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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051493 ID=TCONS_00051493|Name=TCONS_00051493|organism=Clytia hemisphaerica|type=transcript|length=1402bp
TGTtgacaaagatgaaaaattttgtCCTGTTTCTGGCATTTGTTTTCAtg
acattttcaaataaagTTGATGGTTTGCGTTGCCAACAATGTTTCAGTCA
GAAATCAATGACCACCTGTTCAAGTCAACAATATGAAGCACCTTGTGATG
TCTCTGAAATGTGTTTTCAGgcttcatggAAACTTTTTAACGCCTGGCAA
TTTCATATGAAAGGTTGCACACCGAAAACTCAATGCAACAGTGATAAACT
ATGTGGTTCAGCTGAAAGAGATTGTTTGtACAAATGCTGTGAAACAGACA
GCTGCAATGGCTCGATGATGATCATTTATTCAAAATGGTTGATGTCTTTC
ACATTTCTAATTGTTTTCATTGTCATTATTTGGTAATGAATTTATTGTAG
GACACACATTTATTGTAGGATACAAAATCCACCCCATAAAATCACTCATC
TCACTAGATTCTGATTTCACACACCCTTCTCAAAGCCCGATGCAAACCCT
TCCCACTAGAAAAGTTaaccaaaatatcgtcctcgccgaaaaattttcct
taaatttttgtccccactggaaataatcaaataaaccaatcctcactgca
aaatacttACTATTTTTCTCATCCCCactcaattttctgacttgaaaaca
aaagaattgaaatccatggtcataaaaaatatgagaacatcaatccccat
cgagtttcagtcatttatttttatccccacaaatcctaccgggtctgtga
gaaggggttgtgATTTCCAGATAAGGTCGTATAGTATTTCCGAATAGAAT
TTTTGCAGCAAAAAGATCAACCGTTCTAATCTCTTTTCTTATGCAATCCT
AGCTGAATTTAAGAAAGTTCCTGAAGTTCCCGTATTCCCACTTGTgagtt
ttaaaaacaatctTGCATCCAAGCgatatttcagatttttaaatccTGCC
TGGTTTTCAGAAACACGGATAAGAGATGTATTTGTGTTCATGTGAATTTG
GTTTTCGTcgggattttttttttatattgatcaTATTTTCATCGATATTT
TAGACATATTGCATTGTTGTGAAAATAGTGTTTTTAGGGAAGTTATATAT
GGCATGGTTTTGTCCAGCTTAGAAGCAGCTTCGTTAAAACGTGTTTGTTC
AATGTTAGAAGTTTGGATGCATATTCTGGTTGTTGTGTGGTCCTGGTTGC
CTTTTGGGTGCGACACATATTaacaaatattttgtaaaaatacaatattt
atTTCACCCGCCTACAGTGCAATCggttaatattttttttgtcgAGAGTC
TATATATTANCTGCCTTTTGGGTGCGACACATATCaacaaatattttgta
aaaatacaaTATTCATTTCACCCGCCTACAGTGCAATcggttaatatttt
tt Run BLAST on NCBI transcript from alignment at scaffold_202:312444..321297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051493 ID=TCONS_00051493|Name=TCONS_00051493|organism=Clytia hemisphaerica|type=transcript|length=8854bp|location=Sequence derived from alignment at scaffold_202:312444..321297+ (Clytia hemisphaerica)
TGTtgacaaagatgaaaaattttgtCCTGTTTCTGGCATTTGTTTTCAtg
acattttcaaataaaggtaagattaattttaaatgaatatctaaaataat
ttGATCAAACCATCACTGGTTAGATATCTATATTGTCTCCCCAATGTTGC
TGCATTAGACATCATTCGACCCAATCTCGTACCCAAAGCCATTTGTAGTT
TTTGTCCGACCCAACTTCCATGTAGTGCAATGATCGTTAAGTGTATTTTC
CCCCAATCTCAAAGCCATGTGTTATTTGTTATGATTGTGCAATTTACCGT
ACTTACCGTACAACGACCCAATATTTCCCTTAACAATCAAGAGCGCCAAA
ATCGCCAAAAAGTGACTATCACAGCACTATccgaatttttgcgattttgg
cgcTTTTCGATTGTTCAGTGAACTATTGGTTTGTTATACAATAGGTAAGT
ACATTTTAAACAGTATGAACTGAACAAAACATGGAATCAAAAGGGTTTAA
TGTTTTGGTAGTGCTTTAAACCCACCACAAACAAATTACCGTGTTACTTC
AAGTGAACATCTCCTTCCTTTAAACGCCTCGTAAAACGCCTCGTAAAACG
CCCCTCCTTTAGGGAAAATCTTCAATGGGTGCTTATGCGAAGGAATACGG
TAATTCAAGGTTAATGAATTTCTCCTCCATAGTTGATGGTTTGCGTTGCC
AACAATGTTTCAGTCAGAAATCAATGACCACCTGTTCAAGTCAACAATAT
GAAGCACCTTGTGATGTCTCTGAAATGTGTTTTCAGGTTAAATTCTTACT
TAACTTTTTGTAGTCAGCAGATATCATCAGtcataaagaggaaaaatatc
taaaaatatttctacTCGCTTTGCTCACATAATagttccaaaaatatttt
cctttaaagGGGACACCAAAAAAAATAACCAATTTGGGAAAATTGGCTCA
TCAAATTGCCCCAATTTCGATCAAACCACTACGCTACCAACACGTAGAAA
TGAATAAATATGTCCAAGAATTGTCCCCCTACTAATTATAGCTTATGAAA
CGTAAAGTCATTTCCAACCGAAATTCCGTTgttgtttaaaaaaacttaga
CGTAGAGCTCTTGAAAACTGcgggaaaaacctttttttctgaAACTCTTT
TTAAACCCACCATCAAGGTTTGACGTCTCAAATTTTTAGAAGAATTATGC
AAAAAGAAATTGctgatttgacaaaaaatgaggcgccgcaaaatttaagt
ttaaattGTTATCTTCCGTTAAATCATTACATTTCATATAATGTTCTATC
ataattttaaggcttcatggAAACTTTTTAACGCCTGGCAATTTCATATG
AAAGGTTGCACACCGAAAACTCAATGCAACAGTGATAAACTATGTGGTTC
AGCTGAAAGAGATTGTTTGGTAAGATATTCACATTCTTGGTTGTAAGAGT
TGAATAGAGTGACCTCTGAAGAGAAGATAATCTTGTTTTGTTTCACAGAC
TTGAACAATCTCATTCGTGGTCATAATTAGCTGATTTTCAAGAGCCATCT
AACTCCAGTCTGTTTCAAACTGTCTAAtcacagtgccgtagcaactgggg
gagcaagggggggctatgccccccccccaataattttttcaaaaatggtt
attttgaaaagtgcaaagtttttcctttctaatttgtcataattgtcttt
atgtgcatgttttgagtgtatttttaagcaatctagagctcaaattttca
aaatttcccccctctggccaaaccatggttggccctcgcggtgtcactaa
acttcagcccccccaatatgaaaatgcttcctacggcactgaatcAACAT
ATACCCCCGGTATAACCACAAGtctataaagcccgaagagATAGATAAag
tatttttgctgaaaaatgagCCTCAGTGGGAATGACAACTTTATCAAAAT
ACCGATGGGGATCAATTGTTTCAAGAGTGGATACACTGTTATGTCTATTT
TCTATTTAATTTCCGATGGGAATAAAGCAATAGAACACTTCCCAGTAGGG
TTAATTTAATCCACCAGGAAAGATTATTTGGTCATTTTTTTCAGTGGGGT
ATGTGACACGGGGATGTAGACAACGTAATTTTTAGTTGCGAAGACTGCTG
CGAAAGATGATCCAGTCAGTATTTAATAGAGATCTGTGCatataacaatt
ttatttttttctttctagtaCAAATGCTGTGAAACAGACAGCTGCAATGG
CTCGATGTGACgataaaataatttatttttgatttatttttgatttatga
tttatttatgatttatttttgatttatttttgatttatctctacagtatg
tggcccccaaaacgtcgatcaaatttgaaatttctctcaaatctagaagg
aaaagaggttttacaattttttttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TCTtttaatggcccccaaaacggaggtttgcaattttagcgatttctcga
gatatctttaagatatgaatacaaaattttgaccatagttttgaaatgcg
atttagagggttttgggcataaatttttttggtaaaatttttacagtata
cccctggttgtcaaaacggaggtttggggcccccaaaacgtaggtgtagt
taaaatcaaattattaagcccagtgNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtttttc
aaaatcaaccaaacagtctctttttgttcttataaagttataaattgatc
ttttttgcttccaatgatggtacatcaaagaaaagccgctttgagtagat
ttataaaagatttcaacgaccatttagatcattaccgagacgttttctct
ccatctatatctttattacctccatgctcAAACTTTGAGTCAAAGAGACT
CTACATACTCAAGTTTCCCACTTTAATGTTTTTCATCCATTTCTGGGATA
TAAACATTGTTCGAACCAAAGGTCATTACCGTCATCACATTCGTTAAATG
CCGTTATTATAACATCAGAAGTATGATGTGCTGAGCTCAGAAACCCTTAT
GAGGATTATGGTATGGAGAGTACAAGTACAGCAACCAACACACCCCTATC
ATTAAAAGgataattttgcaaaaaaaaacatttcaaatttttcaaaattt
tgctgtcgtcagcagaaatcagcaaaatacgaaatcttgcaaaaaagtgt
tgatgtcagcaaaatttcaaacattttttttcttcaaaatgatcctttta
atgatgtgcaactttagttcaattttcgtgtttttacCTTTAGCCAAACt
tgagttattcaaaaaacaagttttgctgacgtcagcaatttttagttttt
gcggtttttcgcgaaaatgaggGCGTGAACAATTAGGTATCCTTCGTAGT
AAATCATTTGTTTGCTCATTTTCTGCTGGCTAATGGTcttcaaaaattat
cgtaattttcaggtttttgagacatgccataacttaccgaGTTGTCTAAA
CTATCTGCACCGTGCAGGTACCCTGAGTGTCAAACTTGGTTTTCTTTGAG
ATACAAAGCATATAGATTTTTTCGCGCTGACCTTTCAGCAAAAATACACG
GATGTTCCGATGTTCTTAACACCGACCAAAACACGCTCTAAAACGACTTT
CTTCTGCGTTCATTAGGTTTATAGCGTAGATTTTTTGCGTCCAACCAATG
GGAAGAAGGAAGAAGTCATAAGAGTCATTCACGATTACCCATGATTCTTT
TGAACTTTGAAATGTCTTGCAACACCGAAATGCCAAaacattattttcaa
gcacCTAAAACACTGGGTATCAATCATATTAAAAGAACTTATCATGACAT
TTTAGGACTTACATAAATAAGGGGCATGTCATGCCCATGAAGCTTGCTCG
TTTTAAGATATGACTTATATacgaataagaatttttatcaaaacgaAGGA
TCAAAGGAGAAACCACAAAACAAAATGCTTGCTATCAAGAACAAAAATTT
CGATGATGGTGTGATTTACATTTTATTTCGACTGAGTTTTACCATTATCA
ACAAGATGAGAAACTTTGTCCTGTTTCTGACTTTtgtttttatgacattt
tcaaataaaggtAAGATTTACTTTCTTAAATACTTTGATCGAATACATTA
CTCGTTAGATATTTATATTGTCTCTATCATATTAAAACCCCAATGTTGCT
ACATAAGACACCATATAGCCAACTTTTGTGCAATTTGTTATAATTGTGAA
ATTTATGAACTGAGCAAAACAGGTAAAGTTTTGATAGTGATTTTTAAACT
CAACACAAACAAATAACCTGGTACTTCGATTACTTCTTCCTTGAAGCGCC
TCGTCGAATAATGNGTAACCTGTTACTTCGATTACTTCTTCCTTGAAGCT
CCTCGTCGAATAATGCCCCTCCTTTAGAGAAGATTTTCAACGGGTattta
ttcgaagtaatgcggtgactcaaaattaatgaaatttcttctcCACAGTT
GATGGTTTACGTTGCCAACAATGCTACAGTCAGAAATCAATGACCACCTG
CTCAAGTCAACAATATGAAGCACACTGCGATGTCTCTGAAATGTGTTTTC
AGGTAAAACTCCTAACTGTTTCTTTATATTTAATCTTTAGTAGTCTGTAG
CGTGGTGGTAAGTTTTAGCCATTAAGAGGAAATATATCCAAAAGTATCGT
ACTCACTTCGctcacataatttttttttcaaaactatttctcTTGATAGG
GGGGCACCAAAATATTCGATGCCCAAATTTTTGTCGACCTACCTAGTCTG
AAGTGAaacgcagacctctatagatatatttcctataagaaactcttttc
gctagaggatgaacAGAAGTCTACGACCTACCATGCTACGCTAAAAAAAA
CACGTTAATTGAAGAAGTATGTCCAAAAATGTCAACAGTTATAGCTCGAA
AATAAAACTCATTTCCAGTCAAAATTCTGTTTTAGAAAACTTAGACCAAA
AGCTTTTGAAAACtgcaaaaaccttttttttgaaactcGTCATAGATCCG
CCAACGAGGGTTAGATGTCTCAAATTTTTAGTAGAATTATGTAAAagaaa
ttgggcttttccagaaaaaaaccgtataccccctgttgaggaggtccatt
tccgttccaagggggtaaggtttgatatgtggcagAATTTCATAGgaaga
tacaaaaatctgtcaaaaataactggaattccatgggggtaacCTTTTAA
ATcttactaaaattcagaattccagaggggtttaagcctgaaattagctg
gaattccaggggggttacagcatttcagccacaaaatgatggacctcctc
aacacggggttacggtttttttctggaaaagcccatgcTAATCTGACAAA
AAATGAGGTGCGAAAAAGGTTATCATCTTCCGTTAAATTATTACATTTCA
TataatattttatcataatttttagGCTTCATGGAAACTTTTTAACGCCT
GGCAATTTCATATGAAAGGTTGTACACCGAAGACTCAATGCAACAGTGAC
AAACTTTGTGGTTCAGCTGAGAGAGATTGTTTGGTAAGATATTTAACGCC
CCTGAATAACAGCCCCTGTGGAAATTCTTTCTTCAACTGGGATAAATtct
tattgaaatcccaatgggaatagaaattctattgatccaaggttaaaaat
ccagtgggatggttttgagttcaatttctaaacatggaatttcgaatggg
gatgaaatcaaagtcaatttcccagtggggctgaaataaTTACAGGGCTT
TTTcacaccggggacgaaatttttgtcaaacttTCCAGTGACGGTGGggt
ctcagtgggtctgtgacacaggggtgttatttaCATTCTTGATTGAAAGA
GTTGAATTGAGTAACTGGATGCACATTCTGAAGAGAAAATAATCTTGTTT
GGTTTTCTCAGACCTAGACAATCTCATTCGTGGTCATAATTAGCTGATTT
TCAAGAGCAGTCCAGCTCCACTCTGTGCTTTGATTGAAATGTCTAATTAA
CATATAGGCCCCGGGTATAACCACAAGATAGAGTACTATAGGACATTCTA
TTTAGGCCACGTAAAACTACAATAGAATTTCACCGCTTGACTAATTAGTT
GACTTTgtggattttcgaaaacaatagcaacaataccTTTTGTGATATTC
CCTTTTTTGCTCGGAGAAGCTTAAAACATTCCCTCTAGCCTTAGCCcccg
ggctttacagaaatctattAGTATAACATTAAATGAACGCTGAAACAGAC
ACCCCTTTCTCAATGCCCCGATGGAACTTTTTTGTTGGGAtattaacttt
ttcaaaatccCGATGGAGATCAATAGTTTCAAGAGTGGATgcaatatttt
ttctctttaatttcCGATGGGATAATATTGATATGTCACTTTCCCACTGT
GGTTAATTTCTTCcgattttttggtcaatttttagtGGGCTGAGGGCTCC
AGCGGGTGTGTGACACGGGGGTGTAAATAACTTAGTTTTCAATTGCGAAG
ACTGCTAAAAGATGACCCAGTTAGTATTTTATAGGCATTCTGCCCATCta
acaattttcaatttcattttttctttctagtACAAATGCTGTGAAACAGA
CAGCTGCAATGGCTCGATGATGATCATTTATTCAAAATGGTTGATGTCTT
TCACATTTCTAATTGTTTTCATTGTCATTATTTGGTAATGAATTTATTGT
AGGACACACATTTATTGTAGGATACAAAATCCACCCCATAAAATCACTCA
TCTCACTAGATTCTGATTTCACACACCCTTCTCAAAGCCCGATGCAAACC
CTTCCCACTAGAAAAGTTaaccaaaatatcgtcctcgccgaaaaattttc
cttaaatttttgtccccactggaaataatcaaataaaccaatcctcactg
caaaatacttACTATTTTTCTCATCCCCactcaattttctgacttgaaaa
caaaagaattgaaatccatggtcataaaaaatatgagaacatcaatcccc
atcgagtttcagtcatttatttttatccccacaaatcctaccgggtctgt
gagaaggggttgtgATTTCCAGATAAGGTCGTATAGTATTTCCGAATAGA
ATTTTTGCAGCAAAAAGATCAACCGTTCTAATCTCTTTTCTTATGCAATC
CTAGCTGAATTTAAGAAAGTTCCTGAAGTTCCCGTATTCCCACTTGTgag
ttttaaaaacaatctTGCATCCAAGCgatatttcagatttttaaatccTG
CCTGGTTTTCAGAAACACGGATAAGAGATGTATTTGTGTTCATGTGAATT
TGGTTTTCGTcgggattttttttttatattgatcaTATTTTCATCGATAT
TTTAGACATATTGCATTGTTGTGAAAATAGTGTTTTTAGGGAAGTTATAT
ATGGCATGGTTTTGTCCAGCTTAGAAGCAGCTTCGTTAAAACGTGTTTGT
TCAATGTTAGAAGTTTGGATGCATATTCTGGTTGTTGTGTGGTCCTGGTT
GCCTTTTGGGTGCGACACATATTaacaaatattttgtaaaaatacaatat
ttatTTCACCCGCCTACAGTGCAATCggttaatattttttttgtcgAGAG
TCTATATATTANCTGCCTTTTGGGTGCGACACATATCaacaaatattttg
taaaaatacaaTATTCATTTCACCCGCCTACAGTGCAATcggttaatatt
tttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051493-exon-scaffold_202-1491911889:312444..312509 | TCONS_00051493-exon-scaffold_202-1491911889:312444..312509 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1510915933:312444..312509 | TCONS_00051493-exon-scaffold_202-1510915933:312444..312509 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1575043694:312444..312509 | TCONS_00051493-exon-scaffold_202-1575043694:312444..312509 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1491911889:313126..313229 | TCONS_00051493-exon-scaffold_202-1491911889:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1510915933:313126..313229 | TCONS_00051493-exon-scaffold_202-1510915933:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1575043694:313126..313229 | TCONS_00051493-exon-scaffold_202-1575043694:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1491911889:313755..313862 | TCONS_00051493-exon-scaffold_202-1491911889:313755..313862 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1510915933:313755..313862 | TCONS_00051493-exon-scaffold_202-1510915933:313755..313862 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1575043694:313755..313862 | TCONS_00051493-exon-scaffold_202-1575043694:313755..313862 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1491911889:320174..321297 | TCONS_00051493-exon-scaffold_202-1491911889:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1510915933:320174..321297 | TCONS_00051493-exon-scaffold_202-1510915933:320174..321297 | Clytia hemisphaerica | exon |
| TCONS_00051493-exon-scaffold_202-1575043694:320174..321297 | TCONS_00051493-exon-scaffold_202-1575043694:320174..321297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:312444..321297 + |
Blast
The following BLAST results are available for this feature:
|
