TCONS_00051517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051517
Unique NameTCONS_00051517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051517 ID=TCONS_00051517|Name=TCONS_00051517|organism=Clytia hemisphaerica|type=transcript|length=2189bp
TTTTagtcaattaaataaaaactaagAACTTCAAGATGCCTCGTTACGAT
GAAGGAAGATCTGAAGGAAGATCTGTTCTTCCAACCAAAAGCATGATGGG
TGGAAGACTTTACGTTGGCAAACTTCCCAGAGACATCAGAGAGCGTGATG
TAGAAAAAGAGTTTCGCAGATACGGACGTGTCAAGGATATTTCCATGAAA
GGAAACTACTGTTTTATcCAATACGAAAGCTCGAGGGATGCATCAGATGC
TGTCCACGATTTACACGGTCGCATGCTTTGGGGTGAAAGAATGTCAGTGG
AGCATGCACGAACACCGAAAGAGTTTGGATATAGAAGAGGTAGTGGTGGT
GGTGGAAGTCGATACCATGATAGAGGTTACAGAAGAGATTCATACAGAGA
CTCATACCACTCACGTAGAAGATCGCCTTTGCGCAGTGACTATCGAATTC
TGGTCAAGAACCTATCAACTAGATGTGATTTCCATGACTTGAAAGAAGTC
TTTGGAAAAGCTGGATCCGTATTGTTCGCAGACGCACACAAGAAGCGAGT
CGGAGAAGGTCTGGTCGAATTCGACTCCAGAAAGGATATGGAACgagctc
tcaaaaaattgaaCGGACTTGAAATTAATGGAAAACCAATTCAACTGGAA
ATCGATGAAGTGAAACGCAGATCACGATCTCGTAGTCGTAGTCGCAACAG
AAGTCGTTCTCGATCACGATCAAGAACCAGATCCAGAAGTCGATCGCGCA
GTCGCTCAAGATCCCGCTCGCGTTCAAGATCACGTTCGCGCGGTCGCTCA
CACAGCCGATCAAAGAGTAGATCAAAGTCAAGATCCAAGTCTAGGTCGAG
ATCGAAATCAAGATCTAAGTCTCGATCACCAAGGCGTTCTCGTTCACGCT
CGAAATCTCGTTCGGCCGAACGTAAATCGGCGGGCGGTGAAGAAAAGAAG
GAGGTGAAGAAAGAGCAAAGCGACGATGAGATGTTTGATGAAGCGGAACG
ATCTGTTAAACGAAATAAGGAGCGACGGAAGGAGAAGGGTGACGCATCGG
AGAGTGAGGGTGAAGGAGGCGAAAAAGCGAAGAAGTCTGAAGGTGGCGAT
GACGATGAAGAAATTGTGGAAGAAATTATTGAGGAAGAAGTCGAAGTTGA
AGAAGAAGTCGAGGAGAGTGAAGgaAACAAGAAAAATACAGAAGACGCTA
AAGAAGAAAACGGGCAAATGGAAGTTGACGAAAATGGAGATGAGCGCTCA
CAAGATGATGACGCGGCCGCCAGTCCAGACGCCGAAGCCGATGGTAAACG
CACACGCGGTCGAAAAGCAGCCGCCTCGTCCGCGCGTAGCACGCGAAGAA
GTTCGAGGCGAGCATCGAAGCCAACGGAAGAGGAGGCGGATGAATGATGA
GGAGAAGTACGCATGCGTcaatttatgttttttataatggaGAGTTTTCA
TATTGTTAACTTGATGCAATGAGAGAGTATTTTTAACGAAGATTTTAACT
AAAACCGCAAACACCATCAAACAATAAACATCGGTATTGGACTTATACAG
TATTTTAAATCATACACGCGATTTGGAATGTCGCTCAACAAAAATTACAT
GTAAATTTATTGGTTTTTCATTGACCAACCTTTTAAaccaaaaaaaggta
aaattcaTGACCAGTTTTTTAAACCAGGAagttaaaatagaatggaagaa
tatagattctcatttttattttcaaaaaaggactttaacaaaaatattat
tgagcaattttttttgccattcTAAAACCTCAGTGTGTaaatatgtttta
tttttgccttgTAGTTTTAAACCTCTCTGACTTGAAATACGATGAATCTG
GTACTGTTCTTCGAATACCATTGGTAATTTCGCTAGGAAGCTCTTCACTT
TGACTTTGATTCAAAACCCTGTTGTACTTTTTCCACCGTAAGACTGAGTA
GAAAACTAAATTGAACCTTAAGGTTACTTGATAGCAGAAATAAAAAATCC
GCAAAAAAGGCCAATTTTATTACCAGGAAAATTATGTCTCACGGTATCCT
TTTAGTACTATAAATAAGGGATTTTTTTGTGTATTTGATATTAACAATGT
CAACATCTTGtacattttaaaagattttctttttattccaataaaaaatg
ttttaatgacAGAAAAGAAAATATCTGGGAATCAACAAG
Run BLAST on NCBI

transcript from alignment at scaffold_202:739682..749858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051517 ID=TCONS_00051517|Name=TCONS_00051517|organism=Clytia hemisphaerica|type=transcript|length=10177bp|location=Sequence derived from alignment at scaffold_202:739682..749858+ (Clytia hemisphaerica)
TTTTagtcaattaaataaaaactaagAACTTCAAGATGCCTCGTTACGAT
GAAGGAAGATCTGAAGGAAGATCTGTTCTTCCAACCAAAAGCATGATGGG
TGGAAGACTTTACGTTGGCAAACTTCCCAGAGACATCAGAGAGCGTGATG
TAGAAAAAGAGTTTCGCAGATACGGACGTGTCAAGGATATTTCCATGAAA
GGAAACTACTGTTTTATcgtaagtttttgttttttctcaagTTTTCATAG
CCTTGCCAGTACGCCTACCCATTTCAATCATAGTTGTCAGAGGGAAGGGT
CAAGCCTTCCCTTCAATAAAGGTTGTAATCCTTATTNCCGCCTACCCATT
TCAATCATAGTTATTAGAGGGAAGGGTCAAGCCTTCCCTTCAATAAAGGT
TGTAATCCTTATTGCAAAAAACTAACTTTGTTTGATCAGAcacaagaata
ttttcagcagAATATGTAATATTTTAAGCATGTAATATTTTGGACATCTA
TCATTTTTTTCTAGCAATACGAAAGCTCGAGGGATGCATCAGATGCTGTC
CACGATTTACACGGTCGCATGCTTTGGGGTGAAAGGTGTATATATTTTTC
CTACTTTGTGCTAtaaatttaaacatttttaaatttggaCTTTTTTCAAT
GGATATCCTGGAATATCGTTGCTTATAATATGCAGGTTTTAGGTGGTCCC
TATTAAATGCacatttattgtttttaaatattttcaaaatcagcTTAAAA
CAATGTCTATTATGTGTTATAGAATGTCAGTGGAGCATGCACGAACACCG
AAAGAGTTTGGATATAGAAGAGGTAGTGGTGGTGGTGGAAGTCGATACCA
TGATAGAGGTTACAGAAGAGATTCATACAGGTTGGTAACCCCTTGTATTG
AATGAATGTAAGAAAAAAGTTGTATAGAAGGTTGTTTGATGTATTCCAAT
CAcatcaaatatttttacccAAAATCCAACTAGATGGTTTTAAGGTATTA
GTGTTttgcttttatattttttgtaaatgATGGGTGGCACAACAATCAGA
AGTTAGTTTATTGTAAAATAATTTGCaatttgcgaaatttaattcccgca
aaaaaatcaaaagagctttcaatttgcaaaatttttaatttttttaaact
tattaataaaaaatgttcaaatacTCTCCTTTTCTGAAGTTTTATAGCAA
GGGACTTTAGTAACAATCATTAAAGCAAATACTTCTACTCTCCACATTAT
AAggaaaattaggaaaattttttaatttatcctCACGACTCacgaaattc
aattcaattacaAACACCTTCGCAATCAAATGGCTTGACTTGGCTTGAAA
TTTCCTTTTGGCAAAAAATTCTGACATTTAAGTATACCGAATTTGAAAGG
ATCCCTCTTTCATACTCCTGAACAGTCCcgaaatctcaaaattattaaaa
tttcaaaataatgaagATGAAATTCATAAGCAACATGGGATATATATATG
ACCTGCTATGACATGGAATCGCCGAAACTCAGAAAACtaaaaggatattt
ttttccgcGAGGACGAGACTGATTTTCTTTAATTTGGCTGCAAAGCAAAT
CTTGCGTTGTAAAATTTACGTCATATGTACTGCAAAATATATTTCCTTGG
TGGAATTGTCTTTTATTGTATGGCCCTCTCTAATTGACACCGTAAACTTT
TATTCCTTCAGAGACTCATACCACTCACGTAGAAGATCGCCTTTGCGCAG
TGACTATCGAATTCTGGTCAAGAACCTATCAACTAGATGTGATTTCCATG
TAAGTTACGATTTAGCTCCATCCTTTAGATTTGTCGCCGACCTCAAATTT
AGTGTCCATGATGGCTTACTTCATGTTTGAGGGCCTTTTACGAGTGCTAA
TCTCAATAAAGGTAAGAAAGACAGAAAGAATGTCAGTTCTATTAGACACT
GATCTCAATGTTGAATCTTTTTCAAAGTATTGCGAATTTACACCCTTTCt
ttctttattgaaagaaaattctCTCTACCAAATGGACCCTAtaattagca
aaaataggttgatatttcaatatttgAGAGAAAGCAGTGTAGCCatcaat
cgaaatttttttgtgTATTTCTTCTTTACAGCTCGTTTTGTCGTGATCAG
GGAGATTTTACGACTATTTCTCCCCGTATTTACGTAAATTTTACGAGCTG
TCTTACGTTACGTTATGTTGTGTCGCTCGGTCATTCGGTCCTGAAACTTG
GATTGCTATTCGTAACCATTGCCACGCGTAAATTCGTTACGAAAGAAAAT
GCTCGAAAACGGAATAAGCTATCGTCACTCGCAATCGCGTTATCCTTATG
CTTTGTTTACGAGCAAGCGTACACTGACGTTATTTTCGCGTTATTTCCAC
GATACGTATTTACGAAATTTACaagttttcgaaattttacactGACGTAC
ACAAGACGATAAAAAAGTCTAGATATTACGGCAACACTACACTTGGCTAT
GGAACAGGTAAGATATTGTTctggaaaatgggaaaaaaatctTTCGCCCC
GCTTTTTGTAGAGCTGGGTTAGTGCCCACTGAATACCCTTGTTGAATTCT
GGGCGTACGCTCTCCAGCTTTTTTCCCCTCGAGGATATTGATAAAAGAGC
AACtttaattttcatcaaatacattttgaaatagacaaattatcgtggct
tggattgAACTCAGACGATGTTGAGCGAATTTGTTGTATTTACGGAGGAC
ATTATCATTGGTAGTTATTGTCGGAGCAGACGAATTGATCAATTAATTCG
ACATAATCGACCGTTCTTTTATCTGGTGAATGAGCTGCATTTGGACATGT
TTTTCACTTCAAGCCTTCGGTTCGATTGATCTTTCATCCCGACAGTTTTG
TTCACGATTGACAACTTATATAATCAATATATTCGGCGCGGAAGAAAGAT
TGATATGACAAGATGACGAAAAAGACGAGATGCTTGATTTTTGCATCCCT
TTTTAGTAGATGGTGCGATCGATCAAAACTATTATATGGAAAATCCGCAG
TCTTCGTAAACGGTAGTTCGCACATAATAACACTTGCAATGACTCGAAAA
GACTCGACGAACATCCATCGGTGACACTTTTTCATACACTTCAATTACAA
ATCATTATGCATCTACTCGAGATGTTTTTTGTCATCTACAGGAAAGGATT
GATACATTTGAAATGTAATTGTCATGTTGAACATTGCGCTGGTCTTCAGT
TTCAATCAATGTGCAATCAGCAACATACCATCACTAACCGGATAACGACA
CAATCAACAATATTTGAACGagtttaaaagttttctcatATGGATATGAG
CTATATCCTCTCTTACCTTTATTCTCGCTTAAATTTTATTCCTATGTTCT
TTCTTTTCGTCTTAGGACTTGAAAGAAGTCTTTGGAAAAGCTGGATCCGT
ATTGTTCGCAGACGCACACAAGAAGCGAGTCGGAGAAGGGTAAGGCTGAT
atcaaaattacatttcttcacTGTTCTTTGCTACCTAAACATTATCAGAA
CTCTTGAAAATGTTTAGTAATATTTAGTAGATCCACTGAGATGTTTTCAC
AAACTCGGCAGGCGTTTTTCAACAACGATTTTGAATCTGTTCTCAAATGT
TttggctaaaatattaaaaattaacTGATCTTGACTTCTCAGAAGCCTGT
TTCAAATAGAGTCGATATGAAATAATTGTATTTTCAGAAGGTCAAACCAG
AAGTCTCACCTTTTTGTTATAATGGTCAACTTCTCTGGACAGCTCAGGTA
GAAATGGCGAAagatgaaaattatgaaaaattctttaaacatTGACGTTT
GCACACTTTTCTTACAGTCTGGTCGAATTCGACTCCAGAAAGGATATGGA
ACgagctctcaaaaaattgaaCGGACTTGAAATTAATGGAAAACCAATTC
AACTGGAAATCGTAAGTCTATTTTTACTCTCGTAAATTGTCCCCATGGAA
TAAATCTATTTAAGCTGGGagaaagtttatttttgacaAATGTAATGTAA
TGGCTTTTTAACCAGACATGAGAATAAAAGCTCAAACTTGTTGTTATAAT
CAACGAATTTTCTCTCGTATACTGTACATACAGTATCTCTCTTTTCATTC
AAATCTCATAATCGAATGcgatatatatatatacaccGACAAGTTTCGAA
AAAATTGCTTCGTGAATCTTTAAATCGTACGCTAGATTTTGTacaaaatt
tcttcaatttcttaaCATTTAGGATGAAGTGAAACGCAGATCACGATCTC
GTAGTCGTAGTCGCAACAGAAGTCGTTCTCGATCACGATCAAGAACCAGA
TCCAGAAGTCGATCGCGCAGTCGCTCAAGATCCCGCTCGCGTTCAAGATC
ACGTTCGCGCGGTCGCTCACACAGCCGATCAAAGAGTAGATCAAAGTCAA
GATCCAAGTCTAGGTCGAGATCGAAATCAAGATCTAAGNAGATCAAAGTC
AAGATCCAAATCTAGGTCGAGATCGAAATCAAGATCTAAGTCTCGATCAC
CAAGGTACTTTTATTCCTCACTCTGTAGGAAAATCTGGGCGCTAGTTCTC
ATTCTGCTAGATAGTCATCGGATCCAACTGCTATTTTCTGCACAATCAAA
TGGCGACTTTCACTCCTCTCCGTTGGAAAATTGACACGTTCTTTTTAGAG
ATCCTtaaaaatatgcgccgtatttttgacggcggattgaatctagcgat
tccCTTGTTTTCTAGTGatgtctttttcaaaatttaggtgtaaattttag
tttcaatctgctGTGATTTGTGTAAAAACAAGGCGGACCGcgctaggccg
cgcaactttggtaggatttggtaGGCTTCAATCCAActatagcccttcgg
gcttatacttcaatGGGTGGGTCACTAATACGCCTGTCAACCTTTACGTT
CAAAGCTGTATAGAAGGGGACTAGGTACGAGTTTACTAGGGTAGAATGGA
CGGTGTCAGATgtctgaagtcgttgcattgataAGCTCACAGATATAAGT
ATGTAAATGTTAagaccggtctccacttgcgcgcgcttcgatcacacctt
ttggcttcaatcctttttgcttggaaagaAGATTACGTCTTAAAATGTAG
CGTGCGCTCGAAAAAAAGAATACATTTTAACTTTTATCagccgttacgtc
agatcgcgccaatggagttgcttcatttttcttttgaccaatagcgtgga
agctttgctcgaaaaagtgcgatcaaagcgcgcgcaagtggagaccggcc
tttagtcGAGCCTGGTAAAGGGCATCCAATCCAATCGTTACTTTAGAATT
GATAGCTGTACGAAATATCGGTTGAAATATACTCCCTCTTTATTCTAGGC
GTTCTCGTTCACGCTCGAAATCTCGTTCGGCCGAACGTAAATCGGCGGGC
GGTGAAGAAAAGAAGGAGGTGAAGAAAGAGCAAAGCGACGATGAGATGTT
TGATGAAGCGGAACGATCTGTTAAACGAAATAAGGTATATTTCCTTCTCC
ATTGNAAAAGAAGGAGGTGAAGAAAGAGCAAAGCGACGATGAGATGTTTG
ATGAAGCGGAACGATCTGTTAAACGAAATAAGGTATATTTCCTTCTCCAT
TGTTGACTACATATCTTAAGTCCGACTCAAAATTTATTGAACACTTtact
ttttaaagaaatttctcAGCACCTATTTATGctatgtcaaaaaatttttc
caatgtgGATTGGCTCAGTCGACATAGCAGTTGCACAGTGATACGTCCTC
CGTTTTTAGTTCGCCATCAAACTGAGGTGTAAGTCCTTGATAATgatatt
gttaaaaaaatatacaccGCTTATTTCCTACAAAATTGCTTGAATAATAT
TCCATCCTCCATCCACTACTGCTCCaagtagcgagcacctcaccaatTTT
TCATCTCGTTAATAGCATAGAAAAAGCGCGGATGACGTCTAATATAAGCT
ACGTTAGAAGCTCCTTTTCATTACATTTCAGGAGCGACAGAAGTATTTAC
CTATAATATTTTAAACGCAAATAAAATTGTTATCGTTACATTTCAGGAGC
GACGGAAGGAGAAGGGTGACGCATCGGAGAGTGAGGGTGAAGGAGGCGAA
AAAGCGAAGAAGTCTGAAGGTGGCGATGACGATGAAGAAATTGTGGAAGA
AATTATTGAGGAAGAAGTCGAAGTTGAAGAAGAAGTCGAGGAGAGTGAAG
GTAAGAATAAGTTGTTCTTACGGTGTTCTTTTAAGTTGTTTCTAagcttg
tttttcttttgatattgttCTTGAAAGAAAACCAGGAGagtgaaatttaa
aaagaatttgtgGAGTTCTTCTAAAATTAAAATGGCTTGAACTGTAGaag
aaaagttaaagaaaagttAAAGTAAGAGGTTATAATTTAGGATaataaaa
gttttcttttcgtaTTTGACTCTGGCTGTCTTCTTAGGTTGTTTTATAGT
TTTGAGTAGCAGTAAAAGAATTTGAGAGAATCACGATTCGGGGCTAGGGG
AGGTTATCTATGTTATACACTTCTTGTTAGACAAATCATATTTTAATTCT
ACCTAAAAACCGAATAGGACTTTTCAAGGCCAACTAACCTTAGAACAGCT
TTATTATCAGAATTTGAGGTGAATTTTGTTCATAGTGTTTATCTTCAGAA
TAGGAAGAGAGAAtagtttcaaaatattttgatgttgcATGCATGTACGT
TTAGAAGAAGAACAGATTGTCCAAGAAATGAGTGAAATCAAAGTTGGAGA
AGAACAAACTAAAACAAGAAAGACAGGTACTGAAGGTAAGTAATAAGTGA
TCATATATAATACACCCGAATGGATTTATTTTATCATCAGCTGCTCTTAT
GTGCTCATGGTTTTCAGGTTGAAATGTTTTCTTAAGATTTTTTCTCACTT
CGCTANAAGAAAAGGTAAAGTAAGAGGTTATAATTtagaataataaaagt
tttcttttcgtaTTTGACTCTGGCTGTCTTCTTAGGTTGTTTTATAGTTT
TGAGTAGCAGTAAAAGAATTTGAGAGAATCACGATTCGGGGCTAGGGGAG
GTTATCTATATTATACACTTCTTGTTAGACAAATCATATTTTAATTCTAC
CTAAAAACCGAATAGTACTTTCCAAGGCCAACTAACCTTAGAACAGCTTT
ATTATCAGAATTTGAGGTGAATTTTGTTCATAGTGTTTATCTTCAGAATA
GGAAGAGAGAAtagtttcaaaatattttgatgttgcATGCATGTACGTTT
AGAAGAAGAACAGATTGTCCAAGAAATGAGTGAAATCAAAGTTGGAGAAG
AACAAACTAAAACAAGAAAGACAGGTACTGAAGGTAAGTAATAAGTGATC
ATATATAATACACCCGAATGGATTTATTTTATCATCAACTGCTCTTATGT
GCTCATGGTTTTCAGGTTGAAATGTTTTCTTAAGATTTTTTCTCACTTCG
CTACTTTGTTGCATTTAGGGGCCTGAAATCATAAACTTctttacaatttt
gaaaattccagcCTCGAAGTGCTATTAACTCTTTAGCCTCTCTTAAAATT
AGTTCTTAAAACACAAGATTAGTGATATACGGAAATAAAAGTAATTTGAG
GACAGGAATAAGGTGTTCTTTGGttctaaagtaattttttaggatactgt
attacttcgaataaacgccccttcttttaaacgctcCCGTCGAATAAAgg
cccctcctaaaatccaaaCAATTTAATAACCCCCCGGGTCATTTCAtccg
aagtaatacggtatataAGCTCAAACATGGACTGACGTCTGTATTTTGAA
CAATAGCCTGCACAAAATAAGATCTGCATGAAGGAAATAAAAACTTAATC
TAGGAACGATAGTCAGGGTAGTTTTTCTCTATGGAACAAGGTAGTTTTTA
TTACGTTTNCGATAGTCAGGGTAGTTTGTCTCTATGAAACAAGGTAGTTT
TTATTACGTTTTTAGATTCGCGATGCATTATTCTGTAGATTGAAGTAAGC
GTTGTCAATTAAGTTTTTCCGAGGTGCTTTTTTTTGCATAGTTATACTAA
CTATTAGGTTATACTTTCTTTGCAGTCCTGTTTGTGTtacgtaaagtttt
tttctacGTGTTTTTTTAGGCAGggtcatggcgttctaaatttgtttaag
ggctctgaccatagtgaatttttaatatttgccacgtacaaaatataaat
ttctgctTGATGTAGTCCACAAAACTGGGGCATGttaaacattttctgtt
agacaaattATCCTTGTTTTTGAGTCTGAAAActtaagaatcgcaatgaa
aaaatttgatgaagaagaaaatgaagaattttgcgaagaagagtatttca
actttgaagagcttattttcggcgaagaaaaaatattttgaaattttttt
tgcggtagatggtttatcttttaccgaactaaaaatagattttcggaaaa
tttttctaaaagcttatttgtctcaaaatcttgaaaatattgctttttga
ccagtttttcaacccaatttttcatagataaacagccataacttttaccg
aactaatttagaaaatttttccgaaaaatttaaaacagttcaattctttg
cgaacagtttgaaaaaacttcgaaacaaaaaggttaattacccattaaaa
cttagcactttttataaaagaaggtaatgcaacatattattaacgtcttt
ttaaagttcatagcgtcatttttgtaactaaattcttaattactcttaag
ggatttgattaaaaagctatttatataggcaattctttgttaaaagtgtt
aaagaacctaaaacataccTTTTATGTTCAAAcactaaaatctatttttt
gactatggtcagagcccttaagataCAAATAGCCTGAATGAAAATTTGTC
TAGCGAACGCTTTTccatgtttattttttattattttttttttacacttt
catACTGAAACAGATTGTGAATTCTCCTTCGCCCAGCAGATCAAGGTTCC
GTCATCAAATGATAGTTTTTCCTATAAACATGCGTGTGATCCCTTTGGTA
CCCTTGAATTTCTTGATTATTCAATCATctgaattgttttcttttctttt
ttttctcaaaggaAACAAGAAAAATACAGAAGACGCTAAAGAAGAAAACG
GGCAAATGGAAGTTGACGAAAATGGAGATGAGCGCTCACAAGATGATGAC
GCGGCCGCCAGTCCAGACGCCGAAGCCGATGGTAAACGCACACGCGGTCG
AAAAGCAGCCGCCTCGTCCGCGCGTAGCACGCGAAGAAGTTCGAGGCGAG
CATCGAAGCCAACGGAAGAGGAGGCGGATGAATGATGAGGAGAAGTACGC
ATGCGTcaatttatgttttttataatggaGAGTTTTCATATTGTTAACTT
GATGCAATGAGAGAGTATTTTTAACGAAGATTTTAACTAAAACCGCAAAC
ACCATCAAACAATAAACATCGGTATTGGACTTATACAGTATTTTAAATCA
TACACGCGATTTGGAATGTCGCTCAACAAAAATTACATGTAAATTTATTG
GTTTTTCATTGACCAACCTTTTAAaccaaaaaaaggtaaaattcaTGACC
AGTTTTTTAAACCAGGAagttaaaatagaatggaagaatatagattctca
tttttattttcaaaaaaggactttaacaaaaatattattgagcaattttt
tttgccattcTAAAACCTCAGTGTGTaaatatgttttatttttgccttgT
AGTTTTAAACCTCTCTGACTTGAAATACGATGAATCTGGTACTGTTCTTC
GAATACCATTGGTAATTTCGCTAGGAAGCTCTTCACTTTGACTTTGATTC
AAAACCCTGTTGTACTTTTTCCACCGTAAGACTGAGTAGAAAACTAAATT
GAACCTTAAGGTTACTTGATAGCAGAAATAAAAAATCCGCAAAAAAGGCC
AATTTTATTACCAGGAAAATTATGTCTCACGGTATCCTTTTAGTACTATA
AATAAGGGATTTTTTTGTGTATTTGATATTAACAATGTCAACATCTTGta
cattttaaaagattttctttttattccaataaaaaatgttttaatgacAG
AAAAGAAAATATCTGGGAATCAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032647XLOC_032647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051517-exon-scaffold_202-1491911889:739682..739899TCONS_00051517-exon-scaffold_202-1491911889:739682..739899Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:739682..739899TCONS_00051517-exon-scaffold_202-1510915933:739682..739899Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:739682..739899TCONS_00051517-exon-scaffold_202-1575043694:739682..739899Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:740196..740266TCONS_00051517-exon-scaffold_202-1491911889:740196..740266Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:740196..740266TCONS_00051517-exon-scaffold_202-1510915933:740196..740266Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:740196..740266TCONS_00051517-exon-scaffold_202-1575043694:740196..740266Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:740454..740561TCONS_00051517-exon-scaffold_202-1491911889:740454..740561Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:740454..740561TCONS_00051517-exon-scaffold_202-1510915933:740454..740561Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:740454..740561TCONS_00051517-exon-scaffold_202-1575043694:740454..740561Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:741393..741480TCONS_00051517-exon-scaffold_202-1491911889:741393..741480Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:741393..741480TCONS_00051517-exon-scaffold_202-1510915933:741393..741480Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:741393..741480TCONS_00051517-exon-scaffold_202-1575043694:741393..741480Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:743097..743170TCONS_00051517-exon-scaffold_202-1491911889:743097..743170Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:743097..743170TCONS_00051517-exon-scaffold_202-1510915933:743097..743170Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:743097..743170TCONS_00051517-exon-scaffold_202-1575043694:743097..743170Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:743549..743642TCONS_00051517-exon-scaffold_202-1491911889:743549..743642Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:743549..743642TCONS_00051517-exon-scaffold_202-1510915933:743549..743642Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:743549..743642TCONS_00051517-exon-scaffold_202-1575043694:743549..743642Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:743954..744144TCONS_00051517-exon-scaffold_202-1491911889:743954..744144Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:743954..744144TCONS_00051517-exon-scaffold_202-1510915933:743954..744144Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:743954..744144TCONS_00051517-exon-scaffold_202-1575043694:743954..744144Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:744197..744235TCONS_00051517-exon-scaffold_202-1491911889:744197..744235Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:744197..744235TCONS_00051517-exon-scaffold_202-1510915933:744197..744235Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:744197..744235TCONS_00051517-exon-scaffold_202-1575043694:744197..744235Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:745080..745149TCONS_00051517-exon-scaffold_202-1491911889:745080..745149Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:745080..745149TCONS_00051517-exon-scaffold_202-1510915933:745080..745149Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:745080..745149TCONS_00051517-exon-scaffold_202-1575043694:745080..745149Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:745248..745313TCONS_00051517-exon-scaffold_202-1491911889:745248..745313Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:745248..745313TCONS_00051517-exon-scaffold_202-1510915933:745248..745313Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:745248..745313TCONS_00051517-exon-scaffold_202-1575043694:745248..745313Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:745778..745931TCONS_00051517-exon-scaffold_202-1491911889:745778..745931Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:745778..745931TCONS_00051517-exon-scaffold_202-1510915933:745778..745931Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:745778..745931TCONS_00051517-exon-scaffold_202-1575043694:745778..745931Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1491911889:748843..749858TCONS_00051517-exon-scaffold_202-1491911889:748843..749858Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1510915933:748843..749858TCONS_00051517-exon-scaffold_202-1510915933:748843..749858Clytia hemisphaericaexon
TCONS_00051517-exon-scaffold_202-1575043694:748843..749858TCONS_00051517-exon-scaffold_202-1575043694:748843..749858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:739682..749858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.6804	21.8885	56.5854	55.5371	6.31075e-05	6.32679e-07	1.51925	7.10248e-05	69.0416	68.9293	50.1146	58.9089	67.0251	74.1613	60.6916	67.0803	71.7566	66.7529	10.0646	25.3359	41.7647	52.7326	27.3075	25.7238	6.92189e-09	4.32589e-06	30.3203	37.08	18.4188	18.4557
Blast
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BLAST of TCONS_00051517 vs. Swiss-Prot (Human)
Match: SRSF6 (Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.283e-39
Identity = 80/181 (44.20%), Postives = 121/181 (66.85%), Query Frame = 3 
Query:  105 RLYVGKLPRDIRERDVEKEFRRYGRVKDISMKGNYCFIQYESSRDASDAVHDLHGRMLWGERMSVEHARTPKEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRSDYRILVKNLSTRCDFHDLKEVFGKAGSVLFADAHKKRVGEGLVEFDSRKDMERALKKLNGLEINGKPIQL 647
            R+Y+G+L  ++RE+D+++ F  YGR+ ++ +K  Y F+++E SRDA DAV++L+G+ L GER+ VEHAR P+         G        G    S R S   +   P+R++YR++V+NLS+RC + DLK+   +AG V +ADAHK+R  EG++EF S  DM+RAL KL+G EING+ I+L
Sbjct:    3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRR-----DRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
The following BLAST results are available for this feature:
BLAST of TCONS_00051517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF61.283e-3944.20Serine/arginine-rich splicing factor 6 OS=Homo sap... [more]
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