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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051492 ID=TCONS_00051492|Name=TCONS_00051492|organism=Clytia hemisphaerica|type=transcript|length=484bp
TGTtgacaaagatgaaaaattttgtCCTGTTTCTGGCATTTGTTTTCAtg
acattttcaaataaagTTGATGGTTTGCGTTGCCAACAATGTTTCAGTCA
GAAATCAATGACCACCTGTTCAAGTCAACAATATGAAGCACCTTGTGATG
TCTCTGAAATGTGTTTTCAGgcttcatggAAACTTTTTAACGCCTGGCAA
TTTCATATGAAAGGTTGCACACCGAAAACTCAATGCAACAGTGATAAACT
ATGTGGTTCAGCTGAAAGAGATTGTTTGtaCAAATGCTGTGAAACAGACA
GCTGCAATGGCTCGATGTGACgataaaataatttatttttgatttatttt
tgatttatgatttatttatgatttatttttgatttatttttgatttatct
ctacagtatgtggcccccaaaacgtcgatcaaatttgaaatttctctcaa
atctagaaggaaaagaggttttacaatttttttt Run BLAST on NCBI transcript from alignment at scaffold_202:312444..314867+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051492 ID=TCONS_00051492|Name=TCONS_00051492|organism=Clytia hemisphaerica|type=transcript|length=2424bp|location=Sequence derived from alignment at scaffold_202:312444..314867+ (Clytia hemisphaerica)
TGTtgacaaagatgaaaaattttgtCCTGTTTCTGGCATTTGTTTTCAtg
acattttcaaataaaggtaagattaattttaaatgaatatctaaaataat
ttGATCAAACCATCACTGGTTAGATATCTATATTGTCTCCCCAATGTTGC
TGCATTAGACATCATTCGACCCAATCTCGTACCCAAAGCCATTTGTAGTT
TTTGTCCGACCCAACTTCCATGTAGTGCAATGATCGTTAAGTGTATTTTC
CCCCAATCTCAAAGCCATGTGTTATTTGTTATGATTGTGCAATTTACCGT
ACTTACCGTACAACGACCCAATATTTCCCTTAACAATCAAGAGCGCCAAA
ATCGCCAAAAAGTGACTATCACAGCACTATccgaatttttgcgattttgg
cgcTTTTCGATTGTTCAGTGAACTATTGGTTTGTTATACAATAGGTAAGT
ACATTTTAAACAGTATGAACTGAACAAAACATGGAATCAAAAGGGTTTAA
TGTTTTGGTAGTGCTTTAAACCCACCACAAACAAATTACCGTGTTACTTC
AAGTGAACATCTCCTTCCTTTAAACGCCTCGTAAAACGCCTCGTAAAACG
CCCCTCCTTTAGGGAAAATCTTCAATGGGTGCTTATGCGAAGGAATACGG
TAATTCAAGGTTAATGAATTTCTCCTCCATAGTTGATGGTTTGCGTTGCC
AACAATGTTTCAGTCAGAAATCAATGACCACCTGTTCAAGTCAACAATAT
GAAGCACCTTGTGATGTCTCTGAAATGTGTTTTCAGGTTAAATTCTTACT
TAACTTTTTGTAGTCAGCAGATATCATCAGtcataaagaggaaaaatatc
taaaaatatttctacTCGCTTTGCTCACATAATagttccaaaaatatttt
cctttaaagGGGACACCAAAAAAAATAACCAATTTGGGAAAATTGGCTCA
TCAAATTGCCCCAATTTCGATCAAACCACTACGCTACCAACACGTAGAAA
TGAATAAATATGTCCAAGAATTGTCCCCCTACTAATTATAGCTTATGAAA
CGTAAAGTCATTTCCAACCGAAATTCCGTTgttgtttaaaaaaacttaga
CGTAGAGCTCTTGAAAACTGcgggaaaaacctttttttctgaAACTCTTT
TTAAACCCACCATCAAGGTTTGACGTCTCAAATTTTTAGAAGAATTATGC
AAAAAGAAATTGctgatttgacaaaaaatgaggcgccgcaaaatttaagt
ttaaattGTTATCTTCCGTTAAATCATTACATTTCATATAATGTTCTATC
ataattttaaggcttcatggAAACTTTTTAACGCCTGGCAATTTCATATG
AAAGGTTGCACACCGAAAACTCAATGCAACAGTGATAAACTATGTGGTTC
AGCTGAAAGAGATTGTTTGGTAAGATATTCACATTCTTGGTTGTAAGAGT
TGAATAGAGTGACCTCTGAAGAGAAGATAATCTTGTTTTGTTTCACAGAC
TTGAACAATCTCATTCGTGGTCATAATTAGCTGATTTTCAAGAGCCATCT
AACTCCAGTCTGTTTCAAACTGTCTAAtcacagtgccgtagcaactgggg
gagcaagggggggctatgccccccccccaataattttttcaaaaatggtt
attttgaaaagtgcaaagtttttcctttctaatttgtcataattgtcttt
atgtgcatgttttgagtgtatttttaagcaatctagagctcaaattttca
aaatttcccccctctggccaaaccatggttggccctcgcggtgtcactaa
acttcagcccccccaatatgaaaatgcttcctacggcactgaatcAACAT
ATACCCCCGGTATAACCACAAGtctataaagcccgaagagATAGATAAag
tatttttgctgaaaaatgagCCTCAGTGGGAATGACAACTTTATCAAAAT
ACCGATGGGGATCAATTGTTTCAAGAGTGGATACACTGTTATGTCTATTT
TCTATTTAATTTCCGATGGGAATAAAGCAATAGAACACTTCCCAGTAGGG
TTAATTTAATCCACCAGGAAAGATTATTTGGTCATTTTTTTCAGTGGGGT
ATGTGACACGGGGATGTAGACAACGTAATTTTTAGTTGCGAAGACTGCTG
CGAAAGATGATCCAGTCAGTATTTAATAGAGATCTGTGCatataacaatt
ttatttttttctttctagtaCAAATGCTGTGAAACAGACAGCTGCAATGG
CTCGATGTGACgataaaataatttatttttgatttatttttgatttatga
tttatttatgatttatttttgatttatttttgatttatctctacagtatg
tggcccccaaaacgtcgatcaaatttgaaatttctctcaaatctagaagg
aaaagaggttttacaatttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00051492-exon-scaffold_202-1491911889:312444..312509 | TCONS_00051492-exon-scaffold_202-1491911889:312444..312509 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1510915933:312444..312509 | TCONS_00051492-exon-scaffold_202-1510915933:312444..312509 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1575043694:312444..312509 | TCONS_00051492-exon-scaffold_202-1575043694:312444..312509 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1491911889:313126..313229 | TCONS_00051492-exon-scaffold_202-1491911889:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1510915933:313126..313229 | TCONS_00051492-exon-scaffold_202-1510915933:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1575043694:313126..313229 | TCONS_00051492-exon-scaffold_202-1575043694:313126..313229 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1491911889:313755..313862 | TCONS_00051492-exon-scaffold_202-1491911889:313755..313862 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1510915933:313755..313862 | TCONS_00051492-exon-scaffold_202-1510915933:313755..313862 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1575043694:313755..313862 | TCONS_00051492-exon-scaffold_202-1575043694:313755..313862 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1491911889:314662..314867 | TCONS_00051492-exon-scaffold_202-1491911889:314662..314867 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1510915933:314662..314867 | TCONS_00051492-exon-scaffold_202-1510915933:314662..314867 | Clytia hemisphaerica | exon |
| TCONS_00051492-exon-scaffold_202-1575043694:314662..314867 | TCONS_00051492-exon-scaffold_202-1575043694:314662..314867 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_202 | supercontig | scaffold_202:312444..314867 + |
Blast
The following BLAST results are available for this feature:
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