TCONS_00052395-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052395-protein
Unique NameTCONS_00052395-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052395-protein ID=TCONS_00052395-protein|Name=TCONS_00052395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MASSQQSENNGVKYRPREEIVYQQFLQADLEVQTIDWKDDKVEDNEEVKC
TPDDSNEVCDSKRPRVPSASNSGSSSESCKSKKKKCKIVVEAYPTRTKCE
PQTYSTKSKSSEITTQYKRDVFGGGCSSLCLKDQTNHFASLFDELVLIIF
KHFSRTTILNCMRVSKRWNRLGSDSSLWKSVNCDSKHFIMEGQLGKILHR
GVESLRLSKAEVLANICIEDCALLKDEIECEFQLKQLDCSMSKFKDEALS
TLILNCKQLENLSFESCKLNPTVLSGVGLNRNLRVLNLALCVGLNIGSLD
MITRQCQQITSLNLSWTNQTRDAIRTICRCRELRELNLSGLRGGVNRKYM
ELLVKNCNKLMQLDLSDVALQIGSLKLIADNLTSLTTLSISRCSDVRSEQ
LFDLKELRSLSHLNLFGFLNMSALELFSETRPDVHINKHTFSPIARPISS
ASYEGRLWEQYVGFII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033122XLOC_033122Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052395TCONS_00052395Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 141..181
e-value: 2.8E-4
score: 30.2
IPR001810F-box domainPFAMPF00646F-boxcoord: 138..179
e-value: 4.7E-8
score: 32.6
IPR001810F-box domainPROSITEPS50181FBOXcoord: 135..181
score: 9.391
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 135..211
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 130..446
e-value: 3.0E-37
score: 127.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..79
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 213..429

Blast
[Close]
BLAST of TCONS_00052395-protein vs. Swiss-Prot (Human)
Match: SKP2 (S-phase kinase-associated protein 2 OS=Homo sapiens GN=SKP2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.531e-36
Identity = 97/324 (29.94%), Postives = 156/324 (48.15%), Query Frame = 0 
Query:  138 FASLFDELVLIIFKHFSRTTILNCMRVSKRWNRLGSDSSLWKSVNCDSKHFIMEGQLGKILHRGVESLRLSKAEVLANICIEDCALLKDEIECEFQLKQLDCSMSKFKDEALSTLILNCKQLENLSFESCKLNPTVLSGVGLNRNLRVLNLALCVGLNIGSLDMITRQCQQITSLNLSW---TNQTRDAIRTICRCRELRELNLSGLRGGVNRKYMELLVKNCNKLMQLDLSDVALQIGSLKLIADNLTSLTTLSISRCSDVRSEQLFDLKELRSLSHLNLFGFLNMSALELFSETRPDVHINKHTFSPIARPISSASYEGRLW 458
            + SL DEL+L IF       +L    V KRW RL SD SLW++++   K+ +     G++L +GV + R  ++ +   +          E    F+++ +D S S  +   L  ++  C +L+NLS E  +L+  +++ +  N NL  LNL+ C G +  +L  +   C ++  LNLSW     +    +        + +LNLSG R  + +  +  LV+ C  L+ LDLSD  +           L  L  LS+SRC D+  E L +L E+ +L  L +FG +    L+L  E  P + IN   F+ IARP         +W
Sbjct:   97 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKN-LHPDVTGRLLSQGVIAFRCPRSFMDQPLA---------EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIW 410
The following BLAST results are available for this feature:
BLAST of TCONS_00052395-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SKP24.531e-3629.94S-phase kinase-associated protein 2 OS=Homo sapien... [more]
back to top