TCONS_00051514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051514
Unique NameTCONS_00051514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051514 ID=TCONS_00051514|Name=TCONS_00051514|organism=Clytia hemisphaerica|type=transcript|length=2250bp
TttcattctcaaaaatttagatATTGGTCAAGTATTAAACTTCTATGTTA
CTACATGTTCTTTTTagtcaattaaataaaaactaagAACTTCAAGATGC
CTCGTTACGATGAAGGAAGATCTGAAGGAAGATCTGTTCTTCCAACCAAA
AGCATGATGGGTGGAAGACTTTACGTTGGCAAACTTCCCAGAGACATCAG
AGAGCGTGATGTAGAAAAAGAGTTTCGCAGATACGGACGTGTCAAGGATA
TTTCCATGAAAGGAAACTACTGTTTTATcCAATACGAAAGCTCGAGGGAT
GCATCAGATGCTGTCCACGATTTACACGGTCGCATGCTTTGGGGTGAAAG
AATGTCAGTGGAGCATGCACGAACACCGAAAGAGTTTGGATATAGAAGAG
GTAGTGGTGGTGGTGGAAGTCGATACCATGATAGAGGTTACAGAAGAGAT
TCATACAGAGACTCATACCACTCACGTAGAAGATCGCCTTTGCGCAGTGA
CTATCGAATTCTGGTCAAGAACCTATCAACTAGATGTGATTTCCATGACT
TGAAAGAAGTCTTTGGAAAAGCTGGATCCGTATTGTTCGCAGACGCACAC
AAGAAGCGAGTCGGAGAAGGTCTGGTCGAATTCGACTCCAGAAAGGATAT
GGAACgagctctcaaaaaattgaaCGGACTTGAAATTAATGGAAAACCAA
TTCAACTGGAAATCGATGAAGTGAAACGCAGATCACGATCTCGTAGTCGT
AGTCGCAACAGAAGTCGTTCTCGATCACGATCAAGAACCAGATCCAGAAG
TCGATCGCGCAGTCGCTCAAGATCCCGCTCGCGTTCAAGATCACGTTCGC
GCGGTCGCTCACACAGCCGATCAAAGAGTAGATCAAAGTCAAGATCCAAG
TCTAGGTCGAGATCGAAATCAAGATCTAAGTCTCGATCACCAAGGCGTTC
TCGTTCACGCTCGAAATCTCGTTCGGCCGAACGTAAATCGGCGGGCGGTG
AAGAAAAGAAGGAGGTGAAGAAAGAGCAAAGCGACGATGAGATGTTTGAT
GAAGCGGAACGATCTGTTAAACGAAATAAGGAGCGACGGAAGGAGAAGGG
TGACGCATCGGAGAGTGAGGGTGAAGGAGGCGAAAAAGCGAAGAAGTCTG
AAGGTGGCGATGACGATGAAGAAATTGTGGAAGAAATTATTGAGGAAGAA
GTCGAAGTTGAAGAAGAAGTCGAGGAGAGTGAAGgaAACAAGAAAAATAC
AGAAGACGCTAAAGAAGAAAACGGGCAAATGGAAGTTGACGAAAATGGAG
ATGAGCGCTCACAAGATGATGACGCGGCCGCCAGTCCAGACGCCGAAGCC
GATGGTAAACGCACACGCGGTCGAAAAGCAGCCGCCTCGTCCGCGCGTAG
CACGCGAAGAAGTTCGAGGCGAGCATCGAAGCCAACGGAAGAGGAGGCGG
ATGAATGATGAGGAGAAGTACGCATGCGTcaatttatgttttttataatg
gaGAGTTTTCATATTGTTAACTTGATGCAATGAGAGAGTATTTTTAACGA
AGATTTTAACTAAAACCGCAAACACCATCAAACAATAAACATCGGTATTG
GACTTATACAGTATTTTAAATCATACACGCGATTTGGAATGTCGCTCAAC
AAAAATTACATGTAAATTTATTGGTTTTTCATTGACCAACCTTTTAAacc
aaaaaaaggtaaaattcaTGACCAGTTTTTTAAACCAGGAagttaaaata
gaatggaagaatatagattctcatttttattttcaaaaaaggactttaac
aaaaatattattgagcaattttttttgccattcTAAAACCTCAGTGTGTa
aatatgttttatttttgccttgTAGTTTTAAACCTCTCTGACTTGAAATA
CGATGAATCTGGTACTGTTCTTCGAATACCATTGGTAATTTCGCTAGGAA
GCTCTTCACTTTGACTTTGATTCAAAACCCTGTTGTACTTTTTCCACCGT
AAGACTGAGTAGAAAACTAAATTGAACCTTAAGGTTACTTGATAGCAGAA
ATAAAAAATCCGCAAAAAAGGCCAATTTTATTACCAGGAAAATTATGTCT
CACGGTATCCTTTTAGTACTATAAATAAGGGATTTTTTTGTGTATTTGAT
ATTAACAATGTCAACATCTTGtacattttaaaagattttctttttattcc
aataaaaaatgttttaatgacAGAAAAGAAAATATCTGGGAATCAACAAG
Run BLAST on NCBI

transcript from alignment at scaffold_202:739621..749858+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051514 ID=TCONS_00051514|Name=TCONS_00051514|organism=Clytia hemisphaerica|type=transcript|length=10238bp|location=Sequence derived from alignment at scaffold_202:739621..749858+ (Clytia hemisphaerica)
TttcattctcaaaaatttagatATTGGTCAAGTATTAAACTTCTATGTTA
CTACATGTTCTTTTTagtcaattaaataaaaactaagAACTTCAAGATGC
CTCGTTACGATGAAGGAAGATCTGAAGGAAGATCTGTTCTTCCAACCAAA
AGCATGATGGGTGGAAGACTTTACGTTGGCAAACTTCCCAGAGACATCAG
AGAGCGTGATGTAGAAAAAGAGTTTCGCAGATACGGACGTGTCAAGGATA
TTTCCATGAAAGGAAACTACTGTTTTATcgtaagtttttgttttttctca
agTTTTCATAGCCTTGCCAGTACGCCTACCCATTTCAATCATAGTTGTCA
GAGGGAAGGGTCAAGCCTTCCCTTCAATAAAGGTTGTAATCCTTATTNCC
GCCTACCCATTTCAATCATAGTTATTAGAGGGAAGGGTCAAGCCTTCCCT
TCAATAAAGGTTGTAATCCTTATTGCAAAAAACTAACTTTGTTTGATCAG
AcacaagaatattttcagcagAATATGTAATATTTTAAGCATGTAATATT
TTGGACATCTATCATTTTTTTCTAGCAATACGAAAGCTCGAGGGATGCAT
CAGATGCTGTCCACGATTTACACGGTCGCATGCTTTGGGGTGAAAGGTGT
ATATATTTTTCCTACTTTGTGCTAtaaatttaaacatttttaaatttgga
CTTTTTTCAATGGATATCCTGGAATATCGTTGCTTATAATATGCAGGTTT
TAGGTGGTCCCTATTAAATGCacatttattgtttttaaatattttcaaaa
tcagcTTAAAACAATGTCTATTATGTGTTATAGAATGTCAGTGGAGCATG
CACGAACACCGAAAGAGTTTGGATATAGAAGAGGTAGTGGTGGTGGTGGA
AGTCGATACCATGATAGAGGTTACAGAAGAGATTCATACAGGTTGGTAAC
CCCTTGTATTGAATGAATGTAAGAAAAAAGTTGTATAGAAGGTTGTTTGA
TGTATTCCAATCAcatcaaatatttttacccAAAATCCAACTAGATGGTT
TTAAGGTATTAGTGTTttgcttttatattttttgtaaatgATGGGTGGCA
CAACAATCAGAAGTTAGTTTATTGTAAAATAATTTGCaatttgcgaaatt
taattcccgcaaaaaaatcaaaagagctttcaatttgcaaaatttttaat
ttttttaaacttattaataaaaaatgttcaaatacTCTCCTTTTCTGAAG
TTTTATAGCAAGGGACTTTAGTAACAATCATTAAAGCAAATACTTCTACT
CTCCACATTATAAggaaaattaggaaaattttttaatttatcctCACGAC
TCacgaaattcaattcaattacaAACACCTTCGCAATCAAATGGCTTGAC
TTGGCTTGAAATTTCCTTTTGGCAAAAAATTCTGACATTTAAGTATACCG
AATTTGAAAGGATCCCTCTTTCATACTCCTGAACAGTCCcgaaatctcaa
aattattaaaatttcaaaataatgaagATGAAATTCATAAGCAACATGGG
ATATATATATGACCTGCTATGACATGGAATCGCCGAAACTCAGAAAACta
aaaggatatttttttccgcGAGGACGAGACTGATTTTCTTTAATTTGGCT
GCAAAGCAAATCTTGCGTTGTAAAATTTACGTCATATGTACTGCAAAATA
TATTTCCTTGGTGGAATTGTCTTTTATTGTATGGCCCTCTCTAATTGACA
CCGTAAACTTTTATTCCTTCAGAGACTCATACCACTCACGTAGAAGATCG
CCTTTGCGCAGTGACTATCGAATTCTGGTCAAGAACCTATCAACTAGATG
TGATTTCCATGTAAGTTACGATTTAGCTCCATCCTTTAGATTTGTCGCCG
ACCTCAAATTTAGTGTCCATGATGGCTTACTTCATGTTTGAGGGCCTTTT
ACGAGTGCTAATCTCAATAAAGGTAAGAAAGACAGAAAGAATGTCAGTTC
TATTAGACACTGATCTCAATGTTGAATCTTTTTCAAAGTATTGCGAATTT
ACACCCTTTCtttctttattgaaagaaaattctCTCTACCAAATGGACCC
TAtaattagcaaaaataggttgatatttcaatatttgAGAGAAAGCAGTG
TAGCCatcaatcgaaatttttttgtgTATTTCTTCTTTACAGCTCGTTTT
GTCGTGATCAGGGAGATTTTACGACTATTTCTCCCCGTATTTACGTAAAT
TTTACGAGCTGTCTTACGTTACGTTATGTTGTGTCGCTCGGTCATTCGGT
CCTGAAACTTGGATTGCTATTCGTAACCATTGCCACGCGTAAATTCGTTA
CGAAAGAAAATGCTCGAAAACGGAATAAGCTATCGTCACTCGCAATCGCG
TTATCCTTATGCTTTGTTTACGAGCAAGCGTACACTGACGTTATTTTCGC
GTTATTTCCACGATACGTATTTACGAAATTTACaagttttcgaaatttta
cactGACGTACACAAGACGATAAAAAAGTCTAGATATTACGGCAACACTA
CACTTGGCTATGGAACAGGTAAGATATTGTTctggaaaatgggaaaaaaa
tctTTCGCCCCGCTTTTTGTAGAGCTGGGTTAGTGCCCACTGAATACCCT
TGTTGAATTCTGGGCGTACGCTCTCCAGCTTTTTTCCCCTCGAGGATATT
GATAAAAGAGCAACtttaattttcatcaaatacattttgaaatagacaaa
ttatcgtggcttggattgAACTCAGACGATGTTGAGCGAATTTGTTGTAT
TTACGGAGGACATTATCATTGGTAGTTATTGTCGGAGCAGACGAATTGAT
CAATTAATTCGACATAATCGACCGTTCTTTTATCTGGTGAATGAGCTGCA
TTTGGACATGTTTTTCACTTCAAGCCTTCGGTTCGATTGATCTTTCATCC
CGACAGTTTTGTTCACGATTGACAACTTATATAATCAATATATTCGGCGC
GGAAGAAAGATTGATATGACAAGATGACGAAAAAGACGAGATGCTTGATT
TTTGCATCCCTTTTTAGTAGATGGTGCGATCGATCAAAACTATTATATGG
AAAATCCGCAGTCTTCGTAAACGGTAGTTCGCACATAATAACACTTGCAA
TGACTCGAAAAGACTCGACGAACATCCATCGGTGACACTTTTTCATACAC
TTCAATTACAAATCATTATGCATCTACTCGAGATGTTTTTTGTCATCTAC
AGGAAAGGATTGATACATTTGAAATGTAATTGTCATGTTGAACATTGCGC
TGGTCTTCAGTTTCAATCAATGTGCAATCAGCAACATACCATCACTAACC
GGATAACGACACAATCAACAATATTTGAACGagtttaaaagttttctcat
ATGGATATGAGCTATATCCTCTCTTACCTTTATTCTCGCTTAAATTTTAT
TCCTATGTTCTTTCTTTTCGTCTTAGGACTTGAAAGAAGTCTTTGGAAAA
GCTGGATCCGTATTGTTCGCAGACGCACACAAGAAGCGAGTCGGAGAAGG
GTAAGGCTGATatcaaaattacatttcttcacTGTTCTTTGCTACCTAAA
CATTATCAGAACTCTTGAAAATGTTTAGTAATATTTAGTAGATCCACTGA
GATGTTTTCACAAACTCGGCAGGCGTTTTTCAACAACGATTTTGAATCTG
TTCTCAAATGTTttggctaaaatattaaaaattaacTGATCTTGACTTCT
CAGAAGCCTGTTTCAAATAGAGTCGATATGAAATAATTGTATTTTCAGAA
GGTCAAACCAGAAGTCTCACCTTTTTGTTATAATGGTCAACTTCTCTGGA
CAGCTCAGGTAGAAATGGCGAAagatgaaaattatgaaaaattctttaaa
catTGACGTTTGCACACTTTTCTTACAGTCTGGTCGAATTCGACTCCAGA
AAGGATATGGAACgagctctcaaaaaattgaaCGGACTTGAAATTAATGG
AAAACCAATTCAACTGGAAATCGTAAGTCTATTTTTACTCTCGTAAATTG
TCCCCATGGAATAAATCTATTTAAGCTGGGagaaagtttatttttgacaA
ATGTAATGTAATGGCTTTTTAACCAGACATGAGAATAAAAGCTCAAACTT
GTTGTTATAATCAACGAATTTTCTCTCGTATACTGTACATACAGTATCTC
TCTTTTCATTCAAATCTCATAATCGAATGcgatatatatatatacaccGA
CAAGTTTCGAAAAAATTGCTTCGTGAATCTTTAAATCGTACGCTAGATTT
TGTacaaaatttcttcaatttcttaaCATTTAGGATGAAGTGAAACGCAG
ATCACGATCTCGTAGTCGTAGTCGCAACAGAAGTCGTTCTCGATCACGAT
CAAGAACCAGATCCAGAAGTCGATCGCGCAGTCGCTCAAGATCCCGCTCG
CGTTCAAGATCACGTTCGCGCGGTCGCTCACACAGCCGATCAAAGAGTAG
ATCAAAGTCAAGATCCAAGTCTAGGTCGAGATCGAAATCAAGATCTAAGN
AGATCAAAGTCAAGATCCAAATCTAGGTCGAGATCGAAATCAAGATCTAA
GTCTCGATCACCAAGGTACTTTTATTCCTCACTCTGTAGGAAAATCTGGG
CGCTAGTTCTCATTCTGCTAGATAGTCATCGGATCCAACTGCTATTTTCT
GCACAATCAAATGGCGACTTTCACTCCTCTCCGTTGGAAAATTGACACGT
TCTTTTTAGAGATCCTtaaaaatatgcgccgtatttttgacggcggattg
aatctagcgattccCTTGTTTTCTAGTGatgtctttttcaaaatttaggt
gtaaattttagtttcaatctgctGTGATTTGTGTAAAAACAAGGCGGACC
GcgctaggccgcgcaactttggtaggatttggtaGGCTTCAATCCAActa
tagcccttcgggcttatacttcaatGGGTGGGTCACTAATACGCCTGTCA
ACCTTTACGTTCAAAGCTGTATAGAAGGGGACTAGGTACGAGTTTACTAG
GGTAGAATGGACGGTGTCAGATgtctgaagtcgttgcattgataAGCTCA
CAGATATAAGTATGTAAATGTTAagaccggtctccacttgcgcgcgcttc
gatcacaccttttggcttcaatcctttttgcttggaaagaAGATTACGTC
TTAAAATGTAGCGTGCGCTCGAAAAAAAGAATACATTTTAACTTTTATCa
gccgttacgtcagatcgcgccaatggagttgcttcatttttcttttgacc
aatagcgtggaagctttgctcgaaaaagtgcgatcaaagcgcgcgcaagt
ggagaccggcctttagtcGAGCCTGGTAAAGGGCATCCAATCCAATCGTT
ACTTTAGAATTGATAGCTGTACGAAATATCGGTTGAAATATACTCCCTCT
TTATTCTAGGCGTTCTCGTTCACGCTCGAAATCTCGTTCGGCCGAACGTA
AATCGGCGGGCGGTGAAGAAAAGAAGGAGGTGAAGAAAGAGCAAAGCGAC
GATGAGATGTTTGATGAAGCGGAACGATCTGTTAAACGAAATAAGGTATA
TTTCCTTCTCCATTGNAAAAGAAGGAGGTGAAGAAAGAGCAAAGCGACGA
TGAGATGTTTGATGAAGCGGAACGATCTGTTAAACGAAATAAGGTATATT
TCCTTCTCCATTGTTGACTACATATCTTAAGTCCGACTCAAAATTTATTG
AACACTTtactttttaaagaaatttctcAGCACCTATTTATGctatgtca
aaaaatttttccaatgtgGATTGGCTCAGTCGACATAGCAGTTGCACAGT
GATACGTCCTCCGTTTTTAGTTCGCCATCAAACTGAGGTGTAAGTCCTTG
ATAATgatattgttaaaaaaatatacaccGCTTATTTCCTACAAAATTGC
TTGAATAATATTCCATCCTCCATCCACTACTGCTCCaagtagcgagcacc
tcaccaatTTTTCATCTCGTTAATAGCATAGAAAAAGCGCGGATGACGTC
TAATATAAGCTACGTTAGAAGCTCCTTTTCATTACATTTCAGGAGCGACA
GAAGTATTTACCTATAATATTTTAAACGCAAATAAAATTGTTATCGTTAC
ATTTCAGGAGCGACGGAAGGAGAAGGGTGACGCATCGGAGAGTGAGGGTG
AAGGAGGCGAAAAAGCGAAGAAGTCTGAAGGTGGCGATGACGATGAAGAA
ATTGTGGAAGAAATTATTGAGGAAGAAGTCGAAGTTGAAGAAGAAGTCGA
GGAGAGTGAAGGTAAGAATAAGTTGTTCTTACGGTGTTCTTTTAAGTTGT
TTCTAagcttgtttttcttttgatattgttCTTGAAAGAAAACCAGGAGa
gtgaaatttaaaaagaatttgtgGAGTTCTTCTAAAATTAAAATGGCTTG
AACTGTAGaagaaaagttaaagaaaagttAAAGTAAGAGGTTATAATTTA
GGATaataaaagttttcttttcgtaTTTGACTCTGGCTGTCTTCTTAGGT
TGTTTTATAGTTTTGAGTAGCAGTAAAAGAATTTGAGAGAATCACGATTC
GGGGCTAGGGGAGGTTATCTATGTTATACACTTCTTGTTAGACAAATCAT
ATTTTAATTCTACCTAAAAACCGAATAGGACTTTTCAAGGCCAACTAACC
TTAGAACAGCTTTATTATCAGAATTTGAGGTGAATTTTGTTCATAGTGTT
TATCTTCAGAATAGGAAGAGAGAAtagtttcaaaatattttgatgttgcA
TGCATGTACGTTTAGAAGAAGAACAGATTGTCCAAGAAATGAGTGAAATC
AAAGTTGGAGAAGAACAAACTAAAACAAGAAAGACAGGTACTGAAGGTAA
GTAATAAGTGATCATATATAATACACCCGAATGGATTTATTTTATCATCA
GCTGCTCTTATGTGCTCATGGTTTTCAGGTTGAAATGTTTTCTTAAGATT
TTTTCTCACTTCGCTANAAGAAAAGGTAAAGTAAGAGGTTATAATTtaga
ataataaaagttttcttttcgtaTTTGACTCTGGCTGTCTTCTTAGGTTG
TTTTATAGTTTTGAGTAGCAGTAAAAGAATTTGAGAGAATCACGATTCGG
GGCTAGGGGAGGTTATCTATATTATACACTTCTTGTTAGACAAATCATAT
TTTAATTCTACCTAAAAACCGAATAGTACTTTCCAAGGCCAACTAACCTT
AGAACAGCTTTATTATCAGAATTTGAGGTGAATTTTGTTCATAGTGTTTA
TCTTCAGAATAGGAAGAGAGAAtagtttcaaaatattttgatgttgcATG
CATGTACGTTTAGAAGAAGAACAGATTGTCCAAGAAATGAGTGAAATCAA
AGTTGGAGAAGAACAAACTAAAACAAGAAAGACAGGTACTGAAGGTAAGT
AATAAGTGATCATATATAATACACCCGAATGGATTTATTTTATCATCAAC
TGCTCTTATGTGCTCATGGTTTTCAGGTTGAAATGTTTTCTTAAGATTTT
TTCTCACTTCGCTACTTTGTTGCATTTAGGGGCCTGAAATCATAAACTTc
tttacaattttgaaaattccagcCTCGAAGTGCTATTAACTCTTTAGCCT
CTCTTAAAATTAGTTCTTAAAACACAAGATTAGTGATATACGGAAATAAA
AGTAATTTGAGGACAGGAATAAGGTGTTCTTTGGttctaaagtaattttt
taggatactgtattacttcgaataaacgccccttcttttaaacgctcCCG
TCGAATAAAggcccctcctaaaatccaaaCAATTTAATAACCCCCCGGGT
CATTTCAtccgaagtaatacggtatataAGCTCAAACATGGACTGACGTC
TGTATTTTGAACAATAGCCTGCACAAAATAAGATCTGCATGAAGGAAATA
AAAACTTAATCTAGGAACGATAGTCAGGGTAGTTTTTCTCTATGGAACAA
GGTAGTTTTTATTACGTTTNCGATAGTCAGGGTAGTTTGTCTCTATGAAA
CAAGGTAGTTTTTATTACGTTTTTAGATTCGCGATGCATTATTCTGTAGA
TTGAAGTAAGCGTTGTCAATTAAGTTTTTCCGAGGTGCTTTTTTTTGCAT
AGTTATACTAACTATTAGGTTATACTTTCTTTGCAGTCCTGTTTGTGTta
cgtaaagtttttttctacGTGTTTTTTTAGGCAGggtcatggcgttctaa
atttgtttaagggctctgaccatagtgaatttttaatatttgccacgtac
aaaatataaatttctgctTGATGTAGTCCACAAAACTGGGGCATGttaaa
cattttctgttagacaaattATCCTTGTTTTTGAGTCTGAAAActtaaga
atcgcaatgaaaaaatttgatgaagaagaaaatgaagaattttgcgaaga
agagtatttcaactttgaagagcttattttcggcgaagaaaaaatatttt
gaaattttttttgcggtagatggtttatcttttaccgaactaaaaataga
ttttcggaaaatttttctaaaagcttatttgtctcaaaatcttgaaaata
ttgctttttgaccagtttttcaacccaatttttcatagataaacagccat
aacttttaccgaactaatttagaaaatttttccgaaaaatttaaaacagt
tcaattctttgcgaacagtttgaaaaaacttcgaaacaaaaaggttaatt
acccattaaaacttagcactttttataaaagaaggtaatgcaacatatta
ttaacgtctttttaaagttcatagcgtcatttttgtaactaaattcttaa
ttactcttaagggatttgattaaaaagctatttatataggcaattctttg
ttaaaagtgttaaagaacctaaaacataccTTTTATGTTCAAAcactaaa
atctattttttgactatggtcagagcccttaagataCAAATAGCCTGAAT
GAAAATTTGTCTAGCGAACGCTTTTccatgtttattttttattatttttt
ttttacactttcatACTGAAACAGATTGTGAATTCTCCTTCGCCCAGCAG
ATCAAGGTTCCGTCATCAAATGATAGTTTTTCCTATAAACATGCGTGTGA
TCCCTTTGGTACCCTTGAATTTCTTGATTATTCAATCATctgaattgttt
tcttttcttttttttctcaaaggaAACAAGAAAAATACAGAAGACGCTAA
AGAAGAAAACGGGCAAATGGAAGTTGACGAAAATGGAGATGAGCGCTCAC
AAGATGATGACGCGGCCGCCAGTCCAGACGCCGAAGCCGATGGTAAACGC
ACACGCGGTCGAAAAGCAGCCGCCTCGTCCGCGCGTAGCACGCGAAGAAG
TTCGAGGCGAGCATCGAAGCCAACGGAAGAGGAGGCGGATGAATGATGAG
GAGAAGTACGCATGCGTcaatttatgttttttataatggaGAGTTTTCAT
ATTGTTAACTTGATGCAATGAGAGAGTATTTTTAACGAAGATTTTAACTA
AAACCGCAAACACCATCAAACAATAAACATCGGTATTGGACTTATACAGT
ATTTTAAATCATACACGCGATTTGGAATGTCGCTCAACAAAAATTACATG
TAAATTTATTGGTTTTTCATTGACCAACCTTTTAAaccaaaaaaaggtaa
aattcaTGACCAGTTTTTTAAACCAGGAagttaaaatagaatggaagaat
atagattctcatttttattttcaaaaaaggactttaacaaaaatattatt
gagcaattttttttgccattcTAAAACCTCAGTGTGTaaatatgttttat
ttttgccttgTAGTTTTAAACCTCTCTGACTTGAAATACGATGAATCTGG
TACTGTTCTTCGAATACCATTGGTAATTTCGCTAGGAAGCTCTTCACTTT
GACTTTGATTCAAAACCCTGTTGTACTTTTTCCACCGTAAGACTGAGTAG
AAAACTAAATTGAACCTTAAGGTTACTTGATAGCAGAAATAAAAAATCCG
CAAAAAAGGCCAATTTTATTACCAGGAAAATTATGTCTCACGGTATCCTT
TTAGTACTATAAATAAGGGATTTTTTTGTGTATTTGATATTAACAATGTC
AACATCTTGtacattttaaaagattttctttttattccaataaaaaatgt
tttaatgacAGAAAAGAAAATATCTGGGAATCAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032647XLOC_032647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051514-exon-scaffold_202-1491911889:739621..739899TCONS_00051514-exon-scaffold_202-1491911889:739621..739899Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:739621..739899TCONS_00051514-exon-scaffold_202-1510915933:739621..739899Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:739621..739899TCONS_00051514-exon-scaffold_202-1575043694:739621..739899Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:740196..740266TCONS_00051514-exon-scaffold_202-1491911889:740196..740266Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:740196..740266TCONS_00051514-exon-scaffold_202-1510915933:740196..740266Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:740196..740266TCONS_00051514-exon-scaffold_202-1575043694:740196..740266Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:740454..740561TCONS_00051514-exon-scaffold_202-1491911889:740454..740561Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:740454..740561TCONS_00051514-exon-scaffold_202-1510915933:740454..740561Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:740454..740561TCONS_00051514-exon-scaffold_202-1575043694:740454..740561Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:741393..741480TCONS_00051514-exon-scaffold_202-1491911889:741393..741480Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:741393..741480TCONS_00051514-exon-scaffold_202-1510915933:741393..741480Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:741393..741480TCONS_00051514-exon-scaffold_202-1575043694:741393..741480Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:743097..743170TCONS_00051514-exon-scaffold_202-1491911889:743097..743170Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:743097..743170TCONS_00051514-exon-scaffold_202-1510915933:743097..743170Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:743097..743170TCONS_00051514-exon-scaffold_202-1575043694:743097..743170Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:743549..743642TCONS_00051514-exon-scaffold_202-1491911889:743549..743642Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:743549..743642TCONS_00051514-exon-scaffold_202-1510915933:743549..743642Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:743549..743642TCONS_00051514-exon-scaffold_202-1575043694:743549..743642Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:743954..744144TCONS_00051514-exon-scaffold_202-1491911889:743954..744144Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:743954..744144TCONS_00051514-exon-scaffold_202-1510915933:743954..744144Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:743954..744144TCONS_00051514-exon-scaffold_202-1575043694:743954..744144Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:744197..744235TCONS_00051514-exon-scaffold_202-1491911889:744197..744235Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:744197..744235TCONS_00051514-exon-scaffold_202-1510915933:744197..744235Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:744197..744235TCONS_00051514-exon-scaffold_202-1575043694:744197..744235Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:745080..745215TCONS_00051514-exon-scaffold_202-1491911889:745080..745215Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:745080..745215TCONS_00051514-exon-scaffold_202-1510915933:745080..745215Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:745080..745215TCONS_00051514-exon-scaffold_202-1575043694:745080..745215Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:745778..745931TCONS_00051514-exon-scaffold_202-1491911889:745778..745931Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:745778..745931TCONS_00051514-exon-scaffold_202-1510915933:745778..745931Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:745778..745931TCONS_00051514-exon-scaffold_202-1575043694:745778..745931Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1491911889:748843..749858TCONS_00051514-exon-scaffold_202-1491911889:748843..749858Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1510915933:748843..749858TCONS_00051514-exon-scaffold_202-1510915933:748843..749858Clytia hemisphaericaexon
TCONS_00051514-exon-scaffold_202-1575043694:748843..749858TCONS_00051514-exon-scaffold_202-1575043694:748843..749858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:739621..749858 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.8439	18.6793	76.1156	80.2721	209.068	158.771	179.508	193.747	27.6835	36.2543	57.9916	38.2513	64.2677	66.2418	41.6675	46.806	68.2575	57.4171	26.7518	8.72418	42.5483	32.5894	27.4341	32.7338	54.7298	55.9189	29.7235	16.5086	21.9176	24.148
Blast
[Close]
BLAST of TCONS_00051514 vs. Swiss-Prot (Human)
Match: SRSF6 (Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.566e-39
Identity = 80/181 (44.20%), Postives = 121/181 (66.85%), Query Frame = 1 
Query:  166 RLYVGKLPRDIRERDVEKEFRRYGRVKDISMKGNYCFIQYESSRDASDAVHDLHGRMLWGERMSVEHARTPKEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRSDYRILVKNLSTRCDFHDLKEVFGKAGSVLFADAHKKRVGEGLVEFDSRKDMERALKKLNGLEINGKPIQL 708
            R+Y+G+L  ++RE+D+++ F  YGR+ ++ +K  Y F+++E SRDA DAV++L+G+ L GER+ VEHAR P+         G        G    S R S   +   P+R++YR++V+NLS+RC + DLK+   +AG V +ADAHK+R  EG++EF S  DM+RAL KL+G EING+ I+L
Sbjct:    3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRR-----DRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRL 178
The following BLAST results are available for this feature:
BLAST of TCONS_00051514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF61.566e-3944.20Serine/arginine-rich splicing factor 6 OS=Homo sap... [more]
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