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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052450 ID=TCONS_00052450|Name=TCONS_00052450|organism=Clytia hemisphaerica|type=transcript|length=1447bp ttttttttgaacgtTTAACTTTCATATCATTTTAGTGAATTAAAATAGGA ATTCatataaagttataaaaaatGGCAGGTGAACTTGATCGACAGTATAA ACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTGACCATTC AATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTATAGAAGAT TCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATTTAGATAt TCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAGAACAATATA TGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGACAAATCA AGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCGTGTAAAAGA CAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGATTTGGAAA ATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACGAAAATTA AAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAACGTCGACGC AGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACGAAGTCATCG AATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATTTTGTAAATT GGAAAAAGGAAGGAAGAAACATTATTACCAGCCaaattctttttcacaaa aaaaattatccacgTTGTAATAGTcatcatcaaatttttcaatcaatcta CTGCAAGGATCAGGGATCCTCGTTTCTATAATCTATACAGGCTAAAGCAA AAGAACCGACCCAATATAACATGTGCTGTCAGtgatgtttttttaaaaaa cgaaGTGAATCAAAGTTGATGAACTCTATCGACTGGATTTTAAAGCCAGA TACTGGACAATGTGTAAACATAAACAATATATGAAAGTACATAGAGAGAA AAactaattattattattataactattattattcaatttcattttacaat tttttgatttttttgtgcctttttttagttctttttttttcaatttatta tgTTGAACCATACAAATCAATTATCCTTTTACCGcatgaataaaaaattt acccaaactttgtatttttttgagtTAGGGTCTAGTTTTCTGGTCAACTA TTTTTTAATATACGATGAGGCTTTGTGGGTagcattttttgatttctttt gcaaattaaCTGATCGTATTTTGGTTTTGTAAAAAGATGTAAATTAACCT TTTAGATGACGTTCTGTTCAATTGAAAGGTAAATTTTTACTTGAATAATA TGaataaacattaaaataattttttttgtttttcatgaaatatattttat caacgaACTTTTTTCCTGCCTAATTGTACATAAAGAAAAATTACTCTCAC TGCACtttgtctttttttaaagaagtgtGTGAACCCACATTAAAATA Run BLAST on NCBI protein sequence of TCONS_00052450-protein >TCONS_00052450-protein ID=TCONS_00052450-protein|Name=TCONS_00052450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MAGELDRQYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIEDSYRKQCV IDDRVAHLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDKSSFDEIPR FHTQILRVKDKDEFPMILVGNKSDLENERTVSTAEAQELGRKLKISYLES SAKQRINVDAAFHDLVRSIRRSNEVIESPVKGKKKKKCIIL Run BLAST on NCBI transcript from alignment at scaffold_214:129661..132347+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052450 ID=TCONS_00052450|Name=TCONS_00052450|organism=Clytia hemisphaerica|type=transcript|length=2687bp|location=Sequence derived from alignment at scaffold_214:129661..132347+ (Clytia hemisphaerica) ttttttttgaacgtTTAACTTTCATATCATTTTAGTGAATTAAAATAGGA
ATTCatataaagttataaaaaatGGCAGGTGAACTTGATCGACAGTATAA
ACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTGACCATTC
AATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTATAGAAGAT
TCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATTTAGATAG
TAAGTATAATGTTCTGAAAATCATTTCTCTTGTTTATAATAAATGTACCT
GTTAAACTTATTTCAAGGCTTAGTTCTTAATTGCTTTACATTTTCTTCAG
GTTAGAGAAAATGAAagtactttttgttttctttataataatgtttcttg
ttttattttctttcagtTCTCGATACAGCTGGACAAGAGGTAAAACTTCT
TGCTTTTTTCAATCGTTGTATGTTTTACATTGCCGTTTATCTAACAGAAT
AATGATGTCCGATATATATTGTTCTGATTACAAAAGATTGTGTAAACCTT
ATGTCCTACTTTAATACGAAATACTACGGATCACatttactttttcattt
tacCAACAAGTTTTTATAGTGGAGACACACTTCTCTCATATCTCTGCATC
ACAGATTTATTTTAATTCATCTTTAATTATGGATGTCTGTTTTATCACGA
AAATCTTCCAAAGTCTGTTTTAATAAGGCACTTACGACTTTAATCTTCTT
AATTCTGATGTATTTCTTCTTCGAATAGGAATTCAGTGCTATGAGAGAAC
AATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGAC
AAATCAAGGTATATTTATGACATGTTTTGCTAACTATCCCTAAAAAATGA
ACTCgacatcaaaacatttttttgccaaattctatgcattcaaaaatttc
aaccaaatccagAACCTTTTTAACAAGTTTTTGCTTAGAATAGAACTTGT
TATTTATAACATCTATGTCTTTTCCTTTCAGTTTCGACGAAATACCAAGG
TTTCACACACAAATTCTTCGTGTAAAAGACAAGTGAGTGGCTATAATATA
TTTTAGTGATCTTCTTTTTCAACGATTTTAAATTCTGTGATTATTAGCAT
TGTAATTTTAAGGATCACATATAAAGTATCAAACTTCTAAAGAAGCACGC
TTACCGTTTTCTGTCACAACCAAAACCATCACCACTTGATGATAGTGCTA
TAGAAATTCCACTTCACAAAAGAGAAGGAAACCTCTATCGAACCCACACC
CTTCTGTGTTACAATAACCGAAATAACAtgcctttttttcttgtgttgga
cggtgaaaaagaatgcggctattatattttgatttttcccgacatgtttc
ggactcggtccgttctcaagggaatgatCAAATgccttttttctttaatt
tcagaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGATTTGGAA
AATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACGAAAATT
AAAAGTAAGACATTTTGTTTTTTGAGAAAACACTTGTAACTTGATTTAAG
CTCTTTTCGCATACTTTGCGGTCATCTCTTTATGATTTTATGTACTCAGA
AGTTAAAGTGAATCTGTCGCATTTCTTAAGTAACCATTTTGTAAATACCC
TTCCTTGCCTCTAAATTccaatttgtttttattttcttttaagatTTCTT
ATTTGGAGTCTAGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCAC
GATTTGGTTCGATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGt
caaaggaaagaaaaagaagaagtgtATTATTTTGTAAATTGGAAAAAGGA
AGGAAGAAACATTATTACCAGCCaaattctttttcacaaaaaaaattatc
cacgTTGTAATAGTcatcatcaaatttttcaatcaatctaCTGCAAGGAT
CAGGGATCCTCGTTTCTATAATCTATACAGGCTAAAGCAAAAGAACCGAC
CCAATATAACATGTGCTGTCAGtgatgtttttttaaaaaacgaaGTGAAT
CAAAGTTGATGAACTCTATCGACTGGATTTTAAAGCCAGATACTGGACAA
TGTGTAAACATAAACAATATATGAAAGTACATAGAGAGAAAAactaatta
ttattattataactattattattcaatttcattttacaattttttgattt
ttttgtgcctttttttagttctttttttttcaatttattatgTTGAACCA
TACAAATCAATTATCCTTTTACCGcatgaataaaaaatttacccaaactt
tgtatttttttgagtTAGGGTCTAGTTTTCTGGTCAACTATTTTTTAATA
TACGATGAGGCTTTGTGGGTagcattttttgatttcttttgcaaattaaC
TGATCGTATTTTGGTTTTGTAAAAAGATGTAAATTAACCTTTTAGATGAC
GTTCTGTTCAATTGAAAGGTAAATTTTTACTTGAATAATATGaataaaca
ttaaaataattttttttgtttttcatgaaatatattttatcaacgaACTT
TTTTCCTGCCTAATTGTACATAAAGAAAAATTACTCTCACTGCACtttgt
ctttttttaaagaagtgtGTGAACCCACATTAAAATA Coding sequence (CDS) from alignment at scaffold_214:129661..132347+ >TCONS_00052450 ID=TCONS_00052450|Name=TCONS_00052450|organism=Clytia hemisphaerica|type=CDS|length=3456bp|location=Sequence derived from alignment at scaffold_214:129661..132347+ (Clytia hemisphaerica) atGGCAGGTGAACTTGATCGACAGTATAAACTTGTAGTCGTCGGCGGTGG TGGTGTCGGTAAAAGTGCCTTGACCATTCAATTCATCCAGTCTCATTTTG TACAAGATTACGATCCGACTATAGAAGATTCATATAGGAAACAATGTGTC ATCGATGATCGTGTAGCACATTTAGATAtTCTCGATACAGCTGGACAAGA GGAATTCAGTGCTATGAGAGAACAATATATGAGAACTGGTGAAGGATTCT TATTAGTATTCTCAGTGACAGACAAATCAAGTTTCGACGAAATACCAAGG TTTCACACACAAATTCTTCGTGTAAAAGACAAaGATGAATTTCCCATGAT TTTAGTCGGTAACAAATCTGATTTGGAAAATGAAAGGACGGTATCAACTG CAGAAGCACAAGAATTAGGACGAAAATTAAAAatTTCTTATTTGGAGTCT AGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCACGATTTGGTTCG ATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGtcaaaggaaaga aaaagaagaagtgtATTATTTTGTAAatGGCAGGTGAACTTGATCGACAG TATAAACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTGAC CATTCAATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTATAG AAGATTCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATTTA GATAtTCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAGAACA ATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGACA AATCAAGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCGTGTA AAAGACAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGATTT GGAAAATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACGAA AATTAAAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAACGTC GACGCAGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACGAAGT CATCGAATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATTTTGT AAatGGCAGGTGAACTTGATCGACAGTATAAACTTGTAGTCGTCGGCGGT GGTGGTGTCGGTAAAAGTGCCTTGACCATTCAATTCATCCAGTCTCATTT TGTACAAGATTACGATCCGACTATAGAAGATTCATATAGGAAACAATGTG TCATCGATGATCGTGTAGCACATTTAGATAtTCTCGATACAGCTGGACAA GAGGAATTCAGTGCTATGAGAGAACAATATATGAGAACTGGTGAAGGATT CTTATTAGTATTCTCAGTGACAGACAAATCAAGTTTCGACGAAATACCAA GGTTTCACACACAAATTCTTCGTGTAAAAGACAAaGATGAATTTCCCATG ATTTTAGTCGGTAACAAATCTGATTTGGAAAATGAAAGGACGGTATCAAC TGCAGAAGCACAAGAATTAGGACGAAAATTAAAAatTTCTTATTTGGAGT CTAGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCACGATTTGGTT CGATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGtcaaaggaaa gaaaaagaagaagtgtATTATTTTGTAAatGGCAGGTGAACTTGATCGAC AGTATAAACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCTTG ACCATTCAATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACTAT AGAAGATTCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACATT TAGATAtTCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAGAA CAATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACAGA CAAATCAAGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCGTG TAAAAGACAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTGAT TTGGAAAATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGACG AAAATTAAAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAACG TCGACGCAGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACGAA GTCATCGAATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATTTT GTAAatGGCAGGTGAACTTGATCGACAGTATAAACTTGTAGTCGTCGGCG GTGGTGGTGTCGGTAAAAGTGCCTTGACCATTCAATTCATCCAGTCTCAT TTTGTACAAGATTACGATCCGACTATAGAAGATTCATATAGGAAACAATG TGTCATCGATGATCGTGTAGCACATTTAGATAtTCTCGATACAGCTGGAC AAGAGGAATTCAGTGCTATGAGAGAACAATATATGAGAACTGGTGAAGGA TTCTTATTAGTATTCTCAGTGACAGACAAATCAAGTTTCGACGAAATACC AAGGTTTCACACACAAATTCTTCGTGTAAAAGACAAaGATGAATTTCCCA TGATTTTAGTCGGTAACAAATCTGATTTGGAAAATGAAAGGACGGTATCA ACTGCAGAAGCACAAGAATTAGGACGAAAATTAAAAatTTCTTATTTGGA GTCTAGCGCAAAACAACGAATTAACGTCGACGCAGCTTTCCACGATTTGG TTCGATCGATTAGAAGGTCTAACGAAGTCATCGAATCCCCTGtcaaagga aagaaaaagaagaagtgtATTATTTTGTAAatGGCAGGTGAACTTGATCG ACAGTATAAACTTGTAGTCGTCGGCGGTGGTGGTGTCGGTAAAAGTGCCT TGACCATTCAATTCATCCAGTCTCATTTTGTACAAGATTACGATCCGACT ATAGAAGATTCATATAGGAAACAATGTGTCATCGATGATCGTGTAGCACA TTTAGATAtTCTCGATACAGCTGGACAAGAGGAATTCAGTGCTATGAGAG AACAATATATGAGAACTGGTGAAGGATTCTTATTAGTATTCTCAGTGACA GACAAATCAAGTTTCGACGAAATACCAAGGTTTCACACACAAATTCTTCG TGTAAAAGACAAaGATGAATTTCCCATGATTTTAGTCGGTAACAAATCTG ATTTGGAAAATGAAAGGACGGTATCAACTGCAGAAGCACAAGAATTAGGA CGAAAATTAAAAatTTCTTATTTGGAGTCTAGCGCAAAACAACGAATTAA CGTCGACGCAGCTTTCCACGATTTGGTTCGATCGATTAGAAGGTCTAACG AAGTCATCGAATCCCCTGtcaaaggaaagaaaaagaagaagtgtATTATT TTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052450-exon-scaffold_214-1491911889:129661..129909 | TCONS_00052450-exon-scaffold_214-1491911889:129661..129909 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1510915933:129661..129909 | TCONS_00052450-exon-scaffold_214-1510915933:129661..129909 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1575043694:129661..129909 | TCONS_00052450-exon-scaffold_214-1575043694:129661..129909 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1491911889:130077..130099 | TCONS_00052450-exon-scaffold_214-1491911889:130077..130099 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1510915933:130077..130099 | TCONS_00052450-exon-scaffold_214-1510915933:130077..130099 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1575043694:130077..130099 | TCONS_00052450-exon-scaffold_214-1575043694:130077..130099 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1491911889:130439..130518 | TCONS_00052450-exon-scaffold_214-1491911889:130439..130518 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1510915933:130439..130518 | TCONS_00052450-exon-scaffold_214-1510915933:130439..130518 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1575043694:130439..130518 | TCONS_00052450-exon-scaffold_214-1575043694:130439..130518 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1491911889:130692..130742 | TCONS_00052450-exon-scaffold_214-1491911889:130692..130742 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1510915933:130692..130742 | TCONS_00052450-exon-scaffold_214-1510915933:130692..130742 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1575043694:130692..130742 | TCONS_00052450-exon-scaffold_214-1575043694:130692..130742 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1491911889:131115..131214 | TCONS_00052450-exon-scaffold_214-1491911889:131115..131214 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1510915933:131115..131214 | TCONS_00052450-exon-scaffold_214-1510915933:131115..131214 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1575043694:131115..131214 | TCONS_00052450-exon-scaffold_214-1575043694:131115..131214 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1491911889:131404..132347 | TCONS_00052450-exon-scaffold_214-1491911889:131404..132347 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1510915933:131404..132347 | TCONS_00052450-exon-scaffold_214-1510915933:131404..132347 | Clytia hemisphaerica | exon |
TCONS_00052450-exon-scaffold_214-1575043694:131404..132347 | TCONS_00052450-exon-scaffold_214-1575043694:131404..132347 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_214 | supercontig | scaffold_214:129661..132347 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005525 | GTP binding |
GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007165 |
signal transduction |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0003924 |
GTPase activity |
molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00052450 vs. Swiss-Prot (Human)
Match: RRAS2 (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 3.501e-78 Identity = 127/172 (73.84%), Postives = 149/172 (86.63%), Query Frame = 3
Query: 78 GELDRQYKLXXXXXXXXXKSALTIQFIQSHFVQDYDPTIEDSYRKQCVIDDRVAHLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDKSSFDEIPRFHTQILRVKDKDEFPMILVGNKSDLENERTVSTAEAQELGRKLKISYLESSAKQRINVDAAFHDLVRSIRRSNE 593
G +Y+LVVVGGGGVGKSALTIQFIQS+FV DYDPTIEDSY KQCVIDDR A LDILDTAGQEEF AMREQYMRTGEGFLLVFSVTD+ SF+EI +F QILRVKD+DEFPMIL+GNK+DL+++R V+ E Q+L R+LK++Y+E+SAK R+NVD AFH+LVR IR+ E
Sbjct: 9 GSGQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQE 180
The following BLAST results are available for this feature:
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