatgaataaaaaatttacccaaactt tgtatttttttgagtTAGGGTCTAGTTTTCTGGTCAACTATTTTTTAATA TACGATGAGGCTTTGTGGGTagcattttttgatttcttttgcaaattaaC TGATCGTATTTTGGTTTTGTAAAAAGATGTAAATTAACCTTTTAGATGAC GTTCTGTTCAATTGAAAGGTAAATTTTTACTTGAATAATATGaataaaca ttaaaataattttttttgtttttcatgaaatatattttatcaacgaACTT TTTTCCTGCCTAATTGTACATAAAGAAAAATTACTCTCACTGCACtttgt ctttttttaaagaagtgtGTGAACCCACATTAAAATA

Coding sequence (CDS) from alignment at scaffold_214:129661..132347+

>TCONS_00052450 ID=TCONS_00052450|Name=TCONS_00052450|organism=Clytia hemisphaerica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_214:129661..132347+ (Clytia hemisphaerica)
atGGCAGGTGAACTTGATCGACAGTATAAACTTGTAGTCGTCGGCGGTGG
TGGTGTCGGTAAAAGTGCCTTGACCATTCAATTCATCCAGTCTCATTTTG
TACAAGATTACGATCCGACTATAGAAGATTCATATAGGAAACAATGTGTC
ATCGATGATCGTGTAGCACATTTAGATAtTCTCGATACAGCTGGACAAGA
GGAATTCAGTGCTATGAGAGAACAATATATGAGAACTGGTGAAGGATTCT
TATTAGTATTCTCAGTGACAGACAAATCAAGTTTCGACGAAATACCAAGG
TTTCACACACAAATTCTTCGTGTAAAAGACAAaGATGAATTTCCCATGAT
TTTAGTCGGTAACAAATCTGATTTGGAAAATGAAAGGACGGTATCAACTG
CAGAAGCACAAGAATTAGGACGAAAATTAAAAatTTCTTATTTGGAGTCT
AGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCACGATTTGGTTCG
ATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGtcaaaggaaaga
aaaagaagaagtgtATTATTTTGTAAatGGCAGGTGAACTTGATCGACAG
TATAAACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTGAC
CATTCAATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTATAG
AAGATTCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATTTA
GATAtTCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAGAACA
ATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGACA
AATCAAGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCGTGTA
AAAGACAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGATTT
GGAAAATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACGAA
AATTAAAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAACGTC
GACGCAGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACGAAGT
CATCGAATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATTTTGT
AAatGGCAGGTGAACTTGATCGACAGTATAAACTTGTAGTCGTCGGCGGT
GGTGGTGTCGGTAAAAGTGCCTTGACCATTCAATTCATCCAGTCTCATTT
TGTACAAGATTACGATCCGACTATAGAAGATTCATATAGGAAACAATGTG
TCATCGATGATCGTGTAGCACATTTAGATAtTCTCGATACAGCTGGACAA
GAGGAATTCAGTGCTATGAGAGAACAATATATGAGAACTGGTGAAGGATT
CTTATTAGTATTCTCAGTGACAGACAAATCAAGTTTCGACGAAATACCAA
GGTTTCACACACAAATTCTTCGTGTAAAAGACAAaGATGAATTTCCCATG
ATTTTAGTCGGTAACAAATCTGATTTGGAAAATGAAAGGACGGTATCAAC
TGCAGAAGCACAAGAATTAGGACGAAAATTAAAAatTTCTTATTTGGAGT
CTAGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCACGATTTGGTT
CGATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGtcaaaggaaa
gaaaaagaagaagtgtATTATTTTGTAAatGGCAGGTGAACTTGATCGAC
AGTATAAACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTG
ACCATTCAATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTAT
AGAAGATTCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATT
TAGATAtTCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAGAA
CAATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGA
CAAATCAAGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCGTG
TAAAAGACAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGAT
TTGGAAAATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACG
AAAATTAAAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAACG
TCGACGCAGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACGAA
GTCATCGAATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATTTT
GTAAatGGCAGGTGAACTTGATCGACAGTATAAACTTGTAGTCGTCGGCG
GTGGTGGTGTCGGTAAAAGTGCCTTGACCATTCAATTCATCCAGTCTCAT
TTTGTACAAGATTACGATCCGACTATAGAAGATTCATATAGGAAACAATG
TGTCATCGATGATCGTGTAGCACATTTAGATAtTCTCGATACAGCTGGAC
AAGAGGAATTCAGTGCTATGAGAGAACAATATATGAGAACTGGTGAAGGA
TTCTTATTAGTATTCTCAGTGACAGACAAATCAAGTTTCGACGAAATACC
AAGGTTTCACACACAAATTCTTCGTGTAAAAGACAAaGATGAATTTCCCA
TGATTTTAGTCGGTAACAAATCTGATTTGGAAAATGAAAGGACGGTATCA
ACTGCAGAAGCACAAGAATTAGGACGAAAATTAAAAatTTCTTATTTGGA
GTCTAGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCACGATTTGG
TTCGATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGtcaaagga
aagaaaaagaagaagtgtATTATTTTGTAAatGGCAGGTGAACTTGATCG
ACAGTATAAACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCT
TGACCATTCAATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACT
ATAGAAGATTCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACA
TTTAGATAtTCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAG
AACAATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACA
GACAAATCAAGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCG
TGTAAAAGACAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTG
ATTTGGAAAATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGA
CGAAAATTAAAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAA
CGTCGACGCAGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACG
AAGTCATCGAATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATT
TTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033169XLOC_033169Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052450-proteinTCONS_00052450-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052450-exon-scaffold_214-1491911889:129661..129909TCONS_00052450-exon-scaffold_214-1491911889:129661..129909Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1510915933:129661..129909TCONS_00052450-exon-scaffold_214-1510915933:129661..129909Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1575043694:129661..129909TCONS_00052450-exon-scaffold_214-1575043694:129661..129909Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1491911889:130077..130099TCONS_00052450-exon-scaffold_214-1491911889:130077..130099Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1510915933:130077..130099TCONS_00052450-exon-scaffold_214-1510915933:130077..130099Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1575043694:130077..130099TCONS_00052450-exon-scaffold_214-1575043694:130077..130099Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1491911889:130439..130518TCONS_00052450-exon-scaffold_214-1491911889:130439..130518Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1510915933:130439..130518TCONS_00052450-exon-scaffold_214-1510915933:130439..130518Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1575043694:130439..130518TCONS_00052450-exon-scaffold_214-1575043694:130439..130518Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1491911889:130692..130742TCONS_00052450-exon-scaffold_214-1491911889:130692..130742Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1510915933:130692..130742TCONS_00052450-exon-scaffold_214-1510915933:130692..130742Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1575043694:130692..130742TCONS_00052450-exon-scaffold_214-1575043694:130692..130742Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1491911889:131115..131214TCONS_00052450-exon-scaffold_214-1491911889:131115..131214Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1510915933:131115..131214TCONS_00052450-exon-scaffold_214-1510915933:131115..131214Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1575043694:131115..131214TCONS_00052450-exon-scaffold_214-1575043694:131115..131214Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1491911889:131404..132347TCONS_00052450-exon-scaffold_214-1491911889:131404..132347Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1510915933:131404..132347TCONS_00052450-exon-scaffold_214-1510915933:131404..132347Clytia hemisphaericaexon
TCONS_00052450-exon-scaffold_214-1575043694:131404..132347TCONS_00052450-exon-scaffold_214-1575043694:131404..132347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_214supercontigscaffold_214:129661..132347 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
205.53 213.139 341.021 370.523 182.061 134.919 248.067 253.45 223.161 209.716 258.022 215.629 312.378 330.286 234.52 221.291 246.667 300.542 317.885 257.667 346.233 337.45 188.44 197.906 178.793 209.573 276.754 245.79 213.555 221.467
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
BLAST of TCONS_00052450 vs. Swiss-Prot (Human)
Match: RRAS2 (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 3.501e-78
Identity = 127/172 (73.84%), Postives = 149/172 (86.63%), Query Frame = 3
Query:   78 GELDRQYKLXXXXXXXXXKSALTIQFIQSHFVQDYDPTIEDSYRKQCVIDDRVAHLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDKSSFDEIPRFHTQILRVKDKDEFPMILVGNKSDLENERTVSTAEAQELGRKLKISYLESSAKQRINVDAAFHDLVRSIRRSNE 593
            G    +Y+LVVVGGGGVGKSALTIQFIQS+FV DYDPTIEDSY KQCVIDDR A LDILDTAGQEEF AMREQYMRTGEGFLLVFSVTD+ SF+EI +F  QILRVKD+DEFPMIL+GNK+DL+++R V+  E Q+L R+LK++Y+E+SAK R+NVD AFH+LVR IR+  E
Sbjct:    9 GSGQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 180          
The following BLAST results are available for this feature:
BLAST of TCONS_00052450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRAS23.501e-7873.84Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
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