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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052140 ID=TCONS_00052140|Name=TCONS_00052140|organism=Clytia hemisphaerica|type=transcript|length=1255bp
NNACTGCGTTAACCTTCTGTGTGCCAATTATCGACAAAAATTCACCTTTG
GCATATTCAATTGTACAAGAAGTTCACTGGAATCATCCTACAGCAATCCA
TTCTGGCATCGAAACCACTTGGCGCTATGTGCTTCAAACCTGCTACATAC
TTGAAGGAAGATCACTCGTAAAACAAGTTCGCTCCTCTTGTCCTCGATGT
CGTTATCTATTAAAAAGGAAATTCCAAGTCATAATGGGACCACTCTCAGA
AGACAACCTAAAGATTGCCCCTGCCTTCTTTGTCGCCCAGACTGATCTTG
CTGGACCATTTCAGTCCTATTCAGAACATCACAAGCGCACCACTGTGGCT
ACTCGTTTTCTGCTGCGCTACAACCACAGCTGTCAAAATCAAAGTCATGG
ACAGCTACAACACAACGTCATTTCTTCAAGCATTTACACGACTAGCCTGT
GAGGTTGGTTACCCGAAAAAGCTTGTCGTTGATGAAGGAAGTCAGCTCGT
AAAGGGTTGTGAAACAATGCAACTCAACTTTGTCGACCTACAACAACACC
TTCATTCAAAAATGAATATCGATTTTGAGACATGTCCTGTTGGTGGACAT
AATGTCAACGGACGTGTAGAAAGAAAGATTCAGGAGATAAAGAAGTCGAT
CGATAAAACTGCCGGAAATCAACGTTTGTCCATTCTTCATTGGGAGACAC
TGGCATCAACAATCTCGAATTCAATCAACAATTTGCCATTAGCCGTTGGC
AACTTCAAGGAGTTCGAGATGTCAGATCTGATCACCCCGAACCGCCTACT
CCTCGGCCGCAACAACGACCGCTCACCGTCAGAGCCCTTAACAGTCACAA
ATGACACCGACAAGATTCTACGAACCAACAAAAAGATCTTTGACTCGTGG
TTTGAATGTTGGCTCACTTCACACGTACCAGCATTAATGGATCAGCCAAA
GTGGTTCAAAAACGACAATGACATCAAGCCAGGAGACATCGTTCTTTTCA
CCAAGCAGGAGTCGAGCCTATCCGCAAACTATCAATTTGGAATCGTTAAG
AGCATCAATAAAGGACGTGACGGAAAGATTCGGGATGTTATTGTGCAGTA
TCAAAATTCAACCGAGAAAGTCAAACGTGAGACCCATCGATCAGTTCGCT
CGTTGGTTTTGATACGTGGTGTGGAAATAGAAATAGATTTGATGAAACAA
TTGgataactcaaaaaattaaaattttctaatatatcaaaaaaaaaaaaa
aaaaa Run BLAST on NCBI protein sequence of TCONS_00052140-protein >TCONS_00052140-protein ID=TCONS_00052140-protein|Name=TCONS_00052140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MDSYNTTSFLQAFTRLACEVGYPKKLVVDEGSQLVKGCETMQLNFVDLQQ
HLHSKMNIDFETCPVGGHNVNGRVERKIQEIKKSIDKTAGNQRLSILHWE
TLASTISNSINNLPLAVGNFKEFEMSDLITPNRLLLGRNNDRSPSEPLTV
TNDTDKILRTNKKIFDSWFECWLTSHVPALMDQPKWFKNDNDIKPGDIVL
FTKQESSLSANYQFGIVKSINKGRDGKIRDVIVQYQNSTEKVKRETHRSV
RSLVLIRGVEIEIDLMKQLDNSKN Run BLAST on NCBI transcript from alignment at scaffold_210:212341..213595 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052140 ID=TCONS_00052140|Name=TCONS_00052140|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_210:212341..213595 (Clytia hemisphaerica)
ttttttttttttttttttgatatattagaaaattttaattttttgagtta
tcCAATTGTTTCATCAAATCTATTTCTATTTCCACACCACGTATCAAAAC
CAACGAGCGAACTGATCGATGGGTCTCACGTTTGACTTTCTCGGTTGAAT
TTTGATACTGCACAATAACATCCCGAATCTTTCCGTCACGTCCTTTATTG
ATGCTCTTAACGATTCCAAATTGATAGTTTGCGGATAGGCTCGACTCCTG
CTTGGTGAAAAGAACGATGTCTCCTGGCTTGATGTCATTGTCGTTTTTGA
ACCACTTTGGCTGATCCATTAATGCTGGTACGTGTGAAGTGAGCCAACAT
TCAAACCACGAGTCAAAGATCTTTTTGTTGGTTCGTAGAATCTTGTCGGT
GTCATTTGTGACTGTTAAGGGCTCTGACGGTGAGCGGTCGTTGTTGCGGC
CGAGGAGTAGGCGGTTCGGGGTGATCAGATCTGACATCTCGAACTCCTTG
AAGTTGCCAACGGCTAATGGCAAATTGTTGATTGAATTCGAGATTGTTGA
TGCCAGTGTCTCCCAATGAAGAATGGACAAACGTTGATTTCCGGCAGTTT
TATCGATCGACTTCTTTATCTCCTGAATCTTTCTTTCTACACGTCCGTTG
ACATTATGTCCACCAACAGGACATGTCTCAAAATCGATATTCATTTTTGA
ATGAAGGTGTTGTTGTAGGTCGACAAAGTTGAGTTGCATTGTTTCACAAC
CCTTTACGAGCTGACTTCCTTCATCAACGACAAGCTTTTTCGGGTAACCA
ACCTCACAGGCTAGTCGTGTAAATGCTTGAAGAAATGACGTTGTGTTGTA
GCTGTCCATGACTTTGATTTTGACAGCTGTGGTTGTAGCGCAGCAGAAAA
CGAGTAGCCACAGTGGTGCGCTTGTGATGTTCTGAATAGGACTGAAATGG
TCCAGCAAGATCAGTCTGGGCGACAAAGAAGGCAGGGGCAATCTTTAGGT
TGTCTTCTGAGAGTGGTCCCATTATGACTTGGAATTTCCTTTTTAATAGA
TAACGACATCGAGGACAAGAGGAGCGAACTTGTTTTACGAGTGATCTTCC
TTCAAGTATGTAGCAGGTTTGAAGCACATAGCGCCAAGTGGTTTCGATGC
CAGAATGGATTGCTGTAGGATGATTCCAGTGAACTTCTTGTACAATTGAA
TATGCCAAAGGTGAATTTTTGTCGATAATTGGCACACAGAAGGTTAACGC
AGTNN Coding sequence (CDS) from alignment at scaffold_210:212341..213595 >TCONS_00052140 ID=TCONS_00052140|Name=TCONS_00052140|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_210:212341..213595 (Clytia hemisphaerica)
ttaattttttgagttatcCAATTGTTTCATCAAATCTATTTCTATTTCCA
CACCACGTATCAAAACCAACGAGCGAACTGATCGATGGGTCTCACGTTTG
ACTTTCTCGGTTGAATTTTGATACTGCACAATAACATCCCGAATCTTTCC
GTCACGTCCTTTATTGATGCTCTTAACGATTCCAAATTGATAGTTTGCGG
ATAGGCTCGACTCCTGCTTGGTGAAAAGAACGATGTCTCCTGGCTTGATG
TCATTGTCGTTTTTGAACCACTTTGGCTGATCCATTAATGCTGGTACGTG
TGAAGTGAGCCAACATTCAAACCACGAGTCAAAGATCTTTTTGTTGGTTC
GTAGAATCTTGTCGGTGTCATTTGTGACTGTTAAGGGCTCTGACGGTGAG
CGGTCGTTGTTGCGGCCGAGGAGTAGGCGGTTCGGGGTGATCAGATCTGA
CATCTCGAACTCCTTGAAGTTGCCAACGGCTAATGGCAAATTGTTGATTG
AATTCGAGATTGTTGATGCCAGTGTCTCCCAATGAAGAATGGACAAACGT
TGATTTCCGGCAGTTTTATCGATCGACTTCTTTATCTCCTGAATCTTTCT
TTCTACACGTCCGTTGACATTATGTCCACCAACAGGACATGTCTCAAAAT
CGATATTCATTTTTGAATGAAGGTGTTGTTGTAGGTCGACAAAGTTGAGT
TGCATTGTTTCACAACCCTTTACGAGCTGACTTCCTTCATCAACGACAAG
CTTTTTCGGGTAACCAACCTCACAGGCTAGTCGTGTAAATGCTTGAAGAA
ATGACGTTGTGTTGTAGCTGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052140-exon-scaffold_210-1491911889:212341..213595 | TCONS_00052140-exon-scaffold_210-1491911889:212341..213595 | Clytia hemisphaerica | exon |
| TCONS_00052140-exon-scaffold_210-1510915933:212341..213595 | TCONS_00052140-exon-scaffold_210-1510915933:212341..213595 | Clytia hemisphaerica | exon |
| TCONS_00052140-exon-scaffold_210-1575043694:212341..213595 | TCONS_00052140-exon-scaffold_210-1575043694:212341..213595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:212341..213595 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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