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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051498 ID=TCONS_00051498|Name=TCONS_00051498|organism=Clytia hemisphaerica|type=transcript|length=1306bp
GTCAGAAATCAATGACCACCTGTTCAAGTCAACAATATGAAGCACCTTGT
GATGTCTCTGAAATGTGTTTTCAGgcttcatggAAACTTTTTAACGCCTG
GCAATTTCATATGAAAGGTTGTACACCGAAGACTCAATGCAACAGTGACA
AACTTTGTGGTTCAGCTGAGAGAGATTGTTTGtACAAATGCTGTGAAACA
GACAGCTGCAATGGCTCGATGATGATCATTTATTCAAAATGGTTGATGTC
TTTCACATTTCTAATTGTTTTCATTGTCATTATTTGGTAATGAATTTATT
GTAGGACACACATTTATTGTAGGATACAAAATCCACCCCATAAAATCACT
CATCTCACTAGATTCTGATTTCACACACCCTTCTCAAAGCCCGATGCAAA
CCCTTCCCACTAGAAAAGTTaaccaaaatatcgtcctcgccgaaaaattt
tccttaaatttttgtccccactggaaataatcaaataaaccaatcctcac
tgcaaaatacttACTATTTTTCTCATCCCCactcaattttctgacttgaa
aacaaaagaattgaaatccatggtcataaaaaatatgagaacatcaatcc
ccatcgagtttcagtcatttatttttatccccacaaatcctaccgggtct
gtgagaaggggttgtgATTTCCAGATAAGGTCGTATAGTATTTCCGAATA
GAATTTTTGCAGCAAAAAGATCAACCGTTCTAATCTCTTTTCTTATGCAA
TCCTAGCTGAATTTAAGAAAGTTCCTGAAGTTCCCGTATTCCCACTTGTg
agttttaaaaacaatctTGCATCCAAGCgatatttcagatttttaaatcc
TGCCTGGTTTTCAGAAACACGGATAAGAGATGTATTTGTGTTCATGTGAA
TTTGGTTTTCGTcgggattttttttttatattgatcaTATTTTCATCGAT
ATTTTAGACATATTGCATTGTTGTGAAAATAGTGTTTTTAGGGAAGTTAT
ATATGGCATGGTTTTGTCCAGCTTAGAAGCAGCTTCGTTAAAACGTGTTT
GTTCAATGTTAGAAGTTTGGATGCATATTCTGGTTGTTGTGTGGTCCTGG
TTGCCTTTTGGGTGCGACACATATTaacaaatattttgtaaaaatacaat
atttatTTCACCCGCCTACAGTGCAATCggttaatattttttttgtcgAG
AGTCTATATATTANCTGCCTTTTGGGTGCGACACATATCaacaaatattt
tgtaaaaatacaaTATTCATTTCACCCGCCTACAGTGCAATcggttaata
tttttt Run BLAST on NCBI transcript from alignment at scaffold_202:313156..321297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051498 ID=TCONS_00051498|Name=TCONS_00051498|organism=Clytia hemisphaerica|type=transcript|length=8142bp|location=Sequence derived from alignment at scaffold_202:313156..321297+ (Clytia hemisphaerica)
GTCAGAAATCAATGACCACCTGTTCAAGTCAACAATATGAAGCACCTTGT
GATGTCTCTGAAATGTGTTTTCAGGTTAAATTCTTACTTAACTTTTTGTA
GTCAGCAGATATCATCAGtcataaagaggaaaaatatctaaaaatatttc
tacTCGCTTTGCTCACATAATagttccaaaaatattttcctttaaagGGG
ACACCAAAAAAAATAACCAATTTGGGAAAATTGGCTCATCAAATTGCCCC
AATTTCGATCAAACCACTACGCTACCAACACGTAGAAATGAATAAATATG
TCCAAGAATTGTCCCCCTACTAATTATAGCTTATGAAACGTAAAGTCATT
TCCAACCGAAATTCCGTTgttgtttaaaaaaacttagaCGTAGAGCTCTT
GAAAACTGcgggaaaaacctttttttctgaAACTCTTTTTAAACCCACCA
TCAAGGTTTGACGTCTCAAATTTTTAGAAGAATTATGCAAAAAGAAATTG
ctgatttgacaaaaaatgaggcgccgcaaaatttaagtttaaattGTTAT
CTTCCGTTAAATCATTACATTTCATATAATGTTCTATCataattttaagg
cttcatggAAACTTTTTAACGCCTGGCAATTTCATATGAAAGGTTGCACA
CCGAAAACTCAATGCAACAGTGATAAACTATGTGGTTCAGCTGAAAGAGA
TTGTTTGGTAAGATATTCACATTCTTGGTTGTAAGAGTTGAATAGAGTGA
CCTCTGAAGAGAAGATAATCTTGTTTTGTTTCACAGACTTGAACAATCTC
ATTCGTGGTCATAATTAGCTGATTTTCAAGAGCCATCTAACTCCAGTCTG
TTTCAAACTGTCTAAtcacagtgccgtagcaactgggggagcaagggggg
gctatgccccccccccaataattttttcaaaaatggttattttgaaaagt
gcaaagtttttcctttctaatttgtcataattgtctttatgtgcatgttt
tgagtgtatttttaagcaatctagagctcaaattttcaaaatttcccccc
tctggccaaaccatggttggccctcgcggtgtcactaaacttcagccccc
ccaatatgaaaatgcttcctacggcactgaatcAACATATACCCCCGGTA
TAACCACAAGtctataaagcccgaagagATAGATAAagtatttttgctga
aaaatgagCCTCAGTGGGAATGACAACTTTATCAAAATACCGATGGGGAT
CAATTGTTTCAAGAGTGGATACACTGTTATGTCTATTTTCTATTTAATTT
CCGATGGGAATAAAGCAATAGAACACTTCCCAGTAGGGTTAATTTAATCC
ACCAGGAAAGATTATTTGGTCATTTTTTTCAGTGGGGTATGTGACACGGG
GATGTAGACAACGTAATTTTTAGTTGCGAAGACTGCTGCGAAAGATGATC
CAGTCAGTATTTAATAGAGATCTGTGCatataacaattttatttttttct
ttctagtaCAAATGCTGTGAAACAGACAGCTGCAATGGCTCGATGTGACg
ataaaataatttatttttgatttatttttgatttatgatttatttatgat
ttatttttgatttatttttgatttatctctacagtatgtggcccccaaaa
cgtcgatcaaatttgaaatttctctcaaatctagaaggaaaagaggtttt
acaattttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTtttaatggc
ccccaaaacggaggtttgcaattttagcgatttctcgagatatctttaag
atatgaatacaaaattttgaccatagttttgaaatgcgatttagagggtt
ttgggcataaatttttttggtaaaatttttacagtatacccctggttgtc
aaaacggaggtttggggcccccaaaacgtaggtgtagttaaaatcaaatt
attaagcccagtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtttttcaaaatcaaccaa
acagtctctttttgttcttataaagttataaattgatcttttttgcttcc
aatgatggtacatcaaagaaaagccgctttgagtagatttataaaagatt
tcaacgaccatttagatcattaccgagacgttttctctccatctatatct
ttattacctccatgctcAAACTTTGAGTCAAAGAGACTCTACATACTCAA
GTTTCCCACTTTAATGTTTTTCATCCATTTCTGGGATATAAACATTGTTC
GAACCAAAGGTCATTACCGTCATCACATTCGTTAAATGCCGTTATTATAA
CATCAGAAGTATGATGTGCTGAGCTCAGAAACCCTTATGAGGATTATGGT
ATGGAGAGTACAAGTACAGCAACCAACACACCCCTATCATTAAAAGgata
attttgcaaaaaaaaacatttcaaatttttcaaaattttgctgtcgtcag
cagaaatcagcaaaatacgaaatcttgcaaaaaagtgttgatgtcagcaa
aatttcaaacattttttttcttcaaaatgatccttttaatgatgtgcaac
tttagttcaattttcgtgtttttacCTTTAGCCAAACttgagttattcaa
aaaacaagttttgctgacgtcagcaatttttagtttttgcggtttttcgc
gaaaatgaggGCGTGAACAATTAGGTATCCTTCGTAGTAAATCATTTGTT
TGCTCATTTTCTGCTGGCTAATGGTcttcaaaaattatcgtaattttcag
gtttttgagacatgccataacttaccgaGTTGTCTAAACTATCTGCACCG
TGCAGGTACCCTGAGTGTCAAACTTGGTTTTCTTTGAGATACAAAGCATA
TAGATTTTTTCGCGCTGACCTTTCAGCAAAAATACACGGATGTTCCGATG
TTCTTAACACCGACCAAAACACGCTCTAAAACGACTTTCTTCTGCGTTCA
TTAGGTTTATAGCGTAGATTTTTTGCGTCCAACCAATGGGAAGAAGGAAG
AAGTCATAAGAGTCATTCACGATTACCCATGATTCTTTTGAACTTTGAAA
TGTCTTGCAACACCGAAATGCCAAaacattattttcaagcacCTAAAACA
CTGGGTATCAATCATATTAAAAGAACTTATCATGACATTTTAGGACTTAC
ATAAATAAGGGGCATGTCATGCCCATGAAGCTTGCTCGTTTTAAGATATG
ACTTATATacgaataagaatttttatcaaaacgaAGGATCAAAGGAGAAA
CCACAAAACAAAATGCTTGCTATCAAGAACAAAAATTTCGATGATGGTGT
GATTTACATTTTATTTCGACTGAGTTTTACCATTATCAACAAGATGAGAA
ACTTTGTCCTGTTTCTGACTTTtgtttttatgacattttcaaataaaggt
AAGATTTACTTTCTTAAATACTTTGATCGAATACATTACTCGTTAGATAT
TTATATTGTCTCTATCATATTAAAACCCCAATGTTGCTACATAAGACACC
ATATAGCCAACTTTTGTGCAATTTGTTATAATTGTGAAATTTATGAACTG
AGCAAAACAGGTAAAGTTTTGATAGTGATTTTTAAACTCAACACAAACAA
ATAACCTGGTACTTCGATTACTTCTTCCTTGAAGCGCCTCGTCGAATAAT
GNGTAACCTGTTACTTCGATTACTTCTTCCTTGAAGCTCCTCGTCGAATA
ATGCCCCTCCTTTAGAGAAGATTTTCAACGGGTatttattcgaagtaatg
cggtgactcaaaattaatgaaatttcttctcCACAGTTGATGGTTTACGT
TGCCAACAATGCTACAGTCAGAAATCAATGACCACCTGCTCAAGTCAACA
ATATGAAGCACACTGCGATGTCTCTGAAATGTGTTTTCAGGTAAAACTCC
TAACTGTTTCTTTATATTTAATCTTTAGTAGTCTGTAGCGTGGTGGTAAG
TTTTAGCCATTAAGAGGAAATATATCCAAAAGTATCGTACTCACTTCGct
cacataatttttttttcaaaactatttctcTTGATAGGGGGGCACCAAAA
TATTCGATGCCCAAATTTTTGTCGACCTACCTAGTCTGAAGTGAaacgca
gacctctatagatatatttcctataagaaactcttttcgctagaggatga
acAGAAGTCTACGACCTACCATGCTACGCTAAAAAAAACACGTTAATTGA
AGAAGTATGTCCAAAAATGTCAACAGTTATAGCTCGAAAATAAAACTCAT
TTCCAGTCAAAATTCTGTTTTAGAAAACTTAGACCAAAAGCTTTTGAAAA
CtgcaaaaaccttttttttgaaactcGTCATAGATCCGCCAACGAGGGTT
AGATGTCTCAAATTTTTAGTAGAATTATGTAAAagaaattgggcttttcc
agaaaaaaaccgtataccccctgttgaggaggtccatttccgttccaagg
gggtaaggtttgatatgtggcagAATTTCATAGgaagatacaaaaatctg
tcaaaaataactggaattccatgggggtaacCTTTTAAATcttactaaaa
ttcagaattccagaggggtttaagcctgaaattagctggaattccagggg
ggttacagcatttcagccacaaaatgatggacctcctcaacacggggtta
cggtttttttctggaaaagcccatgcTAATCTGACAAAAAATGAGGTGCG
AAAAAGGTTATCATCTTCCGTTAAATTATTACATTTCATataatatttta
tcataatttttagGCTTCATGGAAACTTTTTAACGCCTGGCAATTTCATA
TGAAAGGTTGTACACCGAAGACTCAATGCAACAGTGACAAACTTTGTGGT
TCAGCTGAGAGAGATTGTTTGGTAAGATATTTAACGCCCCTGAATAACAG
CCCCTGTGGAAATTCTTTCTTCAACTGGGATAAATtcttattgaaatccc
aatgggaatagaaattctattgatccaaggttaaaaatccagtgggatgg
ttttgagttcaatttctaaacatggaatttcgaatggggatgaaatcaaa
gtcaatttcccagtggggctgaaataaTTACAGGGCTTTTTcacaccggg
gacgaaatttttgtcaaacttTCCAGTGACGGTGGggtctcagtgggtct
gtgacacaggggtgttatttaCATTCTTGATTGAAAGAGTTGAATTGAGT
AACTGGATGCACATTCTGAAGAGAAAATAATCTTGTTTGGTTTTCTCAGA
CCTAGACAATCTCATTCGTGGTCATAATTAGCTGATTTTCAAGAGCAGTC
CAGCTCCACTCTGTGCTTTGATTGAAATGTCTAATTAACATATAGGCCCC
GGGTATAACCACAAGATAGAGTACTATAGGACATTCTATTTAGGCCACGT
AAAACTACAATAGAATTTCACCGCTTGACTAATTAGTTGACTTTgtggat
tttcgaaaacaatagcaacaataccTTTTGTGATATTCCCTTTTTTGCTC
GGAGAAGCTTAAAACATTCCCTCTAGCCTTAGCCcccgggctttacagaa
atctattAGTATAACATTAAATGAACGCTGAAACAGACACCCCTTTCTCA
ATGCCCCGATGGAACTTTTTTGTTGGGAtattaactttttcaaaatccCG
ATGGAGATCAATAGTTTCAAGAGTGGATgcaatattttttctctttaatt
tcCGATGGGATAATATTGATATGTCACTTTCCCACTGTGGTTAATTTCTT
CcgattttttggtcaatttttagtGGGCTGAGGGCTCCAGCGGGTGTGTG
ACACGGGGGTGTAAATAACTTAGTTTTCAATTGCGAAGACTGCTAAAAGA
TGACCCAGTTAGTATTTTATAGGCATTCTGCCCATCtaacaattttcaat
ttcattttttctttctagtACAAATGCTGTGAAACAGACAGCTGCAATGG
CTCGATGATGATCATTTATTCAAAATGGTTGATGTCTTTCACATTTCTAA
TTGTTTTCATTGTCATTATTTGGTAATGAATTTATTGTAGGACACACATT
TATTGTAGGATACAAAATCCACCCCATAAAATCACTCATCTCACTAGATT
CTGATTTCACACACCCTTCTCAAAGCCCGATGCAAACCCTTCCCACTAGA
AAAGTTaaccaaaatatcgtcctcgccgaaaaattttccttaaatttttg
tccccactggaaataatcaaataaaccaatcctcactgcaaaatacttAC
TATTTTTCTCATCCCCactcaattttctgacttgaaaacaaaagaattga
aatccatggtcataaaaaatatgagaacatcaatccccatcgagtttcag
tcatttatttttatccccacaaatcctaccgggtctgtgagaaggggttg
tgATTTCCAGATAAGGTCGTATAGTATTTCCGAATAGAATTTTTGCAGCA
AAAAGATCAACCGTTCTAATCTCTTTTCTTATGCAATCCTAGCTGAATTT
AAGAAAGTTCCTGAAGTTCCCGTATTCCCACTTGTgagttttaaaaacaa
tctTGCATCCAAGCgatatttcagatttttaaatccTGCCTGGTTTTCAG
AAACACGGATAAGAGATGTATTTGTGTTCATGTGAATTTGGTTTTCGTcg
ggattttttttttatattgatcaTATTTTCATCGATATTTTAGACATATT
GCATTGTTGTGAAAATAGTGTTTTTAGGGAAGTTATATATGGCATGGTTT
TGTCCAGCTTAGAAGCAGCTTCGTTAAAACGTGTTTGTTCAATGTTAGAA
GTTTGGATGCATATTCTGGTTGTTGTGTGGTCCTGGTTGCCTTTTGGGTG
CGACACATATTaacaaatattttgtaaaaatacaatatttatTTCACCCG
CCTACAGTGCAATCggttaatattttttttgtcgAGAGTCTATATATTAN
CTGCCTTTTGGGTGCGACACATATCaacaaatattttgtaaaaatacaaT
ATTCATTTCACCCGCCTACAGTGCAATcggttaatatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051498-exon-scaffold_202-1491911889:313156..313229 | TCONS_00051498-exon-scaffold_202-1491911889:313156..313229 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1510915933:313156..313229 | TCONS_00051498-exon-scaffold_202-1510915933:313156..313229 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1575043694:313156..313229 | TCONS_00051498-exon-scaffold_202-1575043694:313156..313229 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1491911889:313755..313777 | TCONS_00051498-exon-scaffold_202-1491911889:313755..313777 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1510915933:313755..313777 | TCONS_00051498-exon-scaffold_202-1510915933:313755..313777 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1575043694:313755..313777 | TCONS_00051498-exon-scaffold_202-1575043694:313755..313777 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1491911889:319042..319126 | TCONS_00051498-exon-scaffold_202-1491911889:319042..319126 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1510915933:319042..319126 | TCONS_00051498-exon-scaffold_202-1510915933:319042..319126 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1575043694:319042..319126 | TCONS_00051498-exon-scaffold_202-1575043694:319042..319126 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1491911889:320174..321297 | TCONS_00051498-exon-scaffold_202-1491911889:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1510915933:320174..321297 | TCONS_00051498-exon-scaffold_202-1510915933:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051498-exon-scaffold_202-1575043694:320174..321297 | TCONS_00051498-exon-scaffold_202-1575043694:320174..321297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:313156..321297 + |
Blast
The following BLAST results are available for this feature:
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