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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051499 ID=TCONS_00051499|Name=TCONS_00051499|organism=Clytia hemisphaerica|type=transcript|length=1299bp
ATTATCAACAAGATGAGAAACTTTGTCCTGTTTCTGACTTTtgtttttat
gacattttcaaataaagGCTTCATGGAAACTTTTTAACGCCTGGCAATTT
CATATGAAAGGTTGTACACCGAAGACTCAATGCAACAGTGACAAACTTTG
TGGTTCAGCTGAGAGAGATTGTTTGtACAAATGCTGTGAAACAGACAGCT
GCAATGGCTCGATGATGATCATTTATTCAAAATGGTTGATGTCTTTCACA
TTTCTAATTGTTTTCATTGTCATTATTTGGTAATGAATTTATTGTAGGAC
ACACATTTATTGTAGGATACAAAATCCACCCCATAAAATCACTCATCTCA
CTAGATTCTGATTTCACACACCCTTCTCAAAGCCCGATGCAAACCCTTCC
CACTAGAAAAGTTaaccaaaatatcgtcctcgccgaaaaattttccttaa
atttttgtccccactggaaataatcaaataaaccaatcctcactgcaaaa
tacttACTATTTTTCTCATCCCCactcaattttctgacttgaaaacaaaa
gaattgaaatccatggtcataaaaaatatgagaacatcaatccccatcga
gtttcagtcatttatttttatccccacaaatcctaccgggtctgtgagaa
ggggttgtgATTTCCAGATAAGGTCGTATAGTATTTCCGAATAGAATTTT
TGCAGCAAAAAGATCAACCGTTCTAATCTCTTTTCTTATGCAATCCTAGC
TGAATTTAAGAAAGTTCCTGAAGTTCCCGTATTCCCACTTGTgagtttta
aaaacaatctTGCATCCAAGCgatatttcagatttttaaatccTGCCTGG
TTTTCAGAAACACGGATAAGAGATGTATTTGTGTTCATGTGAATTTGGTT
TTCGTcgggattttttttttatattgatcaTATTTTCATCGATATTTTAG
ACATATTGCATTGTTGTGAAAATAGTGTTTTTAGGGAAGTTATATATGGC
ATGGTTTTGTCCAGCTTAGAAGCAGCTTCGTTAAAACGTGTTTGTTCAAT
GTTAGAAGTTTGGATGCATATTCTGGTTGTTGTGTGGTCCTGGTTGCCTT
TTGGGTGCGACACATATTaacaaatattttgtaaaaatacaatatttatT
TCACCCGCCTACAGTGCAATCggttaatattttttttgtcgAGAGTCTAT
ATATTANCTGCCTTTTGGGTGCGACACATATCaacaaatattttgtaaaa
atacaaTATTCATTTCACCCGCCTACAGTGCAATcggttaatatttttt Run BLAST on NCBI transcript from alignment at scaffold_202:317587..321297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051499 ID=TCONS_00051499|Name=TCONS_00051499|organism=Clytia hemisphaerica|type=transcript|length=3711bp|location=Sequence derived from alignment at scaffold_202:317587..321297+ (Clytia hemisphaerica)
ATTATCAACAAGATGAGAAACTTTGTCCTGTTTCTGACTTTtgtttttat
gacattttcaaataaaggtAAGATTTACTTTCTTAAATACTTTGATCGAA
TACATTACTCGTTAGATATTTATATTGTCTCTATCATATTAAAACCCCAA
TGTTGCTACATAAGACACCATATAGCCAACTTTTGTGCAATTTGTTATAA
TTGTGAAATTTATGAACTGAGCAAAACAGGTAAAGTTTTGATAGTGATTT
TTAAACTCAACACAAACAAATAACCTGGTACTTCGATTACTTCTTCCTTG
AAGCGCCTCGTCGAATAATGNGTAACCTGTTACTTCGATTACTTCTTCCT
TGAAGCTCCTCGTCGAATAATGCCCCTCCTTTAGAGAAGATTTTCAACGG
GTatttattcgaagtaatgcggtgactcaaaattaatgaaatttcttctc
CACAGTTGATGGTTTACGTTGCCAACAATGCTACAGTCAGAAATCAATGA
CCACCTGCTCAAGTCAACAATATGAAGCACACTGCGATGTCTCTGAAATG
TGTTTTCAGGTAAAACTCCTAACTGTTTCTTTATATTTAATCTTTAGTAG
TCTGTAGCGTGGTGGTAAGTTTTAGCCATTAAGAGGAAATATATCCAAAA
GTATCGTACTCACTTCGctcacataatttttttttcaaaactatttctcT
TGATAGGGGGGCACCAAAATATTCGATGCCCAAATTTTTGTCGACCTACC
TAGTCTGAAGTGAaacgcagacctctatagatatatttcctataagaaac
tcttttcgctagaggatgaacAGAAGTCTACGACCTACCATGCTACGCTA
AAAAAAACACGTTAATTGAAGAAGTATGTCCAAAAATGTCAACAGTTATA
GCTCGAAAATAAAACTCATTTCCAGTCAAAATTCTGTTTTAGAAAACTTA
GACCAAAAGCTTTTGAAAACtgcaaaaaccttttttttgaaactcGTCAT
AGATCCGCCAACGAGGGTTAGATGTCTCAAATTTTTAGTAGAATTATGTA
AAagaaattgggcttttccagaaaaaaaccgtataccccctgttgaggag
gtccatttccgttccaagggggtaaggtttgatatgtggcagAATTTCAT
AGgaagatacaaaaatctgtcaaaaataactggaattccatgggggtaac
CTTTTAAATcttactaaaattcagaattccagaggggtttaagcctgaaa
ttagctggaattccaggggggttacagcatttcagccacaaaatgatgga
cctcctcaacacggggttacggtttttttctggaaaagcccatgcTAATC
TGACAAAAAATGAGGTGCGAAAAAGGTTATCATCTTCCGTTAAATTATTA
CATTTCATataatattttatcataatttttagGCTTCATGGAAACTTTTT
AACGCCTGGCAATTTCATATGAAAGGTTGTACACCGAAGACTCAATGCAA
CAGTGACAAACTTTGTGGTTCAGCTGAGAGAGATTGTTTGGTAAGATATT
TAACGCCCCTGAATAACAGCCCCTGTGGAAATTCTTTCTTCAACTGGGAT
AAATtcttattgaaatcccaatgggaatagaaattctattgatccaaggt
taaaaatccagtgggatggttttgagttcaatttctaaacatggaatttc
gaatggggatgaaatcaaagtcaatttcccagtggggctgaaataaTTAC
AGGGCTTTTTcacaccggggacgaaatttttgtcaaacttTCCAGTGACG
GTGGggtctcagtgggtctgtgacacaggggtgttatttaCATTCTTGAT
TGAAAGAGTTGAATTGAGTAACTGGATGCACATTCTGAAGAGAAAATAAT
CTTGTTTGGTTTTCTCAGACCTAGACAATCTCATTCGTGGTCATAATTAG
CTGATTTTCAAGAGCAGTCCAGCTCCACTCTGTGCTTTGATTGAAATGTC
TAATTAACATATAGGCCCCGGGTATAACCACAAGATAGAGTACTATAGGA
CATTCTATTTAGGCCACGTAAAACTACAATAGAATTTCACCGCTTGACTA
ATTAGTTGACTTTgtggattttcgaaaacaatagcaacaataccTTTTGT
GATATTCCCTTTTTTGCTCGGAGAAGCTTAAAACATTCCCTCTAGCCTTA
GCCcccgggctttacagaaatctattAGTATAACATTAAATGAACGCTGA
AACAGACACCCCTTTCTCAATGCCCCGATGGAACTTTTTTGTTGGGAtat
taactttttcaaaatccCGATGGAGATCAATAGTTTCAAGAGTGGATgca
atattttttctctttaatttcCGATGGGATAATATTGATATGTCACTTTC
CCACTGTGGTTAATTTCTTCcgattttttggtcaatttttagtGGGCTGA
GGGCTCCAGCGGGTGTGTGACACGGGGGTGTAAATAACTTAGTTTTCAAT
TGCGAAGACTGCTAAAAGATGACCCAGTTAGTATTTTATAGGCATTCTGC
CCATCtaacaattttcaatttcattttttctttctagtACAAATGCTGTG
AAACAGACAGCTGCAATGGCTCGATGATGATCATTTATTCAAAATGGTTG
ATGTCTTTCACATTTCTAATTGTTTTCATTGTCATTATTTGGTAATGAAT
TTATTGTAGGACACACATTTATTGTAGGATACAAAATCCACCCCATAAAA
TCACTCATCTCACTAGATTCTGATTTCACACACCCTTCTCAAAGCCCGAT
GCAAACCCTTCCCACTAGAAAAGTTaaccaaaatatcgtcctcgccgaaa
aattttccttaaatttttgtccccactggaaataatcaaataaaccaatc
ctcactgcaaaatacttACTATTTTTCTCATCCCCactcaattttctgac
ttgaaaacaaaagaattgaaatccatggtcataaaaaatatgagaacatc
aatccccatcgagtttcagtcatttatttttatccccacaaatcctaccg
ggtctgtgagaaggggttgtgATTTCCAGATAAGGTCGTATAGTATTTCC
GAATAGAATTTTTGCAGCAAAAAGATCAACCGTTCTAATCTCTTTTCTTA
TGCAATCCTAGCTGAATTTAAGAAAGTTCCTGAAGTTCCCGTATTCCCAC
TTGTgagttttaaaaacaatctTGCATCCAAGCgatatttcagattttta
aatccTGCCTGGTTTTCAGAAACACGGATAAGAGATGTATTTGTGTTCAT
GTGAATTTGGTTTTCGTcgggattttttttttatattgatcaTATTTTCA
TCGATATTTTAGACATATTGCATTGTTGTGAAAATAGTGTTTTTAGGGAA
GTTATATATGGCATGGTTTTGTCCAGCTTAGAAGCAGCTTCGTTAAAACG
TGTTTGTTCAATGTTAGAAGTTTGGATGCATATTCTGGTTGTTGTGTGGT
CCTGGTTGCCTTTTGGGTGCGACACATATTaacaaatattttgtaaaaat
acaatatttatTTCACCCGCCTACAGTGCAATCggttaatattttttttg
tcgAGAGTCTATATATTANCTGCCTTTTGGGTGCGACACATATCaacaaa
tattttgtaaaaatacaaTATTCATTTCACCCGCCTACAGTGCAATcggt
taatatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051499-exon-scaffold_202-1491911889:317587..317653 | TCONS_00051499-exon-scaffold_202-1491911889:317587..317653 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1510915933:317587..317653 | TCONS_00051499-exon-scaffold_202-1510915933:317587..317653 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1575043694:317587..317653 | TCONS_00051499-exon-scaffold_202-1575043694:317587..317653 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1491911889:319019..319126 | TCONS_00051499-exon-scaffold_202-1491911889:319019..319126 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1510915933:319019..319126 | TCONS_00051499-exon-scaffold_202-1510915933:319019..319126 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1575043694:319019..319126 | TCONS_00051499-exon-scaffold_202-1575043694:319019..319126 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1491911889:320174..321297 | TCONS_00051499-exon-scaffold_202-1491911889:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1510915933:320174..321297 | TCONS_00051499-exon-scaffold_202-1510915933:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051499-exon-scaffold_202-1575043694:320174..321297 | TCONS_00051499-exon-scaffold_202-1575043694:320174..321297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:317587..321297 + |
Blast
The following BLAST results are available for this feature:
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