TCONS_00051668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051668
Unique NameTCONS_00051668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051668 ID=TCONS_00051668|Name=TCONS_00051668|organism=Clytia hemisphaerica|type=transcript|length=1351bp
NNCAAATTGTTGATGCCAACGAACAAGGTGCAGTCTTTTCAGTACTTGGT
TTCTTCCAAACCATCGTCAGTTTGGTAGCCTCGTTATCTTACAATGCAAT
CTACATTTACACGAATCAACATAACGAACCTGCTGCTGTGTTCATTATTG
CTAGTTTCACTACAATCATTCCTATCATTTTCTCAACatatttttactac
gtcgaaaaaaaaaatcgtaaCACTCAAAACGACGACGAAAACACAGAACA
ACCAACACCACCCacaaacaaaaattgcaatgacACAAAAGAAGATGACA
AAGGCGGAGAAGATTACGAAAGTATAGACAATGCtttcaatgaaaatgat
gaTAGAAATGGActagtgatttgattggtcaattACGAATAAAAATGACA
ATGCAGCAGCAATCTCACTTGGATTTCATTGCGAGATGCATCAAAATATA
ATCCGATTTTAGAGACAAACGGGATGTTTCTTCAATGAAAAGATTATTCT
ATAAGAGGTTTCAAAGTTATGAAATCGACTTTCAATCTCTAGTGAATAGT
ACCGAGTTTAAAATGGCACATTTATGGAAAACTCCACATCTATGATTTTA
AGTCTCATCTTTGCTCTTTGCCCGTCATTGCCAGTGGTAGGACTTGTTTA
GTAGTGATAAATTTTCGTAATTTACaccagaaaaaaatgtttaagaTTTG
CCACTATTGGCGAAAACCGGTttgtttccgtagaaaacattacgtaatga
atattGTGAATAACAAGGACACTACCCCGACAATACACTCTAACCTAATT
GTCTGTAATAACCACGTGGTTACGAACTTGCAACGGAGATTTTTGGCATC
ATTGAAACTTTCGCTGAATGCTGATGTCAAGCTAACATGATTGATAGGAT
AATATAAGACACACATTATTAATTTCTTAGGTTCACTGTGAAAAAGCTTC
AATCTaccaaaaactgaaaaattcacggtgttttttcttttcttctgtaA
TACTGAGCTGATTTTGGTTTATTTGTTGGACACAAAAAAAGTGCTTTAGG
CTATCTTCGAAATGTTTCTTTCCCTTTGACCCGGTAGGATTTATTCAGAC
AGTGGGAGGTAAAAATAGCGGAAACTCTATCAGGTTTCCATGTGTTTATA
ACCGGAGATTTGAGTTCCGTTGTTTCCAAGTCAGCAAACTTACAAtattg
gtcaaaatatattgagaattttggttaattcctcgtttttagcattTTAT
AGTTCGCCGGGTGAGAAAGTGGCTTTTGGGCTATTTGTTAAACTTGATCG
AATATTTCAGTTTGGGTGGGGTTTATACCTTTCCCACCTAGAGTTAGAGC
G
Run BLAST on NCBI

transcript from alignment at scaffold_202:1224613..1227471-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051668 ID=TCONS_00051668|Name=TCONS_00051668|organism=Clytia hemisphaerica|type=transcript|length=2859bp|location=Sequence derived from alignment at scaffold_202:1224613..1227471- (Clytia hemisphaerica)
NNCAAATTGTTGATGCCAACGAACAAGGTAAGGAGATACAATTGAAGAAA
GGATTTAGAAAAAAATTGTCACAATTACCTAAAATAGAATTCAACTCCAG
TGGCAGGCTTCAACAACCTTAGATGAGAATTGCATTCAGCAATTGTGACC
CAAGTCAATCTTTTTTACGCATACCCTAGCTTGGACCGTGGCCCTGGGGG
GGGGGCACTCATGGCGGTCTGACACTACAAGGGTCTTCTTTTAGTTGGAC
TGCTTTGACAATAAAAATCTGATGTATCTTTGTATTTGACTCACTTTGAT
TTCACAAACCAATTTTTGGCCGCACATGCCATCATTTAGAAATCGAGTGC
ACCACCCCTCCCCCTGGGACATTGGTGTCTCAACATTGGTTCACGTTATA
TCTTGGTAATCCTTTGACTTTTATTATTATTATTATTCCTTTTCTCCCAA
ACAGGTGCAGTCTTTTCAGTACTTGGTTTCTTCCAAACCATCGTCAGTTT
GGTAGCCTCGTTATCTTACAATGCAATCTACATTTACACGAATCAACATA
ACGAACCTGCTGCTGTGTTCATTATTGCTAGTTTCACTACAATCATTCCT
ATCATTTTCTCAACGTAAGTTTTCCACTTTGTAAGTAACTTTATTAGCTG
TATGCTTTGTGTAAGCCAAAATCAATAACAGTGCTCAATGTTAATGATAA
CAGAGCTTTATACCTCGGATATCATTAATAAAAACATTTTTGCATAATCG
TTTTTTTCAAATTTTGCTGACGTCAGCAGAAATCAGCAAAATACGAAAAT
TTGCAATAAAGTCCTGACATCAGCAAAATTTCAAAAAAATAATTTTTCAA
AATGAACCTTTTAATGATGTGCAACTTTGGTCCAAATTTCATGTTCATAT
CATTAGCCAAACTGGAGTTATTTAAAAAACAAGTTTTGCTGACGTCAGCA
ATTTTTGATTTTTGCGATTTTTCGCAAAATTGGCAAAACCTAAATTTAAG
TAACACCGATTTTCATGTTCTACATCGTAATGCACTTCTTTAAAGGTATA
ATTTATTATGCTAGGAGGGGTGGAATTGCCTCCGAAAAATTAACGAAAAT
TTGGACACGCATTAATTTACCCGAGACTAGTTTGAGTAAAGAAAACGATT
TAGTTTAATTTCATACTCACGGTTTCATGCCATCCAGGATGGCAATATTC
AGTGAAATAAACGTTTTATAAAAATTTACAATTTAATGTCTTCAAAAAAA
TTTTCTGACGTCAATTCAAAATAAGAATTATTCGAAAGTCTCGAAGAGAA
ATTTTAGTCTGTGGCGGCATTTGGCGATGATTTCAGTTCGCTTGTTTAAT
AAGTTCCGACCCGGATAGATAACAATCTCGAATTTCTCTGTATACGCTGT
ATTGAAAACACAAAATGAGTCTGCAAGCTTCAAACAGTGCTCAACTAACT
AGGAGCGGATATTCACTTTTTTCACAACTGATGATTGTAGAAATATAAAA
CTCAGAGTCTGTAGTGAAATACAGTGTGTTCGTGGAAATCTTCTATTTAT
AATTTAATTTTTCAATAGTTTTTACTAGTATAGTATTTTGTCAATGCTTG
CAAGTATCAACAAATATTATAGAACTATCCCTACTTCTAGACCAACCTTG
TGAAGATCTATGATTTGAAAAAAAATTTTGTCTTTCTTTTTTCAGATATT
TTTACTACGTCGAAAAAAAAAATCGTAACACTCAAAACGACGACGAAAAC
ACAGAACAACCAACACCACCCACAAACAAAAATTGCAATGACACAAAAGA
AGATGACAAAGGCGGAGAAGATTACGAAAGTATAGACAATGCTTTCAATG
AAAATGATGATAGAAATGGACTAGTGATTTGATTGGTCAATTACGAATAA
AAATGACAATGCAGCAGCAATCTCACTTGGATTTCATTGCGAGATGCATC
AAAATATAATCCGATTTTAGAGACAAACGGGATGTTTCTTCAATGAAAAG
ATTATTCTATAAGAGGTTTCAAAGTTATGAAATCGACTTTCAATCTCTAG
TGAATAGTACCGAGTTTAAAATGGCACATTTATGGAAAACTCCACATCTA
TGATTTTAAGTCTCATCTTTGCTCTTTGCCCGTCATTGCCAGTGGTAGGA
CTTGTTTAGTAGTGATAAATTTTCGTAATTTACACCAGAAAAAAATGTTT
AAGATTTGCCACTATTGGCGAAAACCGGTTTGTTTCCGTAGAAAACATTA
CGTAATGAATATTGTGAATAACAAGGACACTACCCCGACAATACACTCTA
ACCTAATTGTCTGTAATAACCACGTGGTTACGAACTTGCAACGGAGATTT
TTGGCATCATTGAAACTTTCGCTGAATGCTGATGTCAAGCTAACATGATT
GATAGGATAATATAAGACACACATTATTAATTTCTTAGGTTCACTGTGAA
AAAGCTTCAATCTACCAAAAACTGAAAAATTCACGGTGTTTTTTCTTTTC
TTCTGTAATACTGAGCTGATTTTGGTTTATTTGTTGGACACAAAAAAAGT
GCTTTAGGCTATCTTCGAAATGTTTCTTTCCCTTTGACCCGGTAGGATTT
ATTCAGACAGTGGGAGGTAAAAATAGCGGAAACTCTATCAGGTTTCCATG
TGTTTATAACCGGAGATTTGAGTTCCGTTGTTTCCAAGTCAGCAAACTTA
CAATATTGGTCAAAATATATTGAGAATTTTGGTTAATTCCTCGTTTTTAG
CATTTTATAGTTCGCCGGGTGAGAAAGTGGCTTTTGGGCTATTTGTTAAA
CTTGATCGAATATTTCAGTTTGGGTGGGGTTTATACCTTTCCCACCTAGA
GTTAGAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032703XLOC_032703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051668-exon-scaffold_202-1575043694:1227445..1227471TCONS_00051668-exon-scaffold_202-1575043694:1227445..1227471Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1575043694:1226858..1227017TCONS_00051668-exon-scaffold_202-1575043694:1226858..1227017Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1575043694:1224613..1225776TCONS_00051668-exon-scaffold_202-1575043694:1224613..1225776Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1510915933:1227445..1227471TCONS_00051668-exon-scaffold_202-1510915933:1227445..1227471Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1510915933:1226858..1227017TCONS_00051668-exon-scaffold_202-1510915933:1226858..1227017Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1510915933:1224613..1225776TCONS_00051668-exon-scaffold_202-1510915933:1224613..1225776Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1491911889:1227445..1227471TCONS_00051668-exon-scaffold_202-1491911889:1227445..1227471Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1491911889:1226858..1227017TCONS_00051668-exon-scaffold_202-1491911889:1226858..1227017Clytia hemisphaericaexon
TCONS_00051668-exon-scaffold_202-1491911889:1224613..1225776TCONS_00051668-exon-scaffold_202-1491911889:1224613..1225776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:1224613..1227471 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.223229	0.108222	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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