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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051496 ID=TCONS_00051496|Name=TCONS_00051496|organism=Clytia hemisphaerica|type=transcript|length=1351bp
cattttcaaataaagTTGATGGTTTGCGTTGCCAACAATGTTTCAGTCAG
AAATCAATGACCACCTGTTCAAGTCAACAATATGAAGCACCTTGTGATGT
CTCTGAAATGTGTTTTCAGGCTTCATGGAAACTTTTTAACGCCTGGCAAT
TTCATATGAAAGGTTGTACACCGAAGACTCAATGCAACAGTGACAAACTT
TGTGGTTCAGCTGAGAGAGATTGTTTGtACAAATGCTGTGAAACAGACAG
CTGCAATGGCTCGATGATGATCATTTATTCAAAATGGTTGATGTCTTTCA
CATTTCTAATTGTTTTCATTGTCATTATTTGGTAATGAATTTATTGTAGG
ACACACATTTATTGTAGGATACAAAATCCACCCCATAAAATCACTCATCT
CACTAGATTCTGATTTCACACACCCTTCTCAAAGCCCGATGCAAACCCTT
CCCACTAGAAAAGTTaaccaaaatatcgtcctcgccgaaaaattttcctt
aaatttttgtccccactggaaataatcaaataaaccaatcctcactgcaa
aatacttACTATTTTTCTCATCCCCactcaattttctgacttgaaaacaa
aagaattgaaatccatggtcataaaaaatatgagaacatcaatccccatc
gagtttcagtcatttatttttatccccacaaatcctaccgggtctgtgag
aaggggttgtgATTTCCAGATAAGGTCGTATAGTATTTCCGAATAGAATT
TTTGCAGCAAAAAGATCAACCGTTCTAATCTCTTTTCTTATGCAATCCTA
GCTGAATTTAAGAAAGTTCCTGAAGTTCCCGTATTCCCACTTGTgagttt
taaaaacaatctTGCATCCAAGCgatatttcagatttttaaatccTGCCT
GGTTTTCAGAAACACGGATAAGAGATGTATTTGTGTTCATGTGAATTTGG
TTTTCGTcgggattttttttttatattgatcaTATTTTCATCGATATTTT
AGACATATTGCATTGTTGTGAAAATAGTGTTTTTAGGGAAGTTATATATG
GCATGGTTTTGTCCAGCTTAGAAGCAGCTTCGTTAAAACGTGTTTGTTCA
ATGTTAGAAGTTTGGATGCATATTCTGGTTGTTGTGTGGTCCTGGTTGCC
TTTTGGGTGCGACACATATTaacaaatattttgtaaaaatacaatattta
tTTCACCCGCCTACAGTGCAATCggttaatattttttttgtcgAGAGTCT
ATATATTANCTGCCTTTTGGGTGCGACACATATCaacaaatattttgtaa
aaatacaaTATTCATTTCACCCGCCTACAGTGCAATcggttaatattttt
t Run BLAST on NCBI transcript from alignment at scaffold_202:312495..321297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051496 ID=TCONS_00051496|Name=TCONS_00051496|organism=Clytia hemisphaerica|type=transcript|length=8803bp|location=Sequence derived from alignment at scaffold_202:312495..321297+ (Clytia hemisphaerica)
cattttcaaataaaggtaagattaattttaaatgaatatctaaaataatt
tGATCAAACCATCACTGGTTAGATATCTATATTGTCTCCCCAATGTTGCT
GCATTAGACATCATTCGACCCAATCTCGTACCCAAAGCCATTTGTAGTTT
TTGTCCGACCCAACTTCCATGTAGTGCAATGATCGTTAAGTGTATTTTCC
CCCAATCTCAAAGCCATGTGTTATTTGTTATGATTGTGCAATTTACCGTA
CTTACCGTACAACGACCCAATATTTCCCTTAACAATCAAGAGCGCCAAAA
TCGCCAAAAAGTGACTATCACAGCACTATccgaatttttgcgattttggc
gcTTTTCGATTGTTCAGTGAACTATTGGTTTGTTATACAATAGGTAAGTA
CATTTTAAACAGTATGAACTGAACAAAACATGGAATCAAAAGGGTTTAAT
GTTTTGGTAGTGCTTTAAACCCACCACAAACAAATTACCGTGTTACTTCA
AGTGAACATCTCCTTCCTTTAAACGCCTCGTAAAACGCCTCGTAAAACGC
CCCTCCTTTAGGGAAAATCTTCAATGGGTGCTTATGCGAAGGAATACGGT
AATTCAAGGTTAATGAATTTCTCCTCCATAGTTGATGGTTTGCGTTGCCA
ACAATGTTTCAGTCAGAAATCAATGACCACCTGTTCAAGTCAACAATATG
AAGCACCTTGTGATGTCTCTGAAATGTGTTTTCAGGTTAAATTCTTACTT
AACTTTTTGTAGTCAGCAGATATCATCAGtcataaagaggaaaaatatct
aaaaatatttctacTCGCTTTGCTCACATAATagttccaaaaatattttc
ctttaaagGGGACACCAAAAAAAATAACCAATTTGGGAAAATTGGCTCAT
CAAATTGCCCCAATTTCGATCAAACCACTACGCTACCAACACGTAGAAAT
GAATAAATATGTCCAAGAATTGTCCCCCTACTAATTATAGCTTATGAAAC
GTAAAGTCATTTCCAACCGAAATTCCGTTgttgtttaaaaaaacttagaC
GTAGAGCTCTTGAAAACTGcgggaaaaacctttttttctgaAACTCTTTT
TAAACCCACCATCAAGGTTTGACGTCTCAAATTTTTAGAAGAATTATGCA
AAAAGAAATTGctgatttgacaaaaaatgaggcgccgcaaaatttaagtt
taaattGTTATCTTCCGTTAAATCATTACATTTCATATAATGTTCTATCa
taattttaaggcttcatggAAACTTTTTAACGCCTGGCAATTTCATATGA
AAGGTTGCACACCGAAAACTCAATGCAACAGTGATAAACTATGTGGTTCA
GCTGAAAGAGATTGTTTGGTAAGATATTCACATTCTTGGTTGTAAGAGTT
GAATAGAGTGACCTCTGAAGAGAAGATAATCTTGTTTTGTTTCACAGACT
TGAACAATCTCATTCGTGGTCATAATTAGCTGATTTTCAAGAGCCATCTA
ACTCCAGTCTGTTTCAAACTGTCTAAtcacagtgccgtagcaactggggg
agcaagggggggctatgccccccccccaataattttttcaaaaatggtta
ttttgaaaagtgcaaagtttttcctttctaatttgtcataattgtcttta
tgtgcatgttttgagtgtatttttaagcaatctagagctcaaattttcaa
aatttcccccctctggccaaaccatggttggccctcgcggtgtcactaaa
cttcagcccccccaatatgaaaatgcttcctacggcactgaatcAACATA
TACCCCCGGTATAACCACAAGtctataaagcccgaagagATAGATAAagt
atttttgctgaaaaatgagCCTCAGTGGGAATGACAACTTTATCAAAATA
CCGATGGGGATCAATTGTTTCAAGAGTGGATACACTGTTATGTCTATTTT
CTATTTAATTTCCGATGGGAATAAAGCAATAGAACACTTCCCAGTAGGGT
TAATTTAATCCACCAGGAAAGATTATTTGGTCATTTTTTTCAGTGGGGTA
TGTGACACGGGGATGTAGACAACGTAATTTTTAGTTGCGAAGACTGCTGC
GAAAGATGATCCAGTCAGTATTTAATAGAGATCTGTGCatataacaattt
tatttttttctttctagtaCAAATGCTGTGAAACAGACAGCTGCAATGGC
TCGATGTGACgataaaataatttatttttgatttatttttgatttatgat
ttatttatgatttatttttgatttatttttgatttatctctacagtatgt
ggcccccaaaacgtcgatcaaatttgaaatttctctcaaatctagaagga
aaagaggttttacaattttttttNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
CTtttaatggcccccaaaacggaggtttgcaattttagcgatttctcgag
atatctttaagatatgaatacaaaattttgaccatagttttgaaatgcga
tttagagggttttgggcataaatttttttggtaaaatttttacagtatac
ccctggttgtcaaaacggaggtttggggcccccaaaacgtaggtgtagtt
aaaatcaaattattaagcccagtgNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtttttca
aaatcaaccaaacagtctctttttgttcttataaagttataaattgatct
tttttgcttccaatgatggtacatcaaagaaaagccgctttgagtagatt
tataaaagatttcaacgaccatttagatcattaccgagacgttttctctc
catctatatctttattacctccatgctcAAACTTTGAGTCAAAGAGACTC
TACATACTCAAGTTTCCCACTTTAATGTTTTTCATCCATTTCTGGGATAT
AAACATTGTTCGAACCAAAGGTCATTACCGTCATCACATTCGTTAAATGC
CGTTATTATAACATCAGAAGTATGATGTGCTGAGCTCAGAAACCCTTATG
AGGATTATGGTATGGAGAGTACAAGTACAGCAACCAACACACCCCTATCA
TTAAAAGgataattttgcaaaaaaaaacatttcaaatttttcaaaatttt
gctgtcgtcagcagaaatcagcaaaatacgaaatcttgcaaaaaagtgtt
gatgtcagcaaaatttcaaacattttttttcttcaaaatgatccttttaa
tgatgtgcaactttagttcaattttcgtgtttttacCTTTAGCCAAACtt
gagttattcaaaaaacaagttttgctgacgtcagcaatttttagtttttg
cggtttttcgcgaaaatgaggGCGTGAACAATTAGGTATCCTTCGTAGTA
AATCATTTGTTTGCTCATTTTCTGCTGGCTAATGGTcttcaaaaattatc
gtaattttcaggtttttgagacatgccataacttaccgaGTTGTCTAAAC
TATCTGCACCGTGCAGGTACCCTGAGTGTCAAACTTGGTTTTCTTTGAGA
TACAAAGCATATAGATTTTTTCGCGCTGACCTTTCAGCAAAAATACACGG
ATGTTCCGATGTTCTTAACACCGACCAAAACACGCTCTAAAACGACTTTC
TTCTGCGTTCATTAGGTTTATAGCGTAGATTTTTTGCGTCCAACCAATGG
GAAGAAGGAAGAAGTCATAAGAGTCATTCACGATTACCCATGATTCTTTT
GAACTTTGAAATGTCTTGCAACACCGAAATGCCAAaacattattttcaag
cacCTAAAACACTGGGTATCAATCATATTAAAAGAACTTATCATGACATT
TTAGGACTTACATAAATAAGGGGCATGTCATGCCCATGAAGCTTGCTCGT
TTTAAGATATGACTTATATacgaataagaatttttatcaaaacgaAGGAT
CAAAGGAGAAACCACAAAACAAAATGCTTGCTATCAAGAACAAAAATTTC
GATGATGGTGTGATTTACATTTTATTTCGACTGAGTTTTACCATTATCAA
CAAGATGAGAAACTTTGTCCTGTTTCTGACTTTtgtttttatgacatttt
caaataaaggtAAGATTTACTTTCTTAAATACTTTGATCGAATACATTAC
TCGTTAGATATTTATATTGTCTCTATCATATTAAAACCCCAATGTTGCTA
CATAAGACACCATATAGCCAACTTTTGTGCAATTTGTTATAATTGTGAAA
TTTATGAACTGAGCAAAACAGGTAAAGTTTTGATAGTGATTTTTAAACTC
AACACAAACAAATAACCTGGTACTTCGATTACTTCTTCCTTGAAGCGCCT
CGTCGAATAATGNGTAACCTGTTACTTCGATTACTTCTTCCTTGAAGCTC
CTCGTCGAATAATGCCCCTCCTTTAGAGAAGATTTTCAACGGGTatttat
tcgaagtaatgcggtgactcaaaattaatgaaatttcttctcCACAGTTG
ATGGTTTACGTTGCCAACAATGCTACAGTCAGAAATCAATGACCACCTGC
TCAAGTCAACAATATGAAGCACACTGCGATGTCTCTGAAATGTGTTTTCA
GGTAAAACTCCTAACTGTTTCTTTATATTTAATCTTTAGTAGTCTGTAGC
GTGGTGGTAAGTTTTAGCCATTAAGAGGAAATATATCCAAAAGTATCGTA
CTCACTTCGctcacataatttttttttcaaaactatttctcTTGATAGGG
GGGCACCAAAATATTCGATGCCCAAATTTTTGTCGACCTACCTAGTCTGA
AGTGAaacgcagacctctatagatatatttcctataagaaactcttttcg
ctagaggatgaacAGAAGTCTACGACCTACCATGCTACGCTAAAAAAAAC
ACGTTAATTGAAGAAGTATGTCCAAAAATGTCAACAGTTATAGCTCGAAA
ATAAAACTCATTTCCAGTCAAAATTCTGTTTTAGAAAACTTAGACCAAAA
GCTTTTGAAAACtgcaaaaaccttttttttgaaactcGTCATAGATCCGC
CAACGAGGGTTAGATGTCTCAAATTTTTAGTAGAATTATGTAAAagaaat
tgggcttttccagaaaaaaaccgtataccccctgttgaggaggtccattt
ccgttccaagggggtaaggtttgatatgtggcagAATTTCATAGgaagat
acaaaaatctgtcaaaaataactggaattccatgggggtaacCTTTTAAA
Tcttactaaaattcagaattccagaggggtttaagcctgaaattagctgg
aattccaggggggttacagcatttcagccacaaaatgatggacctcctca
acacggggttacggtttttttctggaaaagcccatgcTAATCTGACAAAA
AATGAGGTGCGAAAAAGGTTATCATCTTCCGTTAAATTATTACATTTCAT
ataatattttatcataatttttagGCTTCATGGAAACTTTTTAACGCCTG
GCAATTTCATATGAAAGGTTGTACACCGAAGACTCAATGCAACAGTGACA
AACTTTGTGGTTCAGCTGAGAGAGATTGTTTGGTAAGATATTTAACGCCC
CTGAATAACAGCCCCTGTGGAAATTCTTTCTTCAACTGGGATAAATtctt
attgaaatcccaatgggaatagaaattctattgatccaaggttaaaaatc
cagtgggatggttttgagttcaatttctaaacatggaatttcgaatgggg
atgaaatcaaagtcaatttcccagtggggctgaaataaTTACAGGGCTTT
TTcacaccggggacgaaatttttgtcaaacttTCCAGTGACGGTGGggtc
tcagtgggtctgtgacacaggggtgttatttaCATTCTTGATTGAAAGAG
TTGAATTGAGTAACTGGATGCACATTCTGAAGAGAAAATAATCTTGTTTG
GTTTTCTCAGACCTAGACAATCTCATTCGTGGTCATAATTAGCTGATTTT
CAAGAGCAGTCCAGCTCCACTCTGTGCTTTGATTGAAATGTCTAATTAAC
ATATAGGCCCCGGGTATAACCACAAGATAGAGTACTATAGGACATTCTAT
TTAGGCCACGTAAAACTACAATAGAATTTCACCGCTTGACTAATTAGTTG
ACTTTgtggattttcgaaaacaatagcaacaataccTTTTGTGATATTCC
CTTTTTTGCTCGGAGAAGCTTAAAACATTCCCTCTAGCCTTAGCCcccgg
gctttacagaaatctattAGTATAACATTAAATGAACGCTGAAACAGACA
CCCCTTTCTCAATGCCCCGATGGAACTTTTTTGTTGGGAtattaactttt
tcaaaatccCGATGGAGATCAATAGTTTCAAGAGTGGATgcaatattttt
tctctttaatttcCGATGGGATAATATTGATATGTCACTTTCCCACTGTG
GTTAATTTCTTCcgattttttggtcaatttttagtGGGCTGAGGGCTCCA
GCGGGTGTGTGACACGGGGGTGTAAATAACTTAGTTTTCAATTGCGAAGA
CTGCTAAAAGATGACCCAGTTAGTATTTTATAGGCATTCTGCCCATCtaa
caattttcaatttcattttttctttctagtACAAATGCTGTGAAACAGAC
AGCTGCAATGGCTCGATGATGATCATTTATTCAAAATGGTTGATGTCTTT
CACATTTCTAATTGTTTTCATTGTCATTATTTGGTAATGAATTTATTGTA
GGACACACATTTATTGTAGGATACAAAATCCACCCCATAAAATCACTCAT
CTCACTAGATTCTGATTTCACACACCCTTCTCAAAGCCCGATGCAAACCC
TTCCCACTAGAAAAGTTaaccaaaatatcgtcctcgccgaaaaattttcc
ttaaatttttgtccccactggaaataatcaaataaaccaatcctcactgc
aaaatacttACTATTTTTCTCATCCCCactcaattttctgacttgaaaac
aaaagaattgaaatccatggtcataaaaaatatgagaacatcaatcccca
tcgagtttcagtcatttatttttatccccacaaatcctaccgggtctgtg
agaaggggttgtgATTTCCAGATAAGGTCGTATAGTATTTCCGAATAGAA
TTTTTGCAGCAAAAAGATCAACCGTTCTAATCTCTTTTCTTATGCAATCC
TAGCTGAATTTAAGAAAGTTCCTGAAGTTCCCGTATTCCCACTTGTgagt
tttaaaaacaatctTGCATCCAAGCgatatttcagatttttaaatccTGC
CTGGTTTTCAGAAACACGGATAAGAGATGTATTTGTGTTCATGTGAATTT
GGTTTTCGTcgggattttttttttatattgatcaTATTTTCATCGATATT
TTAGACATATTGCATTGTTGTGAAAATAGTGTTTTTAGGGAAGTTATATA
TGGCATGGTTTTGTCCAGCTTAGAAGCAGCTTCGTTAAAACGTGTTTGTT
CAATGTTAGAAGTTTGGATGCATATTCTGGTTGTTGTGTGGTCCTGGTTG
CCTTTTGGGTGCGACACATATTaacaaatattttgtaaaaatacaatatt
tatTTCACCCGCCTACAGTGCAATCggttaatattttttttgtcgAGAGT
CTATATATTANCTGCCTTTTGGGTGCGACACATATCaacaaatattttgt
aaaaatacaaTATTCATTTCACCCGCCTACAGTGCAATcggttaatattt
ttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051496-exon-scaffold_202-1491911889:312495..312509 | TCONS_00051496-exon-scaffold_202-1491911889:312495..312509 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1510915933:312495..312509 | TCONS_00051496-exon-scaffold_202-1510915933:312495..312509 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1575043694:312495..312509 | TCONS_00051496-exon-scaffold_202-1575043694:312495..312509 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1491911889:313126..313229 | TCONS_00051496-exon-scaffold_202-1491911889:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1510915933:313126..313229 | TCONS_00051496-exon-scaffold_202-1510915933:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1575043694:313126..313229 | TCONS_00051496-exon-scaffold_202-1575043694:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1491911889:319019..319126 | TCONS_00051496-exon-scaffold_202-1491911889:319019..319126 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1510915933:319019..319126 | TCONS_00051496-exon-scaffold_202-1510915933:319019..319126 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1575043694:319019..319126 | TCONS_00051496-exon-scaffold_202-1575043694:319019..319126 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1491911889:320174..321297 | TCONS_00051496-exon-scaffold_202-1491911889:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1510915933:320174..321297 | TCONS_00051496-exon-scaffold_202-1510915933:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051496-exon-scaffold_202-1575043694:320174..321297 | TCONS_00051496-exon-scaffold_202-1575043694:320174..321297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:312495..321297 + |
Blast
The following BLAST results are available for this feature:
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