TCONS_00052140-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052140-protein
Unique NameTCONS_00052140-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052140-protein ID=TCONS_00052140-protein|Name=TCONS_00052140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MDSYNTTSFLQAFTRLACEVGYPKKLVVDEGSQLVKGCETMQLNFVDLQQ
HLHSKMNIDFETCPVGGHNVNGRVERKIQEIKKSIDKTAGNQRLSILHWE
TLASTISNSINNLPLAVGNFKEFEMSDLITPNRLLLGRNNDRSPSEPLTV
TNDTDKILRTNKKIFDSWFECWLTSHVPALMDQPKWFKNDNDIKPGDIVL
FTKQESSLSANYQFGIVKSINKGRDGKIRDVIVQYQNSTEKVKRETHRSV
RSLVLIRGVEIEIDLMKQLDNSKN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033020XLOC_033020Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052140TCONS_00052140Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..178
e-value: 5.3E-11
score: 41.9
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 2..116
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..139
score: 10.494

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052140-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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