TCONS_00051716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051716
Unique NameTCONS_00051716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051716 ID=TCONS_00051716|Name=TCONS_00051716|organism=Clytia hemisphaerica|type=transcript|length=717bp
TTTTGTTTGAGTGTGGTTTCTTTTTGTTCGTTTTATTTGTGTCGACTATG
AGAAAAGAAGGCTGGAAAAGAACATCAAAGTTTAAAGGGATAGATAGAAG
AACGGTATGCTATAGACGGGCTTTATCAAAGAAGGCTCTTTGATAATAAG
AATCAGAAGTACCAACAATAATTAAGACCAAATGAAAGAGTTGTcctaat
aaatattttttaaggctttacagatACAGATAGGTAAATCATTTTGCATC
AAGTGAAAAGATAATTGAGAGTGAGAGTGGATCAAACTAAAAACAACTGA
AGTTGATTTCTCAGTGGAGATTGAGCATAAAAATACAGTGTTTTTCGGgc
attagaaaatatttttttatctttcctTCACTTAATTTTTCCAATAAGTT
GTGTTGTGAAGAGGGAGATCAAAAAACCCCTAAAAGGAAGCAAGTAAGAG
TCCCAAAAAATATAGTTTGAAATGAGACAAGGATGTTTTGATGTACCTTA
GTGGTACCCTGaagtaaaaagttttaaattaagaTTATAGCCTGTATGGT
AGAGATAAAGAGAGGTAGTTAGAAAGTTGTGAAAAGCTTtaaaagatttg
agatcaaaaTCGAATTCAATTCAAACAtcataacacccctgtgtcacaga
cccgctgggacccagCACCACTGGAAAATCTGGCGGAAATTTCGTTCCCG
GTAGGagaataccctgg
Run BLAST on NCBI

transcript from alignment at scaffold_202:1222155..1222871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051716 ID=TCONS_00051716|Name=TCONS_00051716|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at scaffold_202:1222155..1222871 (Clytia hemisphaerica)
ccagggtattctCCTACCGGGAACGAAATTTCCGCCAGATTTTCCAGTGG TGctgggtcccagcgggtctgtgacacaggggtgttatgaTGTTTGAATT GAATTCGAttttgatctcaaatcttttaAAGCTTTTCACAACTTTCTAAC TACCTCTCTTTATCTCTACCATACAGGCTATAAtcttaatttaaaacttt ttacttCAGGGTACCACTAAGGTACATCAAAACATCCTTGTCTCATTTCA AACTATATTTTTTGGGACTCTTACTTGCTTCCTTTTAGGGGTTTTTTGAT CTCCCTCTTCACAACACAACTTATTGGAAAAATTAAGTGAaggaaagata aaaaaatattttctaatgcCCGAAAAACACTGTATTTTTATGCTCAATCT CCACTGAGAAATCAACTTCAGTTGTTTTTAGTTTGATCCACTCTCACTCT CAATTATCTTTTCACTTGATGCAAAATGATTTACCTATCTGTatctgtaa agccttaaaaaatatttattaggACAACTCTTTCATTTGGTCTTAATTAT TGTTGGTACTTCTGATTCTTATTATCAAAGAGCCTTCTTTGATAAAGCCC GTCTATAGCATACCGTTCTTCTATCTATCCCTTTAAACTTTGATGTTCTT TTCCAGCCTTCTTTTCTCATAGTCGACACAAATAAAACGAACAAAAAGAA ACCACACTCAAACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032747XLOC_032747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051716-exon-scaffold_202-1491911889:1222155..1222871TCONS_00051716-exon-scaffold_202-1491911889:1222155..1222871Clytia hemisphaericaexon
TCONS_00051716-exon-scaffold_202-1510915933:1222155..1222871TCONS_00051716-exon-scaffold_202-1510915933:1222155..1222871Clytia hemisphaericaexon
TCONS_00051716-exon-scaffold_202-1575043694:1222155..1222871TCONS_00051716-exon-scaffold_202-1575043694:1222155..1222871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1222155..1222871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.0744227 0.179576 0.0840583 0.0588512 0.0728967 0 0.0465439 0.139341 0.192943 0.118969 0 0.104854 0.161209 0.0742394 0.0776862 0.135047 0.197613 0.16015 0 0.074982 0 0.287286 0.1022 0.0775148 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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