TCONS_00051491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051491
Unique NameTCONS_00051491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051491 ID=TCONS_00051491|Name=TCONS_00051491|organism=Clytia hemisphaerica|type=transcript|length=1318bp
TTCTTTCTGAGTTTTAAAACTGTtgacaaagatgaaaaattttgtCCTGT
TTCTGGCATTTGTTTTCAtgacattttcaaataaaggcttcatggAAACT
TTTTAACGCCTGGCAATTTCATATGAAAGGTTGCACACCGAAAACTCAAT
GCAACAGTGATAAACTATGTGGTTCAGCTGAAAGAGATTGTTTGtACAAA
TGCTGTGAAACAGACAGCTGCAATGGCTCGATGATGATCATTTATTCAAA
ATGGTTGATGTCTTTCACATTTCTAATTGTTTTCATTGTCATTATTTGGT
AATGAATTTATTGTAGGACACACATTTATTGTAGGATACAAAATCCACCC
CATAAAATCACTCATCTCACTAGATTCTGATTTCACACACCCTTCTCAAA
GCCCGATGCAAACCCTTCCCACTAGAAAAGTTaaccaaaatatcgtcctc
gccgaaaaattttccttaaatttttgtccccactggaaataatcaaataa
accaatcctcactgcaaaatacttACTATTTTTCTCATCCCCactcaatt
ttctgacttgaaaacaaaagaattgaaatccatggtcataaaaaatatga
gaacatcaatccccatcgagtttcagtcatttatttttatccccacaaat
cctaccgggtctgtgagaaggggttgtgATTTCCAGATAAGGTCGTATAG
TATTTCCGAATAGAATTTTTGCAGCAAAAAGATCAACCGTTCTAATCTCT
TTTCTTATGCAATCCTAGCTGAATTTAAGAAAGTTCCTGAAGTTCCCGTA
TTCCCACTTGTgagttttaaaaacaatctTGCATCCAAGCgatatttcag
atttttaaatccTGCCTGGTTTTCAGAAACACGGATAAGAGATGTATTTG
TGTTCATGTGAATTTGGTTTTCGTcgggattttttttttatattgatcaT
ATTTTCATCGATATTTTAGACATATTGCATTGTTGTGAAAATAGTGTTTT
TAGGGAAGTTATATATGGCATGGTTTTGTCCAGCTTAGAAGCAGCTTCGT
TAAAACGTGTTTGTTCAATGTTAGAAGTTTGGATGCATATTCTGGTTGTT
GTGTGGTCCTGGTTGCCTTTTGGGTGCGACACATATTaacaaatattttg
taaaaatacaatatttatTTCACCCGCCTACAGTGCAATCggttaatatt
ttttttgtcgAGAGTCTATATATTANCTGCCTTTTGGGTGCGACACATAT
CaacaaatattttgtaaaaatacaaTATTCATTTCACCCGCCTACAGTGC
AATcggttaatatttttt
Run BLAST on NCBI

transcript from alignment at scaffold_202:312424..321297+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051491 ID=TCONS_00051491|Name=TCONS_00051491|organism=Clytia hemisphaerica|type=transcript|length=8874bp|location=Sequence derived from alignment at scaffold_202:312424..321297+ (Clytia hemisphaerica)
TTCTTTCTGAGTTTTAAAACTGTtgacaaagatgaaaaattttgtCCTGT
TTCTGGCATTTGTTTTCAtgacattttcaaataaaggtaagattaatttt
aaatgaatatctaaaataatttGATCAAACCATCACTGGTTAGATATCTA
TATTGTCTCCCCAATGTTGCTGCATTAGACATCATTCGACCCAATCTCGT
ACCCAAAGCCATTTGTAGTTTTTGTCCGACCCAACTTCCATGTAGTGCAA
TGATCGTTAAGTGTATTTTCCCCCAATCTCAAAGCCATGTGTTATTTGTT
ATGATTGTGCAATTTACCGTACTTACCGTACAACGACCCAATATTTCCCT
TAACAATCAAGAGCGCCAAAATCGCCAAAAAGTGACTATCACAGCACTAT
ccgaatttttgcgattttggcgcTTTTCGATTGTTCAGTGAACTATTGGT
TTGTTATACAATAGGTAAGTACATTTTAAACAGTATGAACTGAACAAAAC
ATGGAATCAAAAGGGTTTAATGTTTTGGTAGTGCTTTAAACCCACCACAA
ACAAATTACCGTGTTACTTCAAGTGAACATCTCCTTCCTTTAAACGCCTC
GTAAAACGCCTCGTAAAACGCCCCTCCTTTAGGGAAAATCTTCAATGGGT
GCTTATGCGAAGGAATACGGTAATTCAAGGTTAATGAATTTCTCCTCCAT
AGTTGATGGTTTGCGTTGCCAACAATGTTTCAGTCAGAAATCAATGACCA
CCTGTTCAAGTCAACAATATGAAGCACCTTGTGATGTCTCTGAAATGTGT
TTTCAGGTTAAATTCTTACTTAACTTTTTGTAGTCAGCAGATATCATCAG
tcataaagaggaaaaatatctaaaaatatttctacTCGCTTTGCTCACAT
AATagttccaaaaatattttcctttaaagGGGACACCAAAAAAAATAACC
AATTTGGGAAAATTGGCTCATCAAATTGCCCCAATTTCGATCAAACCACT
ACGCTACCAACACGTAGAAATGAATAAATATGTCCAAGAATTGTCCCCCT
ACTAATTATAGCTTATGAAACGTAAAGTCATTTCCAACCGAAATTCCGTT
gttgtttaaaaaaacttagaCGTAGAGCTCTTGAAAACTGcgggaaaaac
ctttttttctgaAACTCTTTTTAAACCCACCATCAAGGTTTGACGTCTCA
AATTTTTAGAAGAATTATGCAAAAAGAAATTGctgatttgacaaaaaatg
aggcgccgcaaaatttaagtttaaattGTTATCTTCCGTTAAATCATTAC
ATTTCATATAATGTTCTATCataattttaaggcttcatggAAACTTTTTA
ACGCCTGGCAATTTCATATGAAAGGTTGCACACCGAAAACTCAATGCAAC
AGTGATAAACTATGTGGTTCAGCTGAAAGAGATTGTTTGGTAAGATATTC
ACATTCTTGGTTGTAAGAGTTGAATAGAGTGACCTCTGAAGAGAAGATAA
TCTTGTTTTGTTTCACAGACTTGAACAATCTCATTCGTGGTCATAATTAG
CTGATTTTCAAGAGCCATCTAACTCCAGTCTGTTTCAAACTGTCTAAtca
cagtgccgtagcaactgggggagcaagggggggctatgccccccccccaa
taattttttcaaaaatggttattttgaaaagtgcaaagtttttcctttct
aatttgtcataattgtctttatgtgcatgttttgagtgtatttttaagca
atctagagctcaaattttcaaaatttcccccctctggccaaaccatggtt
ggccctcgcggtgtcactaaacttcagcccccccaatatgaaaatgcttc
ctacggcactgaatcAACATATACCCCCGGTATAACCACAAGtctataaa
gcccgaagagATAGATAAagtatttttgctgaaaaatgagCCTCAGTGGG
AATGACAACTTTATCAAAATACCGATGGGGATCAATTGTTTCAAGAGTGG
ATACACTGTTATGTCTATTTTCTATTTAATTTCCGATGGGAATAAAGCAA
TAGAACACTTCCCAGTAGGGTTAATTTAATCCACCAGGAAAGATTATTTG
GTCATTTTTTTCAGTGGGGTATGTGACACGGGGATGTAGACAACGTAATT
TTTAGTTGCGAAGACTGCTGCGAAAGATGATCCAGTCAGTATTTAATAGA
GATCTGTGCatataacaattttatttttttctttctagtaCAAATGCTGT
GAAACAGACAGCTGCAATGGCTCGATGTGACgataaaataatttattttt
gatttatttttgatttatgatttatttatgatttatttttgatttatttt
tgatttatctctacagtatgtggcccccaaaacgtcgatcaaatttgaaa
tttctctcaaatctagaaggaaaagaggttttacaattttttttNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCTtttaatggcccccaaaacggaggtttg
caattttagcgatttctcgagatatctttaagatatgaatacaaaatttt
gaccatagttttgaaatgcgatttagagggttttgggcataaattttttt
ggtaaaatttttacagtatacccctggttgtcaaaacggaggtttggggc
ccccaaaacgtaggtgtagttaaaatcaaattattaagcccagtgNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgtttttcaaaatcaaccaaacagtctctttttgttct
tataaagttataaattgatcttttttgcttccaatgatggtacatcaaag
aaaagccgctttgagtagatttataaaagatttcaacgaccatttagatc
attaccgagacgttttctctccatctatatctttattacctccatgctcA
AACTTTGAGTCAAAGAGACTCTACATACTCAAGTTTCCCACTTTAATGTT
TTTCATCCATTTCTGGGATATAAACATTGTTCGAACCAAAGGTCATTACC
GTCATCACATTCGTTAAATGCCGTTATTATAACATCAGAAGTATGATGTG
CTGAGCTCAGAAACCCTTATGAGGATTATGGTATGGAGAGTACAAGTACA
GCAACCAACACACCCCTATCATTAAAAGgataattttgcaaaaaaaaaca
tttcaaatttttcaaaattttgctgtcgtcagcagaaatcagcaaaatac
gaaatcttgcaaaaaagtgttgatgtcagcaaaatttcaaacattttttt
tcttcaaaatgatccttttaatgatgtgcaactttagttcaattttcgtg
tttttacCTTTAGCCAAACttgagttattcaaaaaacaagttttgctgac
gtcagcaatttttagtttttgcggtttttcgcgaaaatgaggGCGTGAAC
AATTAGGTATCCTTCGTAGTAAATCATTTGTTTGCTCATTTTCTGCTGGC
TAATGGTcttcaaaaattatcgtaattttcaggtttttgagacatgccat
aacttaccgaGTTGTCTAAACTATCTGCACCGTGCAGGTACCCTGAGTGT
CAAACTTGGTTTTCTTTGAGATACAAAGCATATAGATTTTTTCGCGCTGA
CCTTTCAGCAAAAATACACGGATGTTCCGATGTTCTTAACACCGACCAAA
ACACGCTCTAAAACGACTTTCTTCTGCGTTCATTAGGTTTATAGCGTAGA
TTTTTTGCGTCCAACCAATGGGAAGAAGGAAGAAGTCATAAGAGTCATTC
ACGATTACCCATGATTCTTTTGAACTTTGAAATGTCTTGCAACACCGAAA
TGCCAAaacattattttcaagcacCTAAAACACTGGGTATCAATCATATT
AAAAGAACTTATCATGACATTTTAGGACTTACATAAATAAGGGGCATGTC
ATGCCCATGAAGCTTGCTCGTTTTAAGATATGACTTATATacgaataaga
atttttatcaaaacgaAGGATCAAAGGAGAAACCACAAAACAAAATGCTT
GCTATCAAGAACAAAAATTTCGATGATGGTGTGATTTACATTTTATTTCG
ACTGAGTTTTACCATTATCAACAAGATGAGAAACTTTGTCCTGTTTCTGA
CTTTtgtttttatgacattttcaaataaaggtAAGATTTACTTTCTTAAA
TACTTTGATCGAATACATTACTCGTTAGATATTTATATTGTCTCTATCAT
ATTAAAACCCCAATGTTGCTACATAAGACACCATATAGCCAACTTTTGTG
CAATTTGTTATAATTGTGAAATTTATGAACTGAGCAAAACAGGTAAAGTT
TTGATAGTGATTTTTAAACTCAACACAAACAAATAACCTGGTACTTCGAT
TACTTCTTCCTTGAAGCGCCTCGTCGAATAATGNGTAACCTGTTACTTCG
ATTACTTCTTCCTTGAAGCTCCTCGTCGAATAATGCCCCTCCTTTAGAGA
AGATTTTCAACGGGTatttattcgaagtaatgcggtgactcaaaattaat
gaaatttcttctcCACAGTTGATGGTTTACGTTGCCAACAATGCTACAGT
CAGAAATCAATGACCACCTGCTCAAGTCAACAATATGAAGCACACTGCGA
TGTCTCTGAAATGTGTTTTCAGGTAAAACTCCTAACTGTTTCTTTATATT
TAATCTTTAGTAGTCTGTAGCGTGGTGGTAAGTTTTAGCCATTAAGAGGA
AATATATCCAAAAGTATCGTACTCACTTCGctcacataatttttttttca
aaactatttctcTTGATAGGGGGGCACCAAAATATTCGATGCCCAAATTT
TTGTCGACCTACCTAGTCTGAAGTGAaacgcagacctctatagatatatt
tcctataagaaactcttttcgctagaggatgaacAGAAGTCTACGACCTA
CCATGCTACGCTAAAAAAAACACGTTAATTGAAGAAGTATGTCCAAAAAT
GTCAACAGTTATAGCTCGAAAATAAAACTCATTTCCAGTCAAAATTCTGT
TTTAGAAAACTTAGACCAAAAGCTTTTGAAAACtgcaaaaaccttttttt
tgaaactcGTCATAGATCCGCCAACGAGGGTTAGATGTCTCAAATTTTTA
GTAGAATTATGTAAAagaaattgggcttttccagaaaaaaaccgtatacc
ccctgttgaggaggtccatttccgttccaagggggtaaggtttgatatgt
ggcagAATTTCATAGgaagatacaaaaatctgtcaaaaataactggaatt
ccatgggggtaacCTTTTAAATcttactaaaattcagaattccagagggg
tttaagcctgaaattagctggaattccaggggggttacagcatttcagcc
acaaaatgatggacctcctcaacacggggttacggtttttttctggaaaa
gcccatgcTAATCTGACAAAAAATGAGGTGCGAAAAAGGTTATCATCTTC
CGTTAAATTATTACATTTCATataatattttatcataatttttagGCTTC
ATGGAAACTTTTTAACGCCTGGCAATTTCATATGAAAGGTTGTACACCGA
AGACTCAATGCAACAGTGACAAACTTTGTGGTTCAGCTGAGAGAGATTGT
TTGGTAAGATATTTAACGCCCCTGAATAACAGCCCCTGTGGAAATTCTTT
CTTCAACTGGGATAAATtcttattgaaatcccaatgggaatagaaattct
attgatccaaggttaaaaatccagtgggatggttttgagttcaatttcta
aacatggaatttcgaatggggatgaaatcaaagtcaatttcccagtgggg
ctgaaataaTTACAGGGCTTTTTcacaccggggacgaaatttttgtcaaa
cttTCCAGTGACGGTGGggtctcagtgggtctgtgacacaggggtgttat
ttaCATTCTTGATTGAAAGAGTTGAATTGAGTAACTGGATGCACATTCTG
AAGAGAAAATAATCTTGTTTGGTTTTCTCAGACCTAGACAATCTCATTCG
TGGTCATAATTAGCTGATTTTCAAGAGCAGTCCAGCTCCACTCTGTGCTT
TGATTGAAATGTCTAATTAACATATAGGCCCCGGGTATAACCACAAGATA
GAGTACTATAGGACATTCTATTTAGGCCACGTAAAACTACAATAGAATTT
CACCGCTTGACTAATTAGTTGACTTTgtggattttcgaaaacaatagcaa
caataccTTTTGTGATATTCCCTTTTTTGCTCGGAGAAGCTTAAAACATT
CCCTCTAGCCTTAGCCcccgggctttacagaaatctattAGTATAACATT
AAATGAACGCTGAAACAGACACCCCTTTCTCAATGCCCCGATGGAACTTT
TTTGTTGGGAtattaactttttcaaaatccCGATGGAGATCAATAGTTTC
AAGAGTGGATgcaatattttttctctttaatttcCGATGGGATAATATTG
ATATGTCACTTTCCCACTGTGGTTAATTTCTTCcgattttttggtcaatt
tttagtGGGCTGAGGGCTCCAGCGGGTGTGTGACACGGGGGTGTAAATAA
CTTAGTTTTCAATTGCGAAGACTGCTAAAAGATGACCCAGTTAGTATTTT
ATAGGCATTCTGCCCATCtaacaattttcaatttcattttttctttctag
tACAAATGCTGTGAAACAGACAGCTGCAATGGCTCGATGATGATCATTTA
TTCAAAATGGTTGATGTCTTTCACATTTCTAATTGTTTTCATTGTCATTA
TTTGGTAATGAATTTATTGTAGGACACACATTTATTGTAGGATACAAAAT
CCACCCCATAAAATCACTCATCTCACTAGATTCTGATTTCACACACCCTT
CTCAAAGCCCGATGCAAACCCTTCCCACTAGAAAAGTTaaccaaaatatc
gtcctcgccgaaaaattttccttaaatttttgtccccactggaaataatc
aaataaaccaatcctcactgcaaaatacttACTATTTTTCTCATCCCCac
tcaattttctgacttgaaaacaaaagaattgaaatccatggtcataaaaa
atatgagaacatcaatccccatcgagtttcagtcatttatttttatcccc
acaaatcctaccgggtctgtgagaaggggttgtgATTTCCAGATAAGGTC
GTATAGTATTTCCGAATAGAATTTTTGCAGCAAAAAGATCAACCGTTCTA
ATCTCTTTTCTTATGCAATCCTAGCTGAATTTAAGAAAGTTCCTGAAGTT
CCCGTATTCCCACTTGTgagttttaaaaacaatctTGCATCCAAGCgata
tttcagatttttaaatccTGCCTGGTTTTCAGAAACACGGATAAGAGATG
TATTTGTGTTCATGTGAATTTGGTTTTCGTcgggattttttttttatatt
gatcaTATTTTCATCGATATTTTAGACATATTGCATTGTTGTGAAAATAG
TGTTTTTAGGGAAGTTATATATGGCATGGTTTTGTCCAGCTTAGAAGCAG
CTTCGTTAAAACGTGTTTGTTCAATGTTAGAAGTTTGGATGCATATTCTG
GTTGTTGTGTGGTCCTGGTTGCCTTTTGGGTGCGACACATATTaacaaat
attttgtaaaaatacaatatttatTTCACCCGCCTACAGTGCAATCggtt
aatattttttttgtcgAGAGTCTATATATTANCTGCCTTTTGGGTGCGAC
ACATATCaacaaatattttgtaaaaatacaaTATTCATTTCACCCGCCTA
CAGTGCAATcggttaatatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032640XLOC_032640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051491-exon-scaffold_202-1491911889:312424..312509TCONS_00051491-exon-scaffold_202-1491911889:312424..312509Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1510915933:312424..312509TCONS_00051491-exon-scaffold_202-1510915933:312424..312509Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1575043694:312424..312509TCONS_00051491-exon-scaffold_202-1575043694:312424..312509Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1491911889:313755..313862TCONS_00051491-exon-scaffold_202-1491911889:313755..313862Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1510915933:313755..313862TCONS_00051491-exon-scaffold_202-1510915933:313755..313862Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1575043694:313755..313862TCONS_00051491-exon-scaffold_202-1575043694:313755..313862Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1491911889:320174..321297TCONS_00051491-exon-scaffold_202-1491911889:320174..321297Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1510915933:320174..321297TCONS_00051491-exon-scaffold_202-1510915933:320174..321297Clytia hemisphaericaexon
TCONS_00051491-exon-scaffold_202-1575043694:320174..321297TCONS_00051491-exon-scaffold_202-1575043694:320174..321297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_202supercontigscaffold_202:312424..321297 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0278634	0.13615	0	0.0638843	0.428491	0.393994	0.257286	0.0541942	0.541091	0.642305	0.245744	0.14853	0.483419	0.600522	0.104622	0.241959	0	0	0	0	0.0359016	0.0751469
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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