XLOC_032640 (gene) - C. hemisphaerica

Overview
NameXLOC_032640
Unique NameXLOC_032640
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_202:312424..321297+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_032640 ID=XLOC_032640|Name=XLOC_032640|organism=Clytia hemisphaerica|type=gene|length=8874bp|location=Sequence derived from alignment at scaffold_202:312424..321297+ (Clytia hemisphaerica)
TTCTTTCTGAGTTTTAAAACTGTtgacaaagatgaaaaattttgtCCTGT
TTCTGGCATTTGTTTTCAtgacattttcaaataaaggtaagattaatttt
aaatgaatatctaaaataatttGATCAAACCATCACTGGTTAGATATCTA
TATTGTCTCCCCAATGTTGCTGCATTAGACATCATTCGACCCAATCTCGT
ACCCAAAGCCATTTGTAGTTTTTGTCCGACCCAACTTCCATGTAGTGCAA
TGATCGTTAAGTGTATTTTCCCCCAATCTCAAAGCCATGTGTTATTTGTT
ATGATTGTGCAATTTACCGTACTTACCGTACAACGACCCAATATTTCCCT
TAACAATCAAGAGCGCCAAAATCGCCAAAAAGTGACTATCACAGCACTAT
ccgaatttttgcgattttggcgcTTTTCGATTGTTCAGTGAACTATTGGT
TTGTTATACAATAGGTAAGTACATTTTAAACAGTATGAACTGAACAAAAC
ATGGAATCAAAAGGGTTTAATGTTTTGGTAGTGCTTTAAACCCACCACAA
ACAAATTACCGTGTTACTTCAAGTGAACATCTCCTTCCTTTAAACGCCTC
GTAAAACGCCTCGTAAAACGCCCCTCCTTTAGGGAAAATCTTCAATGGGT
GCTTATGCGAAGGAATACGGTAATTCAAGGTTAATGAATTTCTCCTCCAT
AGTTGATGGTTTGCGTTGCCAACAATGTTTCAGTCAGAAATCAATGACCA
CCTGTTCAAGTCAACAATATGAAGCACCTTGTGATGTCTCTGAAATGTGT
TTTCAGGTTAAATTCTTACTTAACTTTTTGTAGTCAGCAGATATCATCAG
tcataaagaggaaaaatatctaaaaatatttctacTCGCTTTGCTCACAT
AATagttccaaaaatattttcctttaaagGGGACACCAAAAAAAATAACC
AATTTGGGAAAATTGGCTCATCAAATTGCCCCAATTTCGATCAAACCACT
ACGCTACCAACACGTAGAAATGAATAAATATGTCCAAGAATTGTCCCCCT
ACTAATTATAGCTTATGAAACGTAAAGTCATTTCCAACCGAAATTCCGTT
gttgtttaaaaaaacttagaCGTAGAGCTCTTGAAAACTGcgggaaaaac
ctttttttctgaAACTCTTTTTAAACCCACCATCAAGGTTTGACGTCTCA
AATTTTTAGAAGAATTATGCAAAAAGAAATTGctgatttgacaaaaaatg
aggcgccgcaaaatttaagtttaaattGTTATCTTCCGTTAAATCATTAC
ATTTCATATAATGTTCTATCataattttaaggcttcatggAAACTTTTTA
ACGCCTGGCAATTTCATATGAAAGGTTGCACACCGAAAACTCAATGCAAC
AGTGATAAACTATGTGGTTCAGCTGAAAGAGATTGTTTGGTAAGATATTC
ACATTCTTGGTTGTAAGAGTTGAATAGAGTGACCTCTGAAGAGAAGATAA
TCTTGTTTTGTTTCACAGACTTGAACAATCTCATTCGTGGTCATAATTAG
CTGATTTTCAAGAGCCATCTAACTCCAGTCTGTTTCAAACTGTCTAAtca
cagtgccgtagcaactgggggagcaagggggggctatgccccccccccaa
taattttttcaaaaatggttattttgaaaagtgcaaagtttttcctttct
aatttgtcataattgtctttatgtgcatgttttgagtgtatttttaagca
atctagagctcaaattttcaaaatttcccccctctggccaaaccatggtt
ggccctcgcggtgtcactaaacttcagcccccccaatatgaaaatgcttc
ctacggcactgaatcAACATATACCCCCGGTATAACCACAAGtctataaa
gcccgaagagATAGATAAagtatttttgctgaaaaatgagCCTCAGTGGG
AATGACAACTTTATCAAAATACCGATGGGGATCAATTGTTTCAAGAGTGG
ATACACTGTTATGTCTATTTTCTATTTAATTTCCGATGGGAATAAAGCAA
TAGAACACTTCCCAGTAGGGTTAATTTAATCCACCAGGAAAGATTATTTG
GTCATTTTTTTCAGTGGGGTATGTGACACGGGGATGTAGACAACGTAATT
TTTAGTTGCGAAGACTGCTGCGAAAGATGATCCAGTCAGTATTTAATAGA
GATCTGTGCatataacaattttatttttttctttctagtaCAAATGCTGT
GAAACAGACAGCTGCAATGGCTCGATGTGACgataaaataatttattttt
gatttatttttgatttatgatttatttatgatttatttttgatttatttt
tgatttatctctacagtatgtggcccccaaaacgtcgatcaaatttgaaa
tttctctcaaatctagaaggaaaagaggttttacaattttttttNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCTtttaatggcccccaaaacggaggtttg
caattttagcgatttctcgagatatctttaagatatgaatacaaaatttt
gaccatagttttgaaatgcgatttagagggttttgggcataaattttttt
ggtaaaatttttacagtatacccctggttgtcaaaacggaggtttggggc
ccccaaaacgtaggtgtagttaaaatcaaattattaagcccagtgNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgtttttcaaaatcaaccaaacagtctctttttgttct
tataaagttataaattgatcttttttgcttccaatgatggtacatcaaag
aaaagccgctttgagtagatttataaaagatttcaacgaccatttagatc
attaccgagacgttttctctccatctatatctttattacctccatgctcA
AACTTTGAGTCAAAGAGACTCTACATACTCAAGTTTCCCACTTTAATGTT
TTTCATCCATTTCTGGGATATAAACATTGTTCGAACCAAAGGTCATTACC
GTCATCACATTCGTTAAATGCCGTTATTATAACATCAGAAGTATGATGTG
CTGAGCTCAGAAACCCTTATGAGGATTATGGTATGGAGAGTACAAGTACA
GCAACCAACACACCCCTATCATTAAAAGgataattttgcaaaaaaaaaca
tttcaaatttttcaaaattttgctgtcgtcagcagaaatcagcaaaatac
gaaatcttgcaaaaaagtgttgatgtcagcaaaatttcaaacattttttt
tcttcaaaatgatccttttaatgatgtgcaactttagttcaattttcgtg
tttttacCTTTAGCCAAACttgagttattcaaaaaacaagttttgctgac
gtcagcaatttttagtttttgcggtttttcgcgaaaatgaggGCGTGAAC
AATTAGGTATCCTTCGTAGTAAATCATTTGTTTGCTCATTTTCTGCTGGC
TAATGGTcttcaaaaattatcgtaattttcaggtttttgagacatgccat
aacttaccgaGTTGTCTAAACTATCTGCACCGTGCAGGTACCCTGAGTGT
CAAACTTGGTTTTCTTTGAGATACAAAGCATATAGATTTTTTCGCGCTGA
CCTTTCAGCAAAAATACACGGATGTTCCGATGTTCTTAACACCGACCAAA
ACACGCTCTAAAACGACTTTCTTCTGCGTTCATTAGGTTTATAGCGTAGA
TTTTTTGCGTCCAACCAATGGGAAGAAGGAAGAAGTCATAAGAGTCATTC
ACGATTACCCATGATTCTTTTGAACTTTGAAATGTCTTGCAACACCGAAA
TGCCAAaacattattttcaagcacCTAAAACACTGGGTATCAATCATATT
AAAAGAACTTATCATGACATTTTAGGACTTACATAAATAAGGGGCATGTC
ATGCCCATGAAGCTTGCTCGTTTTAAGATATGACTTATATacgaataaga
atttttatcaaaacgaAGGATCAAAGGAGAAACCACAAAACAAAATGCTT
GCTATCAAGAACAAAAATTTCGATGATGGTGTGATTTACATTTTATTTCG
ACTGAGTTTTACCATTATCAACAAGATGAGAAACTTTGTCCTGTTTCTGA
CTTTtgtttttatgacattttcaaataaaggtAAGATTTACTTTCTTAAA
TACTTTGATCGAATACATTACTCGTTAGATATTTATATTGTCTCTATCAT
ATTAAAACCCCAATGTTGCTACATAAGACACCATATAGCCAACTTTTGTG
CAATTTGTTATAATTGTGAAATTTATGAACTGAGCAAAACAGGTAAAGTT
TTGATAGTGATTTTTAAACTCAACACAAACAAATAACCTGGTACTTCGAT
TACTTCTTCCTTGAAGCGCCTCGTCGAATAATGNGTAACCTGTTACTTCG
ATTACTTCTTCCTTGAAGCTCCTCGTCGAATAATGCCCCTCCTTTAGAGA
AGATTTTCAACGGGTatttattcgaagtaatgcggtgactcaaaattaat
gaaatttcttctcCACAGTTGATGGTTTACGTTGCCAACAATGCTACAGT
CAGAAATCAATGACCACCTGCTCAAGTCAACAATATGAAGCACACTGCGA
TGTCTCTGAAATGTGTTTTCAGGTAAAACTCCTAACTGTTTCTTTATATT
TAATCTTTAGTAGTCTGTAGCGTGGTGGTAAGTTTTAGCCATTAAGAGGA
AATATATCCAAAAGTATCGTACTCACTTCGctcacataatttttttttca
aaactatttctcTTGATAGGGGGGCACCAAAATATTCGATGCCCAAATTT
TTGTCGACCTACCTAGTCTGAAGTGAaacgcagacctctatagatatatt
tcctataagaaactcttttcgctagaggatgaacAGAAGTCTACGACCTA
CCATGCTACGCTAAAAAAAACACGTTAATTGAAGAAGTATGTCCAAAAAT
GTCAACAGTTATAGCTCGAAAATAAAACTCATTTCCAGTCAAAATTCTGT
TTTAGAAAACTTAGACCAAAAGCTTTTGAAAACtgcaaaaaccttttttt
tgaaactcGTCATAGATCCGCCAACGAGGGTTAGATGTCTCAAATTTTTA
GTAGAATTATGTAAAagaaattgggcttttccagaaaaaaaccgtatacc
ccctgttgaggaggtccatttccgttccaagggggtaaggtttgatatgt
ggcagAATTTCATAGgaagatacaaaaatctgtcaaaaataactggaatt
ccatgggggtaacCTTTTAAATcttactaaaattcagaattccagagggg
tttaagcctgaaattagctggaattccaggggggttacagcatttcagcc
acaaaatgatggacctcctcaacacggggttacggtttttttctggaaaa
gcccatgcTAATCTGACAAAAAATGAGGTGCGAAAAAGGTTATCATCTTC
CGTTAAATTATTACATTTCATataatattttatcataatttttagGCTTC
ATGGAAACTTTTTAACGCCTGGCAATTTCATATGAAAGGTTGTACACCGA
AGACTCAATGCAACAGTGACAAACTTTGTGGTTCAGCTGAGAGAGATTGT
TTGGTAAGATATTTAACGCCCCTGAATAACAGCCCCTGTGGAAATTCTTT
CTTCAACTGGGATAAATtcttattgaaatcccaatgggaatagaaattct
attgatccaaggttaaaaatccagtgggatggttttgagttcaatttcta
aacatggaatttcgaatggggatgaaatcaaagtcaatttcccagtgggg
ctgaaataaTTACAGGGCTTTTTcacaccggggacgaaatttttgtcaaa
cttTCCAGTGACGGTGGggtctcagtgggtctgtgacacaggggtgttat
ttaCATTCTTGATTGAAAGAGTTGAATTGAGTAACTGGATGCACATTCTG
AAGAGAAAATAATCTTGTTTGGTTTTCTCAGACCTAGACAATCTCATTCG
TGGTCATAATTAGCTGATTTTCAAGAGCAGTCCAGCTCCACTCTGTGCTT
TGATTGAAATGTCTAATTAACATATAGGCCCCGGGTATAACCACAAGATA
GAGTACTATAGGACATTCTATTTAGGCCACGTAAAACTACAATAGAATTT
CACCGCTTGACTAATTAGTTGACTTTgtggattttcgaaaacaatagcaa
caataccTTTTGTGATATTCCCTTTTTTGCTCGGAGAAGCTTAAAACATT
CCCTCTAGCCTTAGCCcccgggctttacagaaatctattAGTATAACATT
AAATGAACGCTGAAACAGACACCCCTTTCTCAATGCCCCGATGGAACTTT
TTTGTTGGGAtattaactttttcaaaatccCGATGGAGATCAATAGTTTC
AAGAGTGGATgcaatattttttctctttaatttcCGATGGGATAATATTG
ATATGTCACTTTCCCACTGTGGTTAATTTCTTCcgattttttggtcaatt
tttagtGGGCTGAGGGCTCCAGCGGGTGTGTGACACGGGGGTGTAAATAA
CTTAGTTTTCAATTGCGAAGACTGCTAAAAGATGACCCAGTTAGTATTTT
ATAGGCATTCTGCCCATCtaacaattttcaatttcattttttctttctag
tACAAATGCTGTGAAACAGACAGCTGCAATGGCTCGATGATGATCATTTA
TTCAAAATGGTTGATGTCTTTCACATTTCTAATTGTTTTCATTGTCATTA
TTTGGTAATGAATTTATTGTAGGACACACATTTATTGTAGGATACAAAAT
CCACCCCATAAAATCACTCATCTCACTAGATTCTGATTTCACACACCCTT
CTCAAAGCCCGATGCAAACCCTTCCCACTAGAAAAGTTaaccaaaatatc
gtcctcgccgaaaaattttccttaaatttttgtccccactggaaataatc
aaataaaccaatcctcactgcaaaatacttACTATTTTTCTCATCCCCac
tcaattttctgacttgaaaacaaaagaattgaaatccatggtcataaaaa
atatgagaacatcaatccccatcgagtttcagtcatttatttttatcccc
acaaatcctaccgggtctgtgagaaggggttgtgATTTCCAGATAAGGTC
GTATAGTATTTCCGAATAGAATTTTTGCAGCAAAAAGATCAACCGTTCTA
ATCTCTTTTCTTATGCAATCCTAGCTGAATTTAAGAAAGTTCCTGAAGTT
CCCGTATTCCCACTTGTgagttttaaaaacaatctTGCATCCAAGCgata
tttcagatttttaaatccTGCCTGGTTTTCAGAAACACGGATAAGAGATG
TATTTGTGTTCATGTGAATTTGGTTTTCGTcgggattttttttttatatt
gatcaTATTTTCATCGATATTTTAGACATATTGCATTGTTGTGAAAATAG
TGTTTTTAGGGAAGTTATATATGGCATGGTTTTGTCCAGCTTAGAAGCAG
CTTCGTTAAAACGTGTTTGTTCAATGTTAGAAGTTTGGATGCATATTCTG
GTTGTTGTGTGGTCCTGGTTGCCTTTTGGGTGCGACACATATTaacaaat
attttgtaaaaatacaatatttatTTCACCCGCCTACAGTGCAATCggtt
aatattttttttgtcgAGAGTCTATATATTANCTGCCTTTTGGGTGCGAC
ACATATCaacaaatattttgtaaaaatacaaTATTCATTTCACCCGCCTA
CAGTGCAATcggttaatatttttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00051491TCONS_00051491Clytia hemisphaericatranscript
TCONS_00051492TCONS_00051492Clytia hemisphaericatranscript
TCONS_00051493TCONS_00051493Clytia hemisphaericatranscript
TCONS_00051494TCONS_00051494Clytia hemisphaericatranscript
TCONS_00051495TCONS_00051495Clytia hemisphaericatranscript
TCONS_00051496TCONS_00051496Clytia hemisphaericatranscript
TCONS_00051497TCONS_00051497Clytia hemisphaericatranscript
TCONS_00051498TCONS_00051498Clytia hemisphaericatranscript
TCONS_00051499TCONS_00051499Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00051494-proteinTCONS_00051494-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:312424..321297 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97	1.48	1.46	1.74	4.02	3.56	4.18	4.09	2.54	3.52	4.83	4.31	7.78	7.61	6.46	7.9	19.7	28.42	10.86	6.02	49.42	51.26	8.77	12.46	18.93	10.98	3.51	3.53	6.05	5.57