TCONS_00051716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051716
Unique NameTCONS_00051716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051716 ID=TCONS_00051716|Name=TCONS_00051716|organism=Clytia hemisphaerica|type=transcript|length=717bp
TTTTGTTTGAGTGTGGTTTCTTTTTGTTCGTTTTATTTGTGTCGACTATG
AGAAAAGAAGGCTGGAAAAGAACATCAAAGTTTAAAGGGATAGATAGAAG
AACGGTATGCTATAGACGGGCTTTATCAAAGAAGGCTCTTTGATAATAAG
AATCAGAAGTACCAACAATAATTAAGACCAAATGAAAGAGTTGTcctaat
aaatattttttaaggctttacagatACAGATAGGTAAATCATTTTGCATC
AAGTGAAAAGATAATTGAGAGTGAGAGTGGATCAAACTAAAAACAACTGA
AGTTGATTTCTCAGTGGAGATTGAGCATAAAAATACAGTGTTTTTCGGgc
attagaaaatatttttttatctttcctTCACTTAATTTTTCCAATAAGTT
GTGTTGTGAAGAGGGAGATCAAAAAACCCCTAAAAGGAAGCAAGTAAGAG
TCCCAAAAAATATAGTTTGAAATGAGACAAGGATGTTTTGATGTACCTTA
GTGGTACCCTGaagtaaaaagttttaaattaagaTTATAGCCTGTATGGT
AGAGATAAAGAGAGGTAGTTAGAAAGTTGTGAAAAGCTTtaaaagatttg
agatcaaaaTCGAATTCAATTCAAACAtcataacacccctgtgtcacaga
cccgctgggacccagCACCACTGGAAAATCTGGCGGAAATTTCGTTCCCG
GTAGGagaataccctgg
Run BLAST on NCBI

transcript from alignment at scaffold_202:1222155..1222871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051716 ID=TCONS_00051716|Name=TCONS_00051716|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at scaffold_202:1222155..1222871 (Clytia hemisphaerica)
ccagggtattctCCTACCGGGAACGAAATTTCCGCCAGATTTTCCAGTGG
TGctgggtcccagcgggtctgtgacacaggggtgttatgaTGTTTGAATT
GAATTCGAttttgatctcaaatcttttaAAGCTTTTCACAACTTTCTAAC
TACCTCTCTTTATCTCTACCATACAGGCTATAAtcttaatttaaaacttt
ttacttCAGGGTACCACTAAGGTACATCAAAACATCCTTGTCTCATTTCA
AACTATATTTTTTGGGACTCTTACTTGCTTCCTTTTAGGGGTTTTTTGAT
CTCCCTCTTCACAACACAACTTATTGGAAAAATTAAGTGAaggaaagata
aaaaaatattttctaatgcCCGAAAAACACTGTATTTTTATGCTCAATCT
CCACTGAGAAATCAACTTCAGTTGTTTTTAGTTTGATCCACTCTCACTCT
CAATTATCTTTTCACTTGATGCAAAATGATTTACCTATCTGTatctgtaa
agccttaaaaaatatttattaggACAACTCTTTCATTTGGTCTTAATTAT
TGTTGGTACTTCTGATTCTTATTATCAAAGAGCCTTCTTTGATAAAGCCC
GTCTATAGCATACCGTTCTTCTATCTATCCCTTTAAACTTTGATGTTCTT
TTCCAGCCTTCTTTTCTCATAGTCGACACAAATAAAACGAACAAAAAGAA
ACCACACTCAAACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032747XLOC_032747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051716-exon-scaffold_202-1491911889:1222155..1222871TCONS_00051716-exon-scaffold_202-1491911889:1222155..1222871Clytia hemisphaericaexon
TCONS_00051716-exon-scaffold_202-1510915933:1222155..1222871TCONS_00051716-exon-scaffold_202-1510915933:1222155..1222871Clytia hemisphaericaexon
TCONS_00051716-exon-scaffold_202-1575043694:1222155..1222871TCONS_00051716-exon-scaffold_202-1575043694:1222155..1222871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1222155..1222871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0744227	0.179576	0.0840583	0.0588512	0.0728967	0	0.0465439	0.139341	0.192943	0.118969	0	0.104854	0.161209	0.0742394	0.0776862	0.135047	0.197613	0.16015	0	0.074982	0	0.287286	0.1022	0.0775148	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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