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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052395 ID=TCONS_00052395|Name=TCONS_00052395|organism=Clytia hemisphaerica|type=transcript|length=3869bpRun BLAST on NCBI protein sequence of TCONS_00052395-protein >TCONS_00052395-protein ID=TCONS_00052395-protein|Name=TCONS_00052395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp MASSQQSENNGVKYRPREEIVYQQFLQADLEVQTIDWKDDKVEDNEEVKCRun BLAST on NCBI transcript from alignment at scaffold_213:1288779..1301352- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052395 ID=TCONS_00052395|Name=TCONS_00052395|organism=Clytia hemisphaerica|type=transcript|length=12574bp|location=Sequence derived from alignment at scaffold_213:1288779..1301352- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:1288779..1301352- >TCONS_00052395 ID=TCONS_00052395|Name=TCONS_00052395|organism=Clytia hemisphaerica|type=CDS|length=21015bp|location=Sequence derived from alignment at scaffold_213:1288779..1301352- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052395 vs. Swiss-Prot (Human)
Match: SKP2 (S-phase kinase-associated protein 2 OS=Homo sapiens GN=SKP2 PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 7.645e-30 Identity = 97/322 (30.12%), Postives = 155/322 (48.14%), Query Frame = 3
Query: 567 SLFDELVLIIFKHFSRTTILNCMRVSKRWNRLGSDSSLWKSVNCDSKHFIMEGQLGKILHRGVESLRLSKAEVLANICIEDCALLKDEIECEFQLKQLDCSMSKFKDEALSTLILNCKQLENLSFESCKLNPTVLSXXXXXXXXXXXXXALCVGLNIGSLDMITRQCQQITSLNLSWT---NQTRDAIRTICRCRELRELNLSGLRGGVNRKYMELLVKNCNKLMQLDLSDVALQIGSLKLIADNLTSLTTLSISRCSDVRSEQLFDLKELRSLSHLNLFGFLNMSALELFSETRPDVHINKHTFSPIARPISSASYEGRLW 1523
SL DEL+L IF +L V KRW RL SD SLW++++ K+ + G++L +GV + R ++ + + E F+++ +D S S + L ++ C +L+NLS E +L+ +++ + N NL LNL+ C G + +L + C ++ LNLSW + + + +LNLSG R + + + LV+ C L+ LDLSD + L L LS+SRC D+ E L +L E+ +L L +FG + L+L E P + IN F+ IARP +W
Sbjct: 99 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLA---------EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIW 410 The following BLAST results are available for this feature:
BLAST of TCONS_00052395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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